Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107166911 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | protein HGV2-like |
| Transcript id | XM_015515758.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107166911 |
| Genbank | XM_015515758.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107166911 | gene775 | Diuraphis noxia | gene | JOTR01000014 629213..630770 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id9909 | id9909 | Diuraphis noxia | exon | JOTR01000014 629213..630177 + |
| id9910 | id9910 | Diuraphis noxia | exon | JOTR01000014 630237..630770 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015371244.1 | cds1113 | Diuraphis noxia | CDS | JOTR01000014 629219..630177 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna1141 ID=rna1141|Name=XM_015515758.1|organism=Diuraphis noxia|type=mRNA|length=1499bp|location=Sequence derived from alignment at JOTR01000014:629213..630770+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ATCAAAATGCCTTCTGAAGTGGTACAAAAAGAAGCTGAGGTTGGTGTCGA
AGAGAAAactattattggaaaaatagagACAAAAGAAAATGGTTCTCAAA
AATCCAAAACAGAAGAAATTCAAACAGTTGAAAATCCAGAAGAATCTAAA
ATCACTGAAGAAGAATTATCTGAAAGTGAAAACAAAGAAAACGAGGAACC
TACTGTTGAAGATATTGAGTTGCAAAAAAAACGTGCCGATCAACTTTTAA
CTGATGGTAAAcgtcatttaattattaaagactTTCAAGTAGCTGTTGAT
GTTTTAAGTGAAGCGTGCAGTCTTTTTGGAACTATCTATAGTGAATTGGA
TGAAAAATGTGCAGAGGCCTATTTCAACTATGGTTGTGCCCTTCTTGAGC
TTAGTAAAAATCAAACAAGTCCTGTCGGACTAGAAGAAAAAGACGAAGAA
GAAAATGACGGAGAGACTTCCTCTGAAGAAATAGATTCAAGTAATATGAC
AAATGATGATAGTAAAAAATACTCTATATCTAWTGTCACTGACGAAGTTG
AAGAAAAAGAAACAGGCAATGTTGATGACACTGAAAAAGAAGAAGAATCA
ACYgaaaacaaaaaaaatctaccaGATAAAACATCAGTTGTTAAAAAAGA
TRATGAAGTTGAAGGACAATCCACTGAAAAAGATTTGTCTGTTGATGATC
TTGAAGGACAATCCTCTGAAAAAGAAGAGATGGCTGTTGATGGTGCTGAA
AAGCCAGATGAAGATGTTGGTGAAGATGATGTAAATGATTTACAAATAGC
TTGGGAAATGCTTGACTTGGCCAAagtgatttataaaaacaaagatACTG
AAGAATCAAAACTCAAACTTGCTGAAGTATTAATGAAATGTGGAGAAGTA
AGCATTGAAgatgaaaaatttgaaacagCTATTCAAGATATGACAGAATC
CTTGGAAATCCGAAGgttATTATTACCAGAGGACAGTCGTATCATTGCTG
AAACTTTATTTCAATTAGGCATAGCGCAGGAGTTAGGAGGAAGCGGTGAG
CAAGCAATTGAGTTGCTAACAGAAGCAGCTGCTGTTttgaatcaaaaaat
taaatctttggAGAGTATGAATGATGACAGTGAAATAATCCAAGCAGAAA
TTGYTGAAGTTAAATCTATTATTCCTGAGATACAAGAAAAGATTTTAGAT
ATCAAAGAACGTAAAAAGGCTGCTGTAAGTGCTTTGTTGGCAGCTGTAGG
TGCTTCTTGTAACGTACCTACAACAAATGGTGAAGCATCATCAACAATCA
AACAGGCATCCAACATTAGCCATTTGGTACGTAAAAGACCTAAACAGGAG
GAAACTGCAGATGCAGCTCCGAACAAGGTTCCTAAACTTGATGAATCCTC
AAATGCCAAACAATAATTTGgaacctatacatttatttaatttattttta
ttttcctccAGTTTTAATCattggtttaatttttattttttaacattca back to topprotein sequence of XM_015515758.1 >rna1141 ID=rna1141|Name=XM_015515758.1|organism=Diuraphis noxia|type=polypeptide|length=470bp
MPSEVVQKEAEVGVEEKTIIGKIETKENGSQKSKTEEIQTVENPEESKIT
EEELSESENKENEEPTVEDIELQKKRADQLLTDGKRHLIIKDFQVAVDVL
SEACSLFGTIYSELDEKCAEAYFNYGCALLELSKNQTSPVGLEEKDEEEN
DGETSSEEIDSSNMTNDDSKKYSISXVTDEVEEKETGNVDDTEKEEESTE
NKKNLPDKTSVVKKDXEVEGQSTEKDLSVDDLEGQSSEKEEMAVDGAEKP
DEDVGEDDVNDLQIAWEMLDLAKVIYKNKDTEESKLKLAEVLMKCGEVSI
EDEKFETAIQDMTESLEIRRLLLPEDSRIIAETLFQLGIAQELGGSGEQA
IELLTEAAAVLNQKIKSLESMNDDSEIIQAEIXEVKSIIPEIQEKILDIK
ERKKAAVSALLAAVGASCNVPTTNGEASSTIKQASNISHLVRKRPKQEET
ADAAPNKVPKLDESSNAKQ. back to topmRNA from alignment at JOTR01000014:629213..630770+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1141 ID=rna1141|Name=XM_015515758.1|organism=Diuraphis noxia|type=mRNA|length=1558bp|location=Sequence derived from alignment at JOTR01000014:629213..630770+ (Diuraphis noxia)
ATCAAAATGCCTTCTGAAGTGGTACAAAAAGAAGCTGAGGTTGGTGTCGA
AGAGAAAactattattggaaaaatagagACAAAAGAAAATGGTTCTCAAA
AATCCAAAACAGAAGAAATTCAAACAGTTGAAAATCCAGAAGAATCTAAA
ATCACTGAAGAAGAATTATCTGAAAGTGAAAACAAAGAAAACGAGGAACC
TACTGTTGAAGATATTGAGTTGCAAAAAAAACGTGCCGATCAACTTTTAA
CTGATGGTAAAcgtcatttaattattaaagactTTCAAGTAGCTGTTGAT
GTTTTAAGTGAAGCGTGCAGTCTTTTTGGAACTATCTATAGTGAATTGGA
TGAAAAATGTGCAGAGGCCTATTTCAACTATGGTTGTGCCCTTCTTGAGC
TTAGTAAAAATCAAACAAGTCCTGTCGGACTAGAAGAAAAAGACGAAGAA
GAAAATGACGGAGAGACTTCCTCTGAAGAAATAGATTCAAGTAATATGAC
AAATGATGATAGTAAAAAATACTCTATATCTAWTGTCACTGACGAAGTTG
AAGAAAAAGAAACAGGCAATGTTGATGACACTGAAAAAGAAGAAGAATCA
ACYgaaaacaaaaaaaatctaccaGATAAAACATCAGTTGTTAAAAAAGA
TRATGAAGTTGAAGGACAATCCACTGAAAAAGATTTGTCTGTTGATGATC
TTGAAGGACAATCCTCTGAAAAAGAAGAGATGGCTGTTGATGGTGCTGAA
AAGCCAGATGAAGATGTTGGTGAAGATGATGTAAATGATTTACAAATAGC
TTGGGAAATGCTTGACTTGGCCAAagtgatttataaaaacaaagatACTG
AAGAATCAAAACTCAAACTTGCTGAAGTATTAATGAAATGTGGAGAAGTA
AGCATTGAAgatgaaaaatttgaaacagCTATTCAAGATATGACAGAATC
CTTGGAAATCCGAAGgtaagttattgtttttaaaaattacaagaaaaata
aaataataagttatatttttgtaggttATTATTACCAGAGGACAGTCGTA
TCATTGCTGAAACTTTATTTCAATTAGGCATAGCGCAGGAGTTAGGAGGA
AGCGGTGAGCAAGCAATTGAGTTGCTAACAGAAGCAGCTGCTGTTttgaa
tcaaaaaattaaatctttggAGAGTATGAATGATGACAGTGAAATAATCC
AAGCAGAAATTGYTGAAGTTAAATCTATTATTCCTGAGATACAAGAAAAG
ATTTTAGATATCAAAGAACGTAAAAAGGCTGCTGTAAGTGCTTTGTTGGC
AGCTGTAGGTGCTTCTTGTAACGTACCTACAACAAATGGTGAAGCATCAT
CAACAATCAAACAGGCATCCAACATTAGCCATTTGGTACGTAAAAGACCT
AAACAGGAGGAAACTGCAGATGCAGCTCCGAACAAGGTTCCTAAACTTGA
TGAATCCTCAAATGCCAAACAATAATTTGgaacctatacatttatttaat
ttatttttattttcctccAGTTTTAATCattggtttaatttttatttttt
aacattca back to topCoding sequence (CDS) from alignment at JOTR01000014:629213..630770+ >rna1141 ID=rna1141|Name=XM_015515758.1|organism=Diuraphis noxia|type=CDS|length=1410bp|location=Sequence derived from alignment at JOTR01000014:629213..630770+ (Diuraphis noxia)
ATGCCTTCTGAAGTGGTACAAAAAGAAGCTGAGGTTGGTGTCGAAGAGAA
AactattattggaaaaatagagACAAAAGAAAATGGTTCTCAAAAATCCA
AAACAGAAGAAATTCAAACAGTTGAAAATCCAGAAGAATCTAAAATCACT
GAAGAAGAATTATCTGAAAGTGAAAACAAAGAAAACGAGGAACCTACTGT
TGAAGATATTGAGTTGCAAAAAAAACGTGCCGATCAACTTTTAACTGATG
GTAAAcgtcatttaattattaaagactTTCAAGTAGCTGTTGATGTTTTA
AGTGAAGCGTGCAGTCTTTTTGGAACTATCTATAGTGAATTGGATGAAAA
ATGTGCAGAGGCCTATTTCAACTATGGTTGTGCCCTTCTTGAGCTTAGTA
AAAATCAAACAAGTCCTGTCGGACTAGAAGAAAAAGACGAAGAAGAAAAT
GACGGAGAGACTTCCTCTGAAGAAATAGATTCAAGTAATATGACAAATGA
TGATAGTAAAAAATACTCTATATCTAWTGTCACTGACGAAGTTGAAGAAA
AAGAAACAGGCAATGTTGATGACACTGAAAAAGAAGAAGAATCAACYgaa
aacaaaaaaaatctaccaGATAAAACATCAGTTGTTAAAAAAGATRATGA
AGTTGAAGGACAATCCACTGAAAAAGATTTGTCTGTTGATGATCTTGAAG
GACAATCCTCTGAAAAAGAAGAGATGGCTGTTGATGGTGCTGAAAAGCCA
GATGAAGATGTTGGTGAAGATGATGTAAATGATTTACAAATAGCTTGGGA
AATGCTTGACTTGGCCAAagtgatttataaaaacaaagatACTGAAGAAT
CAAAACTCAAACTTGCTGAAGTATTAATGAAATGTGGAGAAGTAAGCATT
GAAgatgaaaaatttgaaacagCTATTCAAGATATGACAGAATCCTTGGA
AATCCGAAGgttATTATTACCAGAGGACAGTCGTATCATTGCTGAAACTT
TATTTCAATTAGGCATAGCGCAGGAGTTAGGAGGAAGCGGTGAGCAAGCA
ATTGAGTTGCTAACAGAAGCAGCTGCTGTTttgaatcaaaaaattaaatc
tttggAGAGTATGAATGATGACAGTGAAATAATCCAAGCAGAAATTGYTG
AAGTTAAATCTATTATTCCTGAGATACAAGAAAAGATTTTAGATATCAAA
GAACGTAAAAAGGCTGCTGTAAGTGCTTTGTTGGCAGCTGTAGGTGCTTC
TTGTAACGTACCTACAACAAATGGTGAAGCATCATCAACAATCAAACAGG
CATCCAACATTAGCCATTTGGTACGTAAAAGACCTAAACAGGAGGAAACT
GCAGATGCAGCTCCGAACAAGGTTCCTAAACTTGATGAATCCTCAAATGC
CAAACAATAA back to top
|