Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107167636 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | uncharacterized LOC107167636 |
| Transcript id | XM_015516786.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107167636 |
| Genbank | XM_015516786.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107167636 | gene810 | Diuraphis noxia | gene | JOTR01000015 267028..268746 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015372272.1 | cds1144 | Diuraphis noxia | CDS | JOTR01000015 267028..267498 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna1176 ID=rna1176|Name=XM_015516786.1|organism=Diuraphis noxia|type=mRNA|length=1404bp|location=Sequence derived from alignment at JOTR01000015:267028..268746+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
atgtctgaacaaaatattcataataacatacattCTGAGGCTAATGCTAA
TAATTTCTGGCTAACACAACCTCCACCTTCTTTTTCTCAGCCTCTGCCAC
CTTTTACGCAGCCTCTGCCACCTTTTACGCAGCCTCCGCCCATCCAACca
atgtataatttagattatcAAATGCCTTTTAACCACCCACATCTATCTCC
ATGCAATCAGCCAGCACAAAACTATTATATGCCTCATGGTggcaatatta
ataatcaatactaTCAAGACCAATATGTACCTCCTAATCAGAATATAAGC
AATTTATTTTCATCTCTTCCGGACAATATTGATGAAGAATACATCCTCCA
ATATATATGTCCTATACCAAAAGCTTTAAAAGACGAAACCAGTATTTGGA
TTGAAAAGTGGTTAGCCagcaaagaaaaaaatactacaattaagaatata
aaatcaacAGATATAGTAGAGatcaaCCAAATTAGCAATTATGTAAAAga
atgtaaacaattattagaaaacatgtgtaataaaaaaatatttatggaac
AAAATGTATCAACTATGTCTGAATCCGARTGGAAAAAGGCTTGCTCTgat
ttaatcttaaataaaAAATACATAGATACCATACTAAAAAAGTTAGAYTT
TGATACTGATACAATGTCTGAATTAAAATTTCGATTAgccaaaagaaaaa
agaaaaggaATAGATTAAAGAGGTTTAAAtctaatctaaaaattataaaa
gctcAACAAAAAGATGAAATAAGAGAAATAAACAGAAAGATTGATGCTTG
gcaaaatacattaaatgaaaatatattacaagaaAAAAGagttaataaaa
ctaaaattgaagCCAACATTGTCTTGAAAGGAGTTAGAGGAAAAATCGAA
GATGCTAAAAATCAGTTATCATTGTtagataatttagaaaaattaagaaa
atgtagACTTCAAAACTGTgttaacaaaagaaaaaatccACTTCTAGAAA
ATTccataaataaACTAAAAGTACTTTGGCATCAGAAATTAACAGACTAC
aataaagaagaagaagaattgaaaaatatgcttACCGAAGCTGAagcaaa
aaaacatgaaaaacgAGAAATTGAAATTCAAGAAAAGTTTGCAGAATGGG
ATCATATTCTTTTTGGGCAGAATTTTAGTTCTCATGAAATGGTGTTTGAT
AACTATACATTCCTTGAAatacggAGAGGCTGggataaatatattgttga
tgaaaataaaatatcagcATCTAGCAGTATTCCTTTAGGTTGGATTTTAC
CAGTAGTACCTTGTAATACTGATTGGGCTAAATATTCCAATAACGCtaat
atattgtgataaataattgcacgtataaatttaataaaaattgttgtttt
ttaa back to topprotein sequence of XM_015516786.1 >rna1176 ID=rna1176|Name=XM_015516786.1|organism=Diuraphis noxia|type=polypeptide|length=453bp
MSEQNIHNNIHSEANANNFWLTQPPPSFSQPLPPFTQPLPPFTQPPPIQP
MYNLDYQMPFNHPHLSPCNQPAQNYYMPHGGNINNQYYQDQYVPPNQNIS
NLFSSLPDNIDEEYILQYICPIPKALKDETSIWIEKWLASKEKNTTIKNI
KSTDIVEINQISNYVKECKQLLENMCNKKIFMEQNVSTMSESEWKKACSD
LILNKKYIDTILKKLDFDTDTMSELKFRLAKRKKKRNRLKRFKSNLKIIK
AQQKDEIREINRKIDAWQNTLNENILQEKRVNKTKIEANIVLKGVRGKIE
DAKNQLSLLDNLEKLRKCRLQNCVNKRKNPLLENSINKLKVLWHQKLTDY
NKEEEELKNMLTEAEAKKHEKREIEIQEKFAEWDHILFGQNFSSHEMVFD
NYTFLEIRRGWDKYIVDENKISASSSIPLGWILPVVPCNTDWAKYSNNAN
IL. back to topmRNA from alignment at JOTR01000015:267028..268746+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1176 ID=rna1176|Name=XM_015516786.1|organism=Diuraphis noxia|type=mRNA|length=1719bp|location=Sequence derived from alignment at JOTR01000015:267028..268746+ (Diuraphis noxia)
atgtctgaacaaaatattcataataacatacattCTGAGGCTAATGCTAA
TAATTTCTGGCTAACACAACCTCCACCTTCTTTTTCTCAGCCTCTGCCAC
CTTTTACGCAGCCTCTGCCACCTTTTACGCAGCCTCCGCCCATCCAACca
atgtataatttagattatcAAATGCCTTTTAACCACCCACATCTATCTCC
ATGCAATCAGCCAGCACAAAACTATTATATGCCTCATGGTggcaatatta
ataatcaatactaTCAAGACCAATATGTACCTCCTAATCAGAATATAAGC
AATTTATTTTCATCTCTTCCGGACAATATTGATGAAGAATACATCCTCCA
ATATATATGTCCTATACCAAAAGCTTTAAAAGACGAAACCAGTATTTGGA
TTGAAAAGTGGTTAGCCagcaaagaaaaaaatactacaattaagaatata
aaatcaacAGATATAGTAGAGGTAAGCtcccaaaataataattatatttg
ttttatatttaccaattattaatttaaatttatttttagatcaaCCAAAT
TAGCAATTATGTAAAAgaatgtaaacaattattagaaaacatgtgtaata
aaaaaatatttatggaacAAAATGTATCAACTATGTCTGAATCCGARTGG
AAAAAGGCTTGCTCTgatttaatcttaaataaagtaaataatatataaat
aatagtaatgattaaaactaaaattaactaTCATGTTTACTTTCTTTTGT
AGAAATACATAGATACCATACTAAAAAAGTTAGAYTTTGATACTGATACA
ATGTCTGAATTAAAATTTCGATTAgccaaaagaaaaaagaaaaggaATAG
ATTAAAGAGGTTTAAAtctaatctaaaaattataaaagctcAACAAAAAG
ATGAAATAAGAGAAATAAACAGAAAGATTGATGCTTGgcaaaatacatta
aatgaaaatatattacaagaaAAAAGagtaataattttcaatcatttatt
tattatttataatacatctttattttattttaggttaataaaactaaaat
tgaagCCAACATTGTCTTGAAAGGAGTTAGAGGAAAAATCGAAGATGCTA
AAAATCAGTTATCATTGTtagataatttagaaaaattaagaaaatgtagA
CTTCAAAACTGTgttaacaaaagaaaaaatccACTTCTAGAAAATTccat
aagtatataattgtaaaatgaataaataaattggtatacatattatttat
atttatttgtatagataaACTAAAAGTACTTTGGCATCAGAAATTAACAG
ACTACaataaagaagaagaagaattgaaaaatatgcttACCGAAGCTGAa
gcaaaaaaacatgaaaaacgAGAAATTGAAATTCAAGAAAAGTTTGCAGA
ATGGGATCATATTCTTTTTGGGCAGAATTTTAGTTCTCATGAAATGGTGT
TTGATAACTATACATTCCTTGAAatacggtattattattattatttggtt
ttaaatattcaaaaaataattttattcatttattataggAGAGGCTGgga
taaatatattgttgatgaaaataaaatatcagcATCTAGCAGTATTCCTT
TAGGTTGGATTTTACCAGTAGTACCTTGTAATACTGATTGGGCTAAATAT
TCCAATAACGCtaatatattgtgataaataattgcacgtataaatttaat
aaaaattgttgttttttaa back to topCoding sequence (CDS) from alignment at JOTR01000015:267028..268746+ >rna1176 ID=rna1176|Name=XM_015516786.1|organism=Diuraphis noxia|type=CDS|length=1359bp|location=Sequence derived from alignment at JOTR01000015:267028..268746+ (Diuraphis noxia)
atgtctgaacaaaatattcataataacatacattCTGAGGCTAATGCTAA
TAATTTCTGGCTAACACAACCTCCACCTTCTTTTTCTCAGCCTCTGCCAC
CTTTTACGCAGCCTCTGCCACCTTTTACGCAGCCTCCGCCCATCCAACca
atgtataatttagattatcAAATGCCTTTTAACCACCCACATCTATCTCC
ATGCAATCAGCCAGCACAAAACTATTATATGCCTCATGGTggcaatatta
ataatcaatactaTCAAGACCAATATGTACCTCCTAATCAGAATATAAGC
AATTTATTTTCATCTCTTCCGGACAATATTGATGAAGAATACATCCTCCA
ATATATATGTCCTATACCAAAAGCTTTAAAAGACGAAACCAGTATTTGGA
TTGAAAAGTGGTTAGCCagcaaagaaaaaaatactacaattaagaatata
aaatcaacAGATATAGTAGAGatcaaCCAAATTAGCAATTATGTAAAAga
atgtaaacaattattagaaaacatgtgtaataaaaaaatatttatggaac
AAAATGTATCAACTATGTCTGAATCCGARTGGAAAAAGGCTTGCTCTgat
ttaatcttaaataaaAAATACATAGATACCATACTAAAAAAGTTAGAYTT
TGATACTGATACAATGTCTGAATTAAAATTTCGATTAgccaaaagaaaaa
agaaaaggaATAGATTAAAGAGGTTTAAAtctaatctaaaaattataaaa
gctcAACAAAAAGATGAAATAAGAGAAATAAACAGAAAGATTGATGCTTG
gcaaaatacattaaatgaaaatatattacaagaaAAAAGagttaataaaa
ctaaaattgaagCCAACATTGTCTTGAAAGGAGTTAGAGGAAAAATCGAA
GATGCTAAAAATCAGTTATCATTGTtagataatttagaaaaattaagaaa
atgtagACTTCAAAACTGTgttaacaaaagaaaaaatccACTTCTAGAAA
ATTccataaataaACTAAAAGTACTTTGGCATCAGAAATTAACAGACTAC
aataaagaagaagaagaattgaaaaatatgcttACCGAAGCTGAagcaaa
aaaacatgaaaaacgAGAAATTGAAATTCAAGAAAAGTTTGCAGAATGGG
ATCATATTCTTTTTGGGCAGAATTTTAGTTCTCATGAAATGGTGTTTGAT
AACTATACATTCCTTGAAatacggAGAGGCTGggataaatatattgttga
tgaaaataaaatatcagcATCTAGCAGTATTCCTTTAGGTTGGATTTTAC
CAGTAGTACCTTGTAATACTGATTGGGCTAAATATTCCAATAACGCtaat
atattgtga back to top
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