Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107168500 |
| Model evidence | Supporting evidence includes similarity to: 1 EST, 25 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | tropomyosin-1, transcript variant X1 |
| Transcript id | XM_015517937.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107168500 |
| Genbank | XM_015517937.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107168500 | gene889 | Diuraphis noxia | gene | JOTR01000017 124989..127952 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015373423.1 | cds1248 | Diuraphis noxia | CDS | JOTR01000017 127839..127952 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna1281 ID=rna1281|Name=XM_015517937.1|organism=Diuraphis noxia|type=mRNA|length=982bp|location=Sequence derived from alignment at JOTR01000017:124989..127952- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGCTATTAAGAAGAAGATGCAGGCCATGAAGATGGAGAAGGATAG
CGCCATGGACAAGGCCGACACTTGTGAAGGCCAGTCCAAGGATGCGAACC
TTCGTGCTGACAAAGTGAATGAAGATGTGAGAGATTGTCAAAAGAAATTG
ACTCAGGTAGAAAGTGATCTGGAAACAAACAAGAATAAGTTGGAAGAGGC
CATCAAACAGTTAGAGGATAGAGAAAAGGCACTTACTGCGGCCGAAAGTG
AAGTAGCTGCTTTGAACAGGAAAGTCCAGATGATTGAAGAAGACCTTGAA
AGATCCGAAGAAAGGTCTCAAGCTGCTGCATCGAAATTGGCTGAGGCTTC
TCAAGCAGCTGATGAATCTCAACGTATGTGCAAAGTACTAGAAAACCGTA
GCCAGCAAGACGAGGAACGTATGGACCAATTGACTAACCAATTAAAGGAA
GCTCGTCTCTTAGCTGAAGATGCTGATGGAAAGTCTGATGAAGTTTCGAG
GAAACTTGCTTTTGTTGAAGATGAACTTGAAGTAGCAGAAGACCGTGTGA
AATCTGGAGACTCAAAAATCATGGAGTTGGAAGAAGAATTGAAAGTTGTC
GGAAATAGCTTGAAATCGTTGGAAGTTTCTGAAGAAAAGGCCAATCAACG
AGTGGAAGAGTACAAGCATCAAATCAAACAACTCACTGTAAAATTAAAGG
AGGCTGAAGCTCGTGCTGAATTTGCTGAGAAGACCGTTAAGAAACTGCAG
AAGGAAGTTGACAGACTTGAAGATGAACTCGGCCTCAACAAAGACAGATA
CAAGTCTTTGGCTGACGAGATGGATTCCACGTTTGCTGAATTGGCTGGAT
ATTAACCCTCTAGACTTAGCCACATATTAAAAGGAATTTACATTTGAAGT
AAATAATTACCCAATGATTTTATCAAATAATATTACCATCATCAATTCTA
TTAATAAATCAAAAGAATATTAAATTAAATTA back to topprotein sequence of XM_015517937.1 >rna1281 ID=rna1281|Name=XM_015517937.1|organism=Diuraphis noxia|type=polypeptide|length=285bp
MDAIKKKMQAMKMEKDSAMDKADTCEGQSKDANLRADKVNEDVRDCQKKL
TQVESDLETNKNKLEEAIKQLEDREKALTAAESEVAALNRKVQMIEEDLE
RSEERSQAAASKLAEASQAADESQRMCKVLENRSQQDEERMDQLTNQLKE
ARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDSKIMELEEELKVV
GNSLKSLEVSEEKANQRVEEYKHQIKQLTVKLKEAEARAEFAEKTVKKLQ
KEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY. back to topmRNA from alignment at JOTR01000017:124989..127952- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna1281 ID=rna1281|Name=XM_015517937.1|organism=Diuraphis noxia|type=mRNA|length=2964bp|location=Sequence derived from alignment at JOTR01000017:124989..127952- (Diuraphis noxia)
ATGGACGCTATTAAGAAGAAGATGCAGGCCATGAAGATGGAGAAGGATAG
CGCCATGGACAAGGCCGACACTTGTGAAGGCCAGTCCAAGGATGCGAACC
TTCGTGCTGACAAAGTAAACACAATAAATATTACAAGTTAACATTTTTAC
TTAGTATAAACGTTCTTTTCAATTAGGTGAATGAAGATGTGAGAGATTGT
CAAAAGAAATTGACTCAGGTAGAAAGTGATCTGGAAACAAACAAGAATAA
GTTGGAAGAGGCCATCAAACAGTTAGAGGATAGAGAAAAGGCACTTACTG
CGGTAAGTTAACGATAAGTATATTAATGTACATAAGATGTTTTAATATAT
ATAACTTGTTTAAAGGCCGAAAGTGAAGTAGCTGCTTTGAACAGGAAAGT
CCAGATGATTGAAGAAGACCTTGAAAGATCCGAAGAAAGGTCTCAAGCTG
CTGCATCGAAATTGGCTGAGGCTTCTCAAGCAGCTGATGAATCTCAACGG
TAGGTTAAAGACATTAATTTAATAATATCTATGCACTATTGATACAAATC
ATATTTTTAGTATGTGCAAAGTACTAGAAAACCGTAGCCAGCAAGACGAG
GAACGTATGGACCAATTGACTAACCAATTAAAGGAAGCTCGTCTCTTAGC
TGAAGATGCTGATGGAAAGTCTGATGAAGTAATAATAAATAATAACATAA
CCAATTAGAAAAAGTACTAAAAAAAAATTAAATTTAAGGTTTCGAGGAAA
CTTGCTTTTGTTGAAGATGAACTTGAAGTAGCAGAAGACCGTGTGAAATC
TGGAGACTCGTAAGTAAAACATTGAATGCATACCTACTATATACGATATT
ATTGAAATCGTAATTTATAGAAAAATCATGGAGTTGGAAGAAGAATTGAA
AGTTGTCGGAAATAGCTTGAAATCGTTGGAAGTTTCTGAAGAAAAGGTAA
TTAGTGTGAAAGTATTAAGATTATAAATGATAATAATTTTTTTTTAGGCC
AATCAACGAGTGGAAGAGTACAAGCATCAAATCAAACAACTCACTGTAAA
ATTAAAGGAGGTAAACTTTCAAATTTACCTACATATTATAATATTATATT
TCACAACTAAAACCTTGGAAGAACATAATATCTTATACAAATATTTATTT
TATAATTTAGGCTGAAGCTCGTGCTGAATTTGCTGAGAAGACCGTTAAGA
AACTGCAGAAGGAAGTTGACAGACTTGAAGGTAAGTCCCACGCTTTAATT
TTCGCAAATAATATATTTATACAAAATGCTATATTAATATATTGTTTTAT
ATATTAGTCTAGTTCAATGGAATATTTGCAGCTATATACTTATGCTTTGT
TATTGTTAATATTTTATTTTTAATAGCTTATAACATTTAGTCGATCSGGG
CCTTGTTTATCAATGTGTTATTTACGTTTGTTTTGTACAATAATGTGTTG
TTTTTCAGATGATCTCTTCAAAGAGAAAGAAAAATCCAAAGAAATCACGG
ATGACTTGGATTCGACATTTGCTGAACTCACTGGCTACTAACCAAATACA
AATTCTGCATAGCCTTCACTTGTTTTCTTCTTGTTTTTTATGTTCGAGTT
TTGTCATAAACCAACGTAGCTTTTTGTAAAAATAATGCTTTTTATTTTTA
TTTTTTCACATAATTTGCTTTTTTGTCGTTTTAATATGTTTTGTCTCCAG
TTGTTGCTGTACAAATTCGCTTCTATAACTTCCAGGTACAATAATAGTTT
AATATTTAAAAATAATAATAAAAACATTGACGCATGTTATAAAATATGAT
CTTTTTATATTATGTGAATACCGTTTCATATTTATTATGTAATCAATGGT
GTCATTTTAGTTTTTAATAAAAGGGAGCAAAAGTTTTGACCAGCCAATAT
AATATCTAACTGAATAAAATAAAAACAGATCGCTATTAGCTCGAAAGCTA
ATTTCTATTTATATGTTTATCTCAATCAAATTTCTATCTTGCATAACTTA
ATGGCAAATATAGCCTAATTATATATATAAAAAAATGAAAACGTAGAAGA
GCTAAATAATTATGGTATCTTTCATTATAATATTATATATTTCAAGAATT
GAACAAATTAAATTATAATATGAAACACGACTGATAAAACGTAATAGAAA
AATGCAAATAGGTACCTTCAATTATAGAGTTTTTTTTTCGAAATAATGGA
TATATTTAAGACTAATCGTTTTTTTTAGCTATAACACTAAACGTATTAAT
TATTAATGTGACATTATATTTTTTAGTGCCCATACAATAGTATATTTTCT
CAAAATTTGAAATATTATAGTTATGTTATTCCATCAACACACAGGCCAAC
AATTGAAATGTTTTAACTCATCTCATCCCCTAAAATGACGCCACTGATGC
AGTTAGTTTTTATATGAATTTCAAATATTTGTTATTTGTACATCTTAATT
AGAGTTTTTGAGCAAAACGTAGATGGTTTATTACAAATATTGGTGTTTTA
AATATTAAATTTAATCATCCCTCAATGTTTTTTTTCTAAAAAAAAATATA
TATTTATATATATATTTGTATTTTTAAAAACTAGAGAAATTTGGTTTTGA
CCACATTTTCACAATTAGGTATAAAAGAAAATTTATTATAAATGTTTTAA
ATTTAAATTTATTTTTATGGTTGAACTCAATTATTAATTTGTTTACTTTG
TTTATTTAAAATAATTCTTTACTTTTGTATTACAAGAATCTTATTATTTT
TCAGATGAACTCGGCCTCAACAAAGACAGATACAAGTCTTTGGCTGACGA
GATGGATTCCACGTTTGCTGAATTGGCTGGATATTAACCCTCTAGACTTA
GCCACATATTAAAAGGAATTTACATTTGAAGTAAATAATTACCCAATGAT
TTTATCAAATAATATTACCATCATCAATTCTATTAATAAATCAAAAGAAT
ATTAAATTAAATTA back to topCoding sequence (CDS) from alignment at JOTR01000017:124989..127952- >rna1281 ID=rna1281|Name=XM_015517937.1|organism=Diuraphis noxia|type=CDS|length=855bp|location=Sequence derived from alignment at JOTR01000017:124989..127952- (Diuraphis noxia)
ATGGACGCTATTAAGAAGAAGATGCAGGCCATGAAGATGGAGAAGGATAG
CGCCATGGACAAGGCCGACACTTGTGAAGGCCAGTCCAAGGATGCGAACC
TTCGTGCTGACAAAGTGAATGAAGATGTGAGAGATTGTCAAAAGAAATTG
ACTCAGGTAGAAAGTGATCTGGAAACAAACAAGAATAAGTTGGAAGAGGC
CATCAAACAGTTAGAGGATAGAGAAAAGGCACTTACTGCGGCCGAAAGTG
AAGTAGCTGCTTTGAACAGGAAAGTCCAGATGATTGAAGAAGACCTTGAA
AGATCCGAAGAAAGGTCTCAAGCTGCTGCATCGAAATTGGCTGAGGCTTC
TCAAGCAGCTGATGAATCTCAACGTATGTGCAAAGTACTAGAAAACCGTA
GCCAGCAAGACGAGGAACGTATGGACCAATTGACTAACCAATTAAAGGAA
GCTCGTCTCTTAGCTGAAGATGCTGATGGAAAGTCTGATGAAGTTTCGAG
GAAACTTGCTTTTGTTGAAGATGAACTTGAAGTAGCAGAAGACCGTGTGA
AATCTGGAGACTCAAAAATCATGGAGTTGGAAGAAGAATTGAAAGTTGTC
GGAAATAGCTTGAAATCGTTGGAAGTTTCTGAAGAAAAGGCCAATCAACG
AGTGGAAGAGTACAAGCATCAAATCAAACAACTCACTGTAAAATTAAAGG
AGGCTGAAGCTCGTGCTGAATTTGCTGAGAAGACCGTTAAGAAACTGCAG
AAGGAAGTTGACAGACTTGAAGATGAACTCGGCCTCAACAAAGACAGATA
CAAGTCTTTGGCTGACGAGATGGATTCCACGTTTGCTGAATTGGCTGGAT
ATTAA back to top
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