Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107166820 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | zinc finger CCCH domain-containing protein 11A-like, transcript variant X1 |
| Transcript id | XM_015515631.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107166820 |
| Genbank | XM_015515631.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107166820 | gene7541 | Diuraphis noxia | gene | JOTR01000375 61274..64423 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015371117.1 | cds10741 | Diuraphis noxia | CDS | JOTR01000375 63453..63515 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna11109 ID=rna11109|Name=XM_015515631.1|organism=Diuraphis noxia|type=mRNA|length=1124bp|location=Sequence derived from alignment at JOTR01000375:61275..64423- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
CTTGGGTTGATTGATATTGGTCTACCGATTTTTTCACTTAAAACTTCTTC
AGCAATTGCGATAACATCGATAAACGACAACAACACCTACAGAATTCTCG
TATTGTTTGCCGTCAGCTCTTTCGCCCGGCGGTGTTCATGTCGAGTCTGA
CCGGCCGCSGACATTAACGTCGCCTCCGCCGCTGTGACAAGTCGAACGCG
TCCCAACAGTGCTCAAATCCCGGGGAACAGCAACCACCGGACCACAGCGG
CGGCATTGGACAGGGGACACCTCAGGRGAGAGACGGGACCGATCGTACGG
ACAACGAAATCCACGAAACACGCCACTCAGGACCACCAAAAACTATGGAA
AAGGGCGACAAGAAAAATAACGACTGTTACTTTTATTACTATTCCACTTG
CATGAAGGGAGACAAATGTCCATTTCGCCATGAACCTCAAGCATTAGGAT
GTGAAATGGTGTGTAGTTTTTGGCAAAGCGGAAAGTGTGAAAATGATCAT
TGTACATTACGCCATATGGAATTAAAGAAAAACCGTAAAGCAATACCATG
TTATTGGGAAAAACAACCCACTGGATGTCGCAAGCCATATTGTGCATTTC
TGCATACCAAAACTCGTGATCCATCTCAAGATGCAGGGGCTATTGCAATG
GCAGCTAATACCATGGCTATTGAAAATAGCTTTCGCATAAATCCAATGGC
TGGTGTTGCACTTACTGCTGGTCCTGAAGCTGCATTGCGACAACGTTATG
ACCAGCCATTACGAATGAATTGACAACCAATGAACGCGAGTACGGCATCT
ACTGTTTATGGCAGTTCTGTCGTCACACTGCCATATGTATTCAATAATAA
TCAATCCACTGCTGCCATGTTTCTTGATCATTGCAACTTTAATGCGTTTA
TGTAAAATTCAATATTGGTATTGAAAACCTATTTTCAGTACCTATTGAAG
AATAAAAAAAAAACTGTTTTCCTAGAAAATTTTCATATTCTTGGTTAGGC
AGAACTGTTTCATTAAACAAATGCAATATTCAACAACTTAAGGCCGAAGC
TTATTTATTTATTTATTTATTTAATTATCTTTGTTTTTCTATTTGAATAT
TTTATTTTTATTTTTAACTATTGT back to topprotein sequence of XM_015515631.1 >rna11109 ID=rna11109|Name=XM_015515631.1|organism=Diuraphis noxia|type=polypeptide|length=143bp
MEKGDKKNNDCYFYYYSTCMKGDKCPFRHEPQALGCEMVCSFWQSGKCEN
DHCTLRHMELKKNRKAIPCYWEKQPTGCRKPYCAFLHTKTRDPSQDAGAI
AMAANTMAIENSFRINPMAGVALTAGPEAALRQRYDQPLRMN. back to topmRNA from alignment at JOTR01000375:61275..64423- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna11109 ID=rna11109|Name=XM_015515631.1|organism=Diuraphis noxia|type=mRNA|length=3149bp|location=Sequence derived from alignment at JOTR01000375:61275..64423- (Diuraphis noxia)
CTTGGGTTGATTGATATTGGTCTACCGATTTTTTCACTTAAAACTTCTTC
AGCAATTGCGATAACATCGATAAACGACAACAACACCTACAGAATTCTCG
TATTGTTTGCCGTCAGCTCTTTCGCCCGGCGGTGTTCATGTCGAGTCTGA
CCGGCCGCSGACATTAACGTCGCCTCCGCCGCTGTGACAAGTCGAACGCG
TCCCAACAGTGCTCAAATCCCGGGGAACAGCAACCACCGGACCACAGCGG
CGGCATTGGACAGGGGACACCTCAGGRGAGAGACGGGTAAGWCGGGAACC
GTGTTAAAAATAACCTTAAACGCACGTCGCCCACCTCGGCAAACGCGGTC
GCGTAACCCACGGGGGSGSYGCGCACGTTGTGCACATCTCTCCGTTCCCG
TCGGCGACCGTTTCTCACGTTATCACCTCACCGGGACACAGCACTGAGCA
CACTGCCTGGCTGGTATCATCAGCTCTTGCCTAGCCTGGCTGGCGGCTGC
CTCCGCGAATGTGCCCCCGTCGGCAGAGGTGTTATTACTTATTACTACTT
TACTATAGTCGGTATTCAGTTTTTAGGCACGTCAGTGGTGTGCAATTTTT
TTTAATGGTGTCTCACCGCGACCGGTGTGCGGTACGCGGACGTCTCGGCG
GAATATTATTTTCTCGTGCCATCGTGTCTTGTCTTACGCACTTGCAAGTT
CCGCTGCCGCCCACTTTTAGCTAAAAAAAGTACAATAACGATAATAATAT
TACGTTCTATAACCCAACTTCCCCGTTGATTCACCCCTCCGCTTGTGCAG
TTAGGTTTTTTTTATGGTTTTGTTTTGATACAATTTTTTCGTTTCCACAG
GACCGATCGTACGGACAACGAAATCCACGAAACACGCCACTCAGGACCAC
CAAAAACTATGGAAAAGGGCGACAAGAAAAATAACGACTGTTACTTTTAT
TACTATTCCACTTGCATGAAGGTTGGTTTGTGTATTGCTTAAGTCATTGG
GAAATGTCATAAACTATAAACTAGTCTAAAAGAATGTTCCCATCATTATT
AAATGCTTACCGTTTACCTAGGCACCAAGTGATTTCAAATAATTCTATTT
YTATAGGCGGAGGCATATTTTATTTTGTACCTATTAGTTTCAATAACAAT
ATTTAGTTAAATGCTAGACATTTTACTTTTAATTTCTATACCCATGTGTA
CTTTTATCTTTTTGCCATAGCTCGTGTTTAGACACAAATTTCACTTAACG
AATKAGAACTTTATTAACTTAAAGAGTGAAATCATATATGTATTTAAATT
GTGTAATATTCTAAAAATATTACCAAACTTTTGTTTAGAAAATAAAATCT
ATACTGTGTACRAAACTAAAGTTTTTCGACTTTTTGTGTTATATTATTGT
TATAATCGAATTACTAGTAAATCTTATAAATATATATAAATATTGTGTGT
AATTTTATAGGGAGACAAATGTCCATTTCGCCATGAACCTCAAGCATTAG
GATGTGAAATGGTGTGTAGTTTTTGGCAAAGCGGAAAGTGTGAAAATGAT
CATTGTACATTACGCCATATGGAATTAAAGGTAACTTATTAGATTCAAAT
AATAGACTTAAATGTTTTCTTGAATATTTTCAATCTTGCTTACTCTAAGC
ACTAAGTTTTAAGAAAAGAGTACTTTTTTGGCGTTCATTTCCTACAATCA
TCTTTTCCGCTATACTATGTTGTAATATATTTATGTATCCTTCATTTTTT
AATCAGAAAAACCGTAAAGCAATACCATGTTATTGGGAAAAACAACCCAC
TGGATGTCGCAAGCCATATTGTGCATTTCTGCATACCAAAACTCGTGATC
CATCTCAAGATGCAGGTATGCTCCTGGAATATTAACTTTGGATGTTGTTA
TTTATTTATAAAAAAAATTTAATTCTATCAAGTTGAATACATGCCAGGGA
CTGAACATGTTAAGAGAATGTTACACTGGCATTTGTTGTCTCTGTCTTAC
TAGTTTTTAATATTTAAAATTTACGTGTAGTTTCGTTAGTTTAAAATTAG
AGTTGATTGACCTCTTATGAAACTTGAGGGGCAGAACAGTATGTGTTTGT
ATGTATGTGGTGGTTTTTTTTTTATGATAATTCAGTTTCCAAGTGAATTA
TGAGCATTTTAAATTTATGCCATATATTACATACGCTTAACTTGCTAAAA
AATCAAACTAACTTAAAAAAAATCCCTCATTATGTTCTTACCATCGCGTT
TTACTATATATTGATTCAATTTTCAAACTAACAAAGCTACTCGGTGATCT
GCTGATTTGATATATTACACACTTGTAAGACGGAGAACAACAATTGCCAG
CATAACATCCTTTTAATAATAATGCAGTCGTTTAATATTTCAATATGTAG
TATTTTATTCTGTTATTCAGTTACCATTTATCATGAAATATTAATAGGTA
CACAATTTGATAATACCTAAGTATGAAATAATTTATCAAAATATTTACTT
TGAAGAACTTCTCATTCTATTAATTAAGTCTTAATTAAATCATCTATATT
ATAAAATATATATTTAATATTTTCCAATAAGATAATAGGATTAATATTAT
ATTTTTAACATTGACATAATTATTTAAAAAATTTAATTTTTATTTATTTG
ATGTTGATTAGGGGCTATTGCAATGGCAGCTAATACCATGGCTATTGAAA
ATAGCTTTCGCATAAATCCAATGGCTGGTGTTGCACTTACTGCTGGTCCT
GAAGCTGCATTGCGACAACGTTATGACCAGCCATTACGAATGAATTGACA
ACCAATGAACGCGAGTACGGCATCTACTGTTTATGGCAGTTCTGTCGTCA
CACTGCCATATGTATTCAATAATAATCAATCCACTGCTGCCATGTTTCTT
GATCATTGCAACTTTAATGCGTTTATGTAAAATTCAATATTGGTATTGAA
AACCTATTTTCAGTACCTATTGAAGAATAAAAAAAAAACTGTTTTCCTAG
AAAATTTTCATATTCTTGGTTAGGCAGAACTGTTTCATTAAACAAATGCA
ATATTCAACAACTTAAGGCCGAAGCTTATTTATTTATTTATTTATTTAAT
TATCTTTGTTTTTCTATTTGAATATTTTATTTTTATTTTTAACTATTGT back to topCoding sequence (CDS) from alignment at JOTR01000375:61275..64423- >rna11109 ID=rna11109|Name=XM_015515631.1|organism=Diuraphis noxia|type=CDS|length=429bp|location=Sequence derived from alignment at JOTR01000375:61275..64423- (Diuraphis noxia)
ATGGAAAAGGGCGACAAGAAAAATAACGACTGTTACTTTTATTACTATTC
CACTTGCATGAAGGGAGACAAATGTCCATTTCGCCATGAACCTCAAGCAT
TAGGATGTGAAATGGTGTGTAGTTTTTGGCAAAGCGGAAAGTGTGAAAAT
GATCATTGTACATTACGCCATATGGAATTAAAGAAAAACCGTAAAGCAAT
ACCATGTTATTGGGAAAAACAACCCACTGGATGTCGCAAGCCATATTGTG
CATTTCTGCATACCAAAACTCGTGATCCATCTCAAGATGCAGGGGCTATT
GCAATGGCAGCTAATACCATGGCTATTGAAAATAGCTTTCGCATAAATCC
AATGGCTGGTGTTGCACTTACTGCTGGTCCTGAAGCTGCATTGCGACAAC
GTTATGACCAGCCATTACGAATGAATTGA back to top
|