Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| End range | 139040 |
| End range | . |
| Gbkey | mRNA |
| Gene | LOC107167978 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Partial | true |
| Product | protein halfway-like |
| Transcript id | XM_015517213.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107167978 |
| Genbank | XM_015517213.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107167978 | gene8628 | Diuraphis noxia | gene | JOTR01000496 138049..139040 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015372699.1 | cds12197 | Diuraphis noxia | CDS | JOTR01000496 138791..139040 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id111949 | id111949 | Diuraphis noxia | exon | JOTR01000496 138049..138231 - |
| id111948 | id111948 | Diuraphis noxia | exon | JOTR01000496 138293..138463 - |
| id111947 | id111947 | Diuraphis noxia | exon | JOTR01000496 138544..138719 - |
| id111946 | id111946 | Diuraphis noxia | exon | JOTR01000496 138791..139040 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna12627 ID=rna12627|Name=XM_015517213.1|organism=Diuraphis noxia|type=mRNA|length=780bp|location=Sequence derived from alignment at JOTR01000496:138049..139040- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
CCTGAATTAAGCCGTTTGATCTCATTTTCAATTACAAATAGTTATATTAA
TCGACTACTTGGTCGTTTAGAGTACATGCATCAAATTACTTGCTTAAATT
TATCGAATAATGCTTTTGGTACAGAATGGCAAGATCCTCTAGCRTTGGAA
AATCTTAAAATGTTAGCTATGTTAGATTTTTCCAATGTAAATATATCAAG
TTTACCTACCATAAAAAGTCAAGTGCCGATGTTTTGGTTGGACGTTTCAA
ATAACGTAAAAATTCATTGTGCAAGTCTTCTAGATCTTATGGAAAGATCA
AGAAATGCCAAGTACAAATTGTATTTTAAAAAATATAATGAAACATTTTG
TATGTCATCACTGTCATTTCACTGGTTCAATTCCACTGAGAAGGTTGCAT
TAAATCAAGTAGAAATTATTAACAAGTTATACGAAGATTGTCCATTGAAT
TGTAGTTGTAAGTGGCATGGTATAGAAATGGTACAAGAAACAAAGACACT
ACATACCGTAGAAGTAGATTGTTCAAATAAACAACTTTCAAGTTTACCGG
AAAACYTACCAGAAAACACTGTGTTATTAAATGTCACTAACAATAATATC
ACCAATATAGATGTATTAGTAACAGATCAAACTTACAAAACTTTGAGATT
TTTTTATGCTGATGAAAATAAAATATCTAACCTTTTGTCATTGGAAGGTT
CAACTTTTATAGAAAACTATGCTGTTCTGAGTTTGAAACTAAATCAATTG
AAAACAGTAAGTATAGTTCCATTACAATAA back to topprotein sequence of XM_015517213.1 >rna12627 ID=rna12627|Name=XM_015517213.1|organism=Diuraphis noxia|type=polypeptide|length=260bp
PELSRLISFSITNSYINRLLGRLEYMHQITCLNLSNNAFGTEWQDPLALE
NLKMLAMLDFSNVNISSLPTIKSQVPMFWLDVSNNVKIHCASLLDLMERS
RNAKYKLYFKKYNETFCMSSLSFHWFNSTEKVALNQVEIINKLYEDCPLN
CSCKWHGIEMVQETKTLHTVEVDCSNKQLSSLPENLPENTVLLNVTNNNI
TNIDVLVTDQTYKTLRFFYADENKISNLLSLEGSTFIENYAVLSLKLNQL
KTVSIVPLQ. back to topmRNA from alignment at JOTR01000496:138049..139040- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna12627 ID=rna12627|Name=XM_015517213.1|organism=Diuraphis noxia|type=mRNA|length=992bp|location=Sequence derived from alignment at JOTR01000496:138049..139040- (Diuraphis noxia)
CCTGAATTAAGCCGTTTGATCTCATTTTCAATTACAAATAGTTATATTAA
TCGACTACTTGGTCGTTTAGAGTACATGCATCAAATTACTTGCTTAAATT
TATCGAATAATGCTTTTGGTACAGAATGGCAAGATCCTCTAGCRTTGGAA
AATCTTAAAATGTTAGCTATGTTAGATTTTTCCAATGTAAATATATCAAG
TTTACCTACCATAAAAAGTCAAGTGCCGATGTTTTGGTTGGACGTTTCAA
GTAATTAAGCTCATCAATTCATGTAAAAATTAAAACTGTTTTAAACTTTT
TATTTGTCTAATATTTTTTAGATAACGTAAAAATTCATTGTGCAAGTCTT
CTAGATCTTATGGAAAGATCAAGAAATGCCAAGTACAAATTGTATTTTAA
AAAATATAATGAAACATTTTGTATGTCATCACTGTCATTTCACTGGTTCA
ATTCCACTGAGAAGGTTGCATTAAATCAAGTAGAAATTATTAACAAGGTA
ATATTAGTTCTTAAATATTTAAATTTTTAATCAACAAAGTATAAGAATTA
CCTTTTTAATTTCTGTTAATAATTTAGTTATACGAAGATTGTCCATTGAA
TTGTAGTTGTAAGTGGCATGGTATAGAAATGGTACAAGAAACAAAGACAC
TACATACCGTAGAAGTAGATTGTTCAAATAAACAACTTTCAAGTTTACCG
GAAAACYTACCAGAAAACACTGTGTTATTAAATGTCACTAACAATAATGT
AAAAAATTGCAAATATTTAAAATTTAAATAATATATTTTTGAGTGTTACT
GTTTTATAGATCACCAATATAGATGTATTAGTAACAGATCAAACTTACAA
AACTTTGAGATTTTTTTATGCTGATGAAAATAAAATATCTAACCTTTTGT
CATTGGAAGGTTCAACTTTTATAGAAAACTATGCTGTTCTGAGTTTGAAA
CTAAATCAATTGAAAACAGTAAGTATAGTTCCATTACAATAA back to topCoding sequence (CDS) from alignment at JOTR01000496:138049..139040- >rna12627 ID=rna12627|Name=XM_015517213.1|organism=Diuraphis noxia|type=CDS|length=780bp|location=Sequence derived from alignment at JOTR01000496:138049..139040- (Diuraphis noxia)
CCTGAATTAAGCCGTTTGATCTCATTTTCAATTACAAATAGTTATATTAA
TCGACTACTTGGTCGTTTAGAGTACATGCATCAAATTACTTGCTTAAATT
TATCGAATAATGCTTTTGGTACAGAATGGCAAGATCCTCTAGCRTTGGAA
AATCTTAAAATGTTAGCTATGTTAGATTTTTCCAATGTAAATATATCAAG
TTTACCTACCATAAAAAGTCAAGTGCCGATGTTTTGGTTGGACGTTTCAA
ATAACGTAAAAATTCATTGTGCAAGTCTTCTAGATCTTATGGAAAGATCA
AGAAATGCCAAGTACAAATTGTATTTTAAAAAATATAATGAAACATTTTG
TATGTCATCACTGTCATTTCACTGGTTCAATTCCACTGAGAAGGTTGCAT
TAAATCAAGTAGAAATTATTAACAAGTTATACGAAGATTGTCCATTGAAT
TGTAGTTGTAAGTGGCATGGTATAGAAATGGTACAAGAAACAAAGACACT
ACATACCGTAGAAGTAGATTGTTCAAATAAACAACTTTCAAGTTTACCGG
AAAACYTACCAGAAAACACTGTGTTATTAAATGTCACTAACAATAATATC
ACCAATATAGATGTATTAGTAACAGATCAAACTTACAAAACTTTGAGATT
TTTTTATGCTGATGAAAATAAAATATCTAACCTTTTGTCATTGGAAGGTT
CAACTTTTATAGAAAACTATGCTGTTCTGAGTTTGAAACTAAATCAATTG
AAAACAGTAAGTATAGTTCCATTACAATAA back to top
|