Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107167922 |
| Model evidence | Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | vacuolar protein sorting-associated protein 51 homolog |
| Transcript id | XM_015517136.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107167922 |
| Genbank | XM_015517136.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107167922 | gene8571 | Diuraphis noxia | gene | JOTR01000488 135058..136918 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015372622.1 | cds12116 | Diuraphis noxia | CDS | JOTR01000488 136844..136906 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id111241 | id111241 | Diuraphis noxia | exon | JOTR01000488 135058..135098 - |
| id111240 | id111240 | Diuraphis noxia | exon | JOTR01000488 136600..136734 - |
| id111239 | id111239 | Diuraphis noxia | exon | JOTR01000488 136844..136918 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna12546 ID=rna12546|Name=XM_015517136.1|organism=Diuraphis noxia|type=mRNA|length=251bp|location=Sequence derived from alignment at JOTR01000488:135058..136918- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TTACATTCTAATATGCAAACCTTAGCGTATGAAAACTGCAACAAATTTAT
TTTGGCTGCCGATATAATTGGAAAAATGAAAAATGATTGTAAAACTATAG
AAGGGAAAATGGAATTGCTTTTATTAATTCACAAGGAATTCTTGTTACGC
TCAAATAATTGCCTATGTGAATCGCACTTGAATAAATTGCAAGTTGAAGA
TATAAATCAGCATTCAAGTAATTTACTTCACGGGCATTAACTAACGTGAA
G back to topprotein sequence of XM_015517136.1 >rna12546 ID=rna12546|Name=XM_015517136.1|organism=Diuraphis noxia|type=polypeptide|length=76bp
MQTLAYENCNKFILAADIIGKMKNDCKTIEGKMELLLLIHKEFLLRSNNC
LCESHLNKLQVEDINQHSSNLLHGH. back to topmRNA from alignment at JOTR01000488:135058..136918- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna12546 ID=rna12546|Name=XM_015517136.1|organism=Diuraphis noxia|type=mRNA|length=1861bp|location=Sequence derived from alignment at JOTR01000488:135058..136918- (Diuraphis noxia)
TTACATTCTAATATGCAAACCTTAGCGTATGAAAACTGCAACAAATTTAT
TTTGGCTGCCGATATAATTGGAAAAGTAATAGATATTTAAACTAACAAAT
ATAATATGTTATATATAAACATAATAATATTACAATAAAATACCAAATAC
ATTTTAATTTTTAAACTTTGTATTTTTGTTGTAGATGAAAAATGATTGTA
AAACTATAGAAGGGAAAATGGAATTGCTTTTATTAATTCACAAGGAATTC
TTGTTACGCTCAAATAATTGCCTATGTGAATCGCACTTGAATAAATTGCA
AGTTGAAGATATAAATCAGGTAAATTTAGTTTGATATGCTTATATTATTT
AATTTGATTATTAAAATATTTAAGAGTAGGTATTTCACAAATATGATAGA
GAACAAGAGAACAGAAGAGTATCAAATTGTCTCAATGTGCAAAAAAAATA
CTCAAATAGTCACTATGTTCTTTTATCTATAATTTGATCAATTTTCTACC
TAACTTTCTCTTCATGTACAATCTTTCATGTTATTAAATTATTTACAAAT
CTTAGGTTATAATGTCAAGTCTTAACACAAGTTATTGCAAATGATATTAA
AATAATAAGAATACAATCTTATGGTATGTAATTTATTATTATATATTTAT
TTATTCTCGTATGATATGATTCAGCCTTTAGTTTAATTATTTAATTTTTA
AATTGTTGTTCCACTAAATATTAATTAGCTAAATAATGTAAATCCTGAAA
AATTTGAAGAAAATGTATAATTAAAATATATCGTATCGATTGTAAATGAA
ACAAAATTTTTTTAAATAAGGGTAGTTGTATAATTATAATAATATAATAG
GTATTTCGTATTACTTTATTATAGGCACCGAATAATATGGGTACCCAATC
ATATCAGTTTATAATAACTTGATTTAATTTGAAATTGTTTAATTGAATAA
ATTATATTATACTTCACAAATGTATGTATATAAGCAATATATATATATAT
AAGTATAAATATATTAATATATATATAATAATAATATAAATATATAAATA
TATATAAGCAACTCCAATAATAAAATCAAATACAAATAATAGTAATTATT
AAGAAAATGTGTTACAGTACCAACCTATTTATTAGAGTGGTCAGTACAAA
GTAGTTTTCATCAAATTACAGTTTCTTAACTTTAAAATTATTGAAATATA
AAGTTGTTCTATAATTCTTACCTGAAACTTGCCTAACATTACTCCATACT
GAGTTGACAAAATTGATTAGAATACAAGAAGTGAATCCTGGTGTTTGCTA
TAGTTTTGGGCTCTTTAATGATATAATTATGTATAATTTCTCTAATATAA
GGCCAAAATAGTATTTAAAAATATAGGTATTTTTGAAATAAAAATTTTGT
TTCAGTAGATTTAGACCTATAAATAAGTATAAAAACTATTATGAACCCCT
GAACCTATGAATGACAATGGACATTACTCTAACATTAACAAGACATTCAA
GCCATTTGATATTCAGGATTCTCCAAATAGCTCAACAACTCCTAGTCCAT
GTCATTCTTTATTTGGATATGAGAATACAACAGCAATATAAAGTTATAAT
GTGGGTGATTCATCAAAGTATAAAATAATAAAATTGAATTAMTGTAGCTG
TTCAATATCTTCCTTCACTGAATCATCATCATCACAGTCACAACAAATAG
GCTTAACAACTAGGCGTTGAATTAAATTACCAGGAGTAATAAATAAATTT
TTATGTATTACTTCTAAAATGTCCAAACAATTTTGAATTTTGTATCTAAA
ATTTTCAATTTATGTTTCAGCATTCAAGTAATTTACTTCACGGGCATTAA
CTAACGTGAAG back to topCoding sequence (CDS) from alignment at JOTR01000488:135058..136918- >rna12546 ID=rna12546|Name=XM_015517136.1|organism=Diuraphis noxia|type=CDS|length=228bp|location=Sequence derived from alignment at JOTR01000488:135058..136918- (Diuraphis noxia)
ATGCAAACCTTAGCGTATGAAAACTGCAACAAATTTATTTTGGCTGCCGA
TATAATTGGAAAAATGAAAAATGATTGTAAAACTATAGAAGGGAAAATGG
AATTGCTTTTATTAATTCACAAGGAATTCTTGTTACGCTCAAATAATTGC
CTATGTGAATCGCACTTGAATAAATTGCAAGTTGAAGATATAAATCAGCA
TTCAAGTAATTTACTTCACGGGCATTAA back to top
|