Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107167907 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | uncharacterized LOC107167907 |
| Transcript id | XM_015517120.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107167907 |
| Genbank | XM_015517120.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107167907 | gene8558 | Diuraphis noxia | gene | JOTR01000486 76627..83849 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015372606.1 | cds12099 | Diuraphis noxia | CDS | JOTR01000486 83571..83696 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna12528 ID=rna12528|Name=XM_015517120.1|organism=Diuraphis noxia|type=mRNA|length=1108bp|location=Sequence derived from alignment at JOTR01000486:76627..83849- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ATATAAAATTAATATCATATTAAGTTATATCGTTAAGCCGCGGTCGCTGC
AGTCACATTTTTTACGTGACGCCGTGCCGATCGCGAGCACGTCTGTCGCA
ACGAAAGCTTTCGTTTGAAAACCACGCGAGTCCCATACACGAAAATCGTA
CAAATGATTGTCAATTTAAAATATTTCAAAAAACAATGGTCGGACTTTCC
CGCGTTCGGAATCTCGTCGTTTAGAGTGACGAACCCGGATCTCCGCAAAA
CTCTGTACACGTTGACGGCTTTGCAGTTGTGGTTTCAATTGTTTTCTATT
ATACTGTTGGTCATCAGCAGCGTATTAGAATGGTATATCAAAAAAGACGG
CAAGACTTCGGATCATCAATGGATCGGTTATGATCAGTTATACTTTAATA
CCTCGCTGCTATTCCAAATATGTGACGTCATATTGTCGATGTACGCGAGT
TATCATTTTCTATGGAATGCCACGACCCGATACAATAACATACAAGACGT
CAGGATATGGATAATCGTCAACAATCTTTATATTTTGTCGACGGTAGCGT
GTTTTCTATTCGTATGGTTCAAAGTTGGGAGTATCGTAATATGCATTAAA
TCGATGATCATATTGACGTTTGCCAATTACAAGATATACATCGTTCATAA
GATATACAAAGACGAAAAATCGTCATACATTTTTTTAGAACAAGGTCAAT
CGCCAATACCTAATTCACAAAAATCTGTCGACGGATACGATCTGTATTCT
CAGAATTACGACACCGTGGAATTTGAAGTGGAATCGTCTGAAAAATTCAC
CTTCGGATCACTTCCCTATACGGTGAATCAATAACTGCAGATAATATACA
TATCTAGATGGTCAAGGATGGTCGCAGAAATGTAAGCCATGTAGGGAAGG
CAAAGTAAAAACTTTTTGATAAAACAGTATTACCATATTTTTTTTACAAG
TGATAAAACATTCATATTGGCTAAAAAAATAGAGGGCATGCKCCTTGTGG
ACGATTATATCTAGAAGGTCTAGATGGTTGTCGAAATATTACAAATATAT
AAACAATATACATATATAATATGTATATATAAATATATTGATATTAAAAT
AATGTTTC back to topprotein sequence of XM_015517120.1 >rna12528 ID=rna12528|Name=XM_015517120.1|organism=Diuraphis noxia|type=polypeptide|length=227bp
MIVNLKYFKKQWSDFPAFGISSFRVTNPDLRKTLYTLTALQLWFQLFSII
LLVISSVLEWYIKKDGKTSDHQWIGYDQLYFNTSLLFQICDVILSMYASY
HFLWNATTRYNNIQDVRIWIIVNNLYILSTVACFLFVWFKVGSIVICIKS
MIILTFANYKIYIVHKIYKDEKSSYIFLEQGQSPIPNSQKSVDGYDLYSQ
NYDTVEFEVESSEKFTFGSLPYTVNQ. back to topmRNA from alignment at JOTR01000486:76627..83849- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna12528 ID=rna12528|Name=XM_015517120.1|organism=Diuraphis noxia|type=mRNA|length=7223bp|location=Sequence derived from alignment at JOTR01000486:76627..83849- (Diuraphis noxia)
ATATAAAATTAATATCATATTAAGTTATATCGTTAAGCCGCGGTCGCTGC
AGTCACATTTTTTACGTGACGCCGTGCCGATCGCGAGCACGTCTGTCGCA
ACGAAAGCTTTCGTTTGAAAACCACGCGAGTCCCATACACGAAAATCGTA
CAAATGATTGTCAATTTAAAATATTTCAAAAAACAATGGTCGGACTTTCC
CGCGTTCGGAATCTCGTCGTTTAGAGTGACGAACCCGGATCTCCGCAAAA
CTCTGTACACGTTGACGGCTTTGCAGTTGGTGAGTATAATATTGTTTTAT
GTAATAATATTATGATATTGTTTGGGTTAGTTAGCCAGCCAGTTAACGAC
GCCAAGCACTTGGTCGCAGCCAAATAGCAGGCCCAGACTAACGTAATACC
TACTTATATTTATATAAATATGCGCGAGATGACTAAAATATATTATTATT
GTTTGCTCTCTTCAGCAGCAAGATATTAATTTAGGAGCGTCATATTTGTA
TAGGGAAGCATCAATATTGGTTGACGTTTTTTGTATTGCAGTAGATAAAT
ATAGCCATCACGACTATTCATTTTTTACTATAGTACTACATTGTTATATT
CATTCTATAAACATTTTAGAAAAGTTAATTTAAAAGAAATAATGATATAT
AATGTTGAATTCTGTAATATGAACTGTATTAAAATAAAAAATAGGCAAGT
ATGGAGGTAAATACTAATAACTTTATTTTTTCTAAAATGGTACTTTGTTT
GCTTGTTTTTTTTCAATAACATATAATATTATCATAAATCACGGTAAGTT
AAATGTGTAATATAAGATTATTATTGTTTGAAACTTGTATCCTGACTAAT
TTTAACTCTGAGTTGAAACACATTAATATAGAACGAGATTATTATTATGA
TAATCATAAATCAATATTAATAACATATTGTACATTGTACAATATAAAAT
AGATGATTCAATATTAGTATGCTATAACATGGTATATGTATCAATGTATC
ATAATTCATAATATTCGAATAAGAAAACCAATATTATTGTGATATACTCG
TATTTTATAGTTTTTAATTTATATATATTTTTGATTTACTTATGATAAAA
AAAAAATAATAATAAATACAATACTTTATATTTGGACAAACTTACTAGTA
ATTTTATATTATTCAGTAAAATCTAAATTTGTTCAATGTAATTTCAGAAT
TCTCGATTGTTATTAATATTGGTTAAATGTTTGCTCGGTGTTAATAAAAA
AGTGTATAATTTAATTTTAACTAAAAATGTTGTTCAGTGTAAATAATGTA
AATCTTAAATTCATTGTATTATTAATATATGTATTATATGTTAATAATTT
TATAACAAAATAAGAATTATATTATAGTTTTAAGAGTAAAAACAGATTGC
TCCGAAGTGGTTCCCCYGAACGATCGGCCTGCAGTCGATCGTTGTACTGA
GTACTGACTCGTAATGTTGTAATTTATGTGTTGGTTTTTATTTTAGTGGT
TTCAATTGTTTTCTATTATACTGTTGGTCATCAGCAGCGTATTAGAATGG
TATATCAAAAAAGACGGCAAGACTTCGGATCATCAATGGATCGGTGAGTA
ATTGAAAATTGTCACGTCCATTATTGCAGTTAACGTATACCTACGTAGAT
ATTATATCCGAATAGTCATACAGTATATTATTATATTATTGGTTTGTGTT
GGCTAAGCCAGCGGAAGATTCCTTGAAATGTGTTTTGAGATATACATAAT
ATGTGCTTTAACAAATATTGACGTTATGGTTTCACCAGACCAATAATAAC
ATTCACATACGTTCGGTAAACGGCGCAACATTATATGTCGCAAGAGCATC
CATTTTCCTTCAAGAATGAGAAACTGTTTTCCTCCACAAAAAAGGTTCAT
TACCTACCGTTTTTCTCAAACATTTTTTTTTTTGGACTAAAATTATATCC
ATTTACATCCATATATTATAATATTTATTCGATATTTTAGCCGGCACCAG
TGTTGTACGTACCTACCATATTATAAAGAGACAATTTATCACAGTCGATT
ACATCGTAACATCGTAACTTTGAATCGAAATTAAGATAGGAACGTAGGTA
CCTATTACATATTTTATTTTACTTCTAATATAGTTCATAACGCAAAGGAT
TTTTTTTTCGTTATAATATATGACTTAGAATTATATTTATTATATTTTTG
ATTCATTATTTAAGGACAATGTTATAATCTCATTATTAGAGTGACCGCAA
TATCAGTTATTTAAAAAATATAAGTGTGTTGAAAAAATCATTCAACTGAT
TGTTCCACGGTACATGTTATTATTACTCATCGCAAGGATGCGATTTTGTG
TGCAATCGTGTTGTATTTTCTCAATTATAAGAAGTATAGATTTATGCCAT
CACATTGCATTTGTCCAGTCTCCAAGAAATCTATCATCACAATAAATAAT
AATATATTAATAATTAATGTAGGTACGATTAATATGACGACATTTGTAAG
CAAATATCACGAAATGATTATAAATTTATAACAATAGGTATACCTATACC
TAGGTAAGCATTTTTTTTTCATTTAATATTACGTCCGTTTAAAAATACTT
GACAGAAATATCGTACTGACGCGTAATGTTTGAATGTGTGTGCATAAATT
ATTATTATAATAATTATTTCTCTGCTAATATTACTTGTGATGTTTCACAG
GTTATGATCAGTTATACTTTAATACCTCGCTGCTATTCCAAATATGTGAC
GTCATATTGTCGATGTACGCGAGTTATCATTTTCTATGGAATGCCACGAC
CCGAGTAAGCACCACCACGTAAAACTAAATACACTGCACTATACCTGCTG
CTTATTTTTATGAAGTTATATTTCTTATTAATATTGTATAATGTATGGCG
AAGGTTTCACGTGACATCGTGAGTATCTATAGAATTTGTAAAATGTTATG
ATWGGCGAGATAAAAATCTTTCCATTATTACTTTTGACGTATTTTAGAAA
TTCAATTAGTTAATGTCCTATATATATATATATATATGCATGAATGGGAA
AATACTTCTTATTATTGTCATGTTGGTACGCGATAAATAGATAATAATTT
ATTAKTATTTTAAGACGGAGTACTTATAGGTACCTAATTATATGGTATTC
ATCAATATAATAATATGATATTARCACGTCATCATCGTTTGTTTTACACC
AAATGCATCGAGTTTTCAGTCTACTACGCATGTTATGATGATTTTAATCG
ACTCCAAAACACAAATATGATCAGGCATCTCCGTTTGATCGTCACCACTG
AGAGGCTACAGTGTCCTAACAYAATATAACACACTCAGCTAACATTTTAC
CAACATGTACCATGCAATAACACGTATACTTATAATGTCATAATATTTCG
TATGCTATTATGATGTTTATTATTTAGTCATGTGATACGGAGGGATTTTC
CAAAAATTAATTTTTTTCTAAAGCGTTTAAGAACATGTTGTTACGTACGA
ATACATTAGATTATATTTTTATTTAGTTACCATAATAGTCTATAACTAAT
TATTACTAAAACTAATTTTAATATTTTTAATTTCTATTTTTTTTAGAAAT
TTTAATTGATTCACTATAAACTTTTTTGGATAAAATTATTGTACGCAATA
GCTAATAATWTAAGCGCTATAATACCTATACTACAAGAGAGTTTAAAATC
GATAAATACCTGATTAAAAGAATATAATATAATCAATTACAGTAGGTGTT
GACGTTTGAAAATTGAATAAAATACAAAATCCCTATCAAAGTCGGCCTAC
GAATTATATCGGTGTGGAGGAAGGATGCTGAACGTAAAATAAACGCGTAA
TTTATACCTATAAGTACTTGGAGTGTTTAGGCGATTAGAGATAGGTACGA
TGCAATATACCGTATTATACATTATCGTTTTGGCCGTAAAAAAAGGATCG
GTACCGAGTTTACATAATATACGTATTATATTATTCCTATATAGCTGAAA
CCATTTTACTGTCTGCACTCTGCCGAATAACAATAATATTATACTTGCCG
GATTGAAAAAACCTTGCTCACTGGCCAAGTTTACAAACGCATTCAATATT
ATATCGTTTTTTTTTCCAAACGAAATTCTACATTTATGCACGTTGGTGAA
AAATAAAACGATTTCAACTAAAATTTAACAATAAACTATAATAATTATTG
AAAATCAAAATCATCAACATATTTTTACCACGAGTTCGCTTTTATTATGT
AGTTATACGATATTCAAATAATAAAGTTGGCTTTCGCTTGAAATATAGCG
ACCATGCGAGAAGTGAGACATCGATCGTATATACATCGCCGCCGAGAACG
GTCAGACACTAATTATTATTATACTTGGGTTCATTATACCGGAGGTAGCT
ATAAGTATGTGGCCCGTCAAACATTTTTCAGGAACTATATGATATCGGTT
GCGGCTTATGTTCATAACATATTATGGATATTTCTACGATATTACAAACG
TCGGAAACTTAATCAATAGTGATCTCAAAATATAATATTATAAAATTATA
CACTGTTATAATCCTATACTACCCTTTATCAGCGTGAAATGTCTACATTT
AATAATAATATTCTAACTTAAATTTATACGACAGATTACGGTCTCAATAA
TGTTTTCCTTGAGTATTATTAATGTGTATTATGTAAAACAATATAAGATA
TGCCGACTTTGAGTGTGTCTTTCGACGAGTTTTTGTTGCACGAACCGTTT
AAAATCAACACAYTTTAAAATAGTAAATATTATTAATTATTATATTCAAT
AATTCAAGTTTTAATTTAAAATGTATACGCGTATACCTATATGGTGGAAA
TGTATAAAATATTTTTCTTCGCGTTTTAAATATTTTGTTTTCACGTTTCT
CTAGTTATTATATTTATATAAGATACCTAAATAATAACTGGAGAGTATTA
TTTTACTCGTGCAGTCGTGCCGAACGGTCTTCAAAATGTTATAGTGGTCG
TTAGCATGTTACCATAATATAATATTTATAAGCTTCTAACGAAAATCTCA
AATCTCATAGCAATCTSGTGTTCTAAAATTCATTTACTATTAATATCTAA
TATCAATACACCTAATTAATATTTTATTTTTGCCGTTTTCTTATAGTCAT
TGCTTTATCTTAATCAGTAGAACGAATTAATTTCGACTCGTATCTAGGAG
ATAAACAAACAATTTCTGCTATCACTAAAACGTGGATTTGTATGCACTTG
CATATTATTTATTCWGGCTGATCGTATAATATGCAAAAACGAGGACAAAA
TTTGTTTTATAACATAAAGATTTAAAAAAATAAAACTTTTTGCATATTTC
GATATTTTTCTATTTTGAGGGCTTATTTTACAATTTTAATCTTTTAGTAC
ATATTTCGATGTTTTTTTTTTCAAACATTCTTGAAAAATATAGTATTATA
ATATAAGAAAACAATTCTATATTTTTATAGTTTCGATTAATATCAAAATA
AATTAATACGTATACTTGTAGATATAAACAGTCTTCCCAAGTATGACTTT
AGATCAATAATCGGGGAAATAAAATATGTATACTAAAATAAGAAATATTT
TTAAATATACTGTATCAATTAAATGTTTAAAAAACGAATTTATTTCTGAT
ACATTTTTTATGCATATTTTTTTTTCGTGCACATTTTAACATTTTGGTGG
ATATATTTGTGCATATTTAAGATTTTTTAGCGCATATTTTGTTGGTTTTT
AAATACATATAAATCCACGTTCTAACTATCATATAGTAATCTTCATATTA
GGTGTAATATAATTTAAGATAAACCACAAACCCAGATACTACCTATAACT
GGATTGCATTTTGTTTTTCTACCGACACCGTAATTATTCATAAAATATTT
CTATTGAACAGTGTGTGTGTGTTTTTTTAAATAATTATTTATACCTACCC
GACATTACCTCTATAACATATTGTAAAGTTCTTTTGCTACGCTTTTATTT
CAGTACAATAACATACAAGACGTCAGGATATGGATAATCGTCAACAATCT
TTATATTTTGTCGACGGTAGCGTGTTTTCTATTCGTATGGTTCAAAGTTG
GGAGTATCGTAATATGCATTAAATCGATGATCATATTGAGTAAGACATAT
GATAATTTTATAAGTATAACAATATGAAGATTATCGTTGTTGGCATGAAA
AAATCTTTTATGGGTTAAACTTAACTTTCCACAAGAGACCAAAAACGTTT
AAAAAATAAAGTATATATTTTGACGTATAATAAATATGAAGTTTTACTAG
TAGCATAGAAGGTTTTTGAATAATAGTTGATAACATATTATAAAATGTTT
TATATCACATTGAAGGAATTTCATGAACAATTTATAATTAATAACACACA
AAAGGATTATTTATTATTTTTCATTAAATCTTTGATGAAAAGAGGCGTTA
ACACATTTATTAGATAATATTTTCAAATCAAAGCTTTTTTTCTGAAACTA
TTGACTCCAACACCTCAAAAACGTAAATTTGTCACAACGGTGGTTTTTTT
TGTGTCATTGATGTATGAATTGCAATTAATTTATTACTATCCTTATTTTC
CCATATCTGTCTATCGTAATTTCGTCACTTATAATAATTGATGTGTTTAT
AGCGTTTGCCAATTACAAGATATACATCGTTCATAAGATATACAAAGACG
AAAAATCGTCATACATTTTTTTAGAACAAGGTCAATCGCCAATACCTAAT
TCACAAAAAGTAAGTAGGCCGTATGCATATTGGACATGTGAAGTTATACA
AAATTAACTACCTATATTTTTCCATTTTTTTACACCAGTCTGTCGACGGA
TACGATCTGTATTCTCAGAATTACGACACCGTGGAATTTGAAGTGGAATC
GTCTGAAAAATTCACCTTCGGATCACTTCCCTATACGGTGAATCAATAAC
TGCAGATAATATACATATCTAGATGGTCAAGGATGGTCGCAGAAATGTAA
GCCATGTAGGGAAGGCAAAGTAAAAACTTTTTGATAAAACAGTATTACCA
TATTTTTTTTACAAGTGATAAAACATTCATATTGGCTAAAAAAATAGAGG
GCATGCKCCTTGTGGACGATTATATCTAGAAGGTCTAGATGGTTGTCGAA
ATATTACAAATATATAAACAATATACATATATAATATGTATATATAAATA
TATTGATATTAAAATAATGTTTC back to topCoding sequence (CDS) from alignment at JOTR01000486:76627..83849- >rna12528 ID=rna12528|Name=XM_015517120.1|organism=Diuraphis noxia|type=CDS|length=681bp|location=Sequence derived from alignment at JOTR01000486:76627..83849- (Diuraphis noxia)
ATGATTGTCAATTTAAAATATTTCAAAAAACAATGGTCGGACTTTCCCGC
GTTCGGAATCTCGTCGTTTAGAGTGACGAACCCGGATCTCCGCAAAACTC
TGTACACGTTGACGGCTTTGCAGTTGTGGTTTCAATTGTTTTCTATTATA
CTGTTGGTCATCAGCAGCGTATTAGAATGGTATATCAAAAAAGACGGCAA
GACTTCGGATCATCAATGGATCGGTTATGATCAGTTATACTTTAATACCT
CGCTGCTATTCCAAATATGTGACGTCATATTGTCGATGTACGCGAGTTAT
CATTTTCTATGGAATGCCACGACCCGATACAATAACATACAAGACGTCAG
GATATGGATAATCGTCAACAATCTTTATATTTTGTCGACGGTAGCGTGTT
TTCTATTCGTATGGTTCAAAGTTGGGAGTATCGTAATATGCATTAAATCG
ATGATCATATTGACGTTTGCCAATTACAAGATATACATCGTTCATAAGAT
ATACAAAGACGAAAAATCGTCATACATTTTTTTAGAACAAGGTCAATCGC
CAATACCTAATTCACAAAAATCTGTCGACGGATACGATCTGTATTCTCAG
AATTACGACACCGTGGAATTTGAAGTGGAATCGTCTGAAAAATTCACCTT
CGGATCACTTCCCTATACGGTGAATCAATAA back to top
|