Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107170494 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | uncharacterized LOC107170494, transcript variant X2 |
| Transcript id | XM_015520729.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107170494 |
| Genbank | XM_015520729.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107170494 | gene91 | Diuraphis noxia | gene | JOTR01000002 316164..319145 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015376215.1 | cds129 | Diuraphis noxia | CDS | JOTR01000002 318607..318942 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna131 ID=rna131|Name=XM_015520729.1|organism=Diuraphis noxia|type=mRNA|length=1164bp|location=Sequence derived from alignment at JOTR01000002:316164..319145+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TCGAACCGCGATCGCGTTATACTGTTGCGCTGTCCAGATAACGACGGCGG
CGTGCGGCGGTcgatcatcatcatcatcatcatatcatattattattaaa
cgtcgCTTCTGCGATAAACAggaaataacaattattataatatattataa
tcatcagaattactattattattattattattattattactacgtatata
ctattattaatacaaaattaaaccgCGTGATATCACCGTGTGTAGTGCAA
CATAAAATACTGTTCACGGCGGTTAGATGGCCGTCAGTCGCAGTGcttaa
tcgtattatatatgtgtgtggcGGTCATAAACGTGGAACACCGAACCGCC
ACAGTCGTTATTTACCGAAATCcaacactataaaatattataatgtacta
aaatattattattattatttttattgtcgtcgtcgtcgtcgtcaagttca
CGAATGTCAAAGACAACGAAAAAAACACAAGAAACTAGGAAAAATCTTGT
GGATCGAATAAAATCTGACGACGGTCATCGTTCTGAATAGCCACGCCACA
CAAAACTATTTAGTACGAAAATAACACTCGTTTATTTGAACACTACgctt
gaaaaaaatatcgaacTGCGTAGATATGGTCAACTGCGAAAACGGATATG
ATAACTCTGCGTGTTACCCAAATGACTATGTCGGTGTAACACAGATACCG
TCGATCGAAATGGACCGTGTGACCGATACCAGAATGAATGAAGTCGTCGT
GACCGGATGCTGCGGTAGTGGTCTGAACGGGAATAGCAATCATCAGTCAG
GCGATCAGTCTCCTGAAAAAGGCTCGCCGGACGTATGTCAGCCCAAATGC
CCAGCGGTCAGACCAACGCCCTGGGACCCAATAAAAACGCGGTTTGTGGC
CGTCTTAACCATAGCCATAATCGCGTGGGCACTGATTGGCGTTTTTGTCA
AAAACCTgtaaaatacgaaaaattattgaaatcctATAAATACtcaatca
ataatattgaattttaaacatgtccaactatattattttcacatttatcT
ATATCTTATAGTATCtatgatgatataatttatgtaatgtaaCATACGAT
TCTGTTCGATTAGTTATTAATGTATCTTGATGAATAAATATGGCCACGCT
GCTACTCTACTTGA back to topprotein sequence of XM_015520729.1 >rna131 ID=rna131|Name=XM_015520729.1|organism=Diuraphis noxia|type=polypeptide|length=112bp
MVNCENGYDNSACYPNDYVGVTQIPSIEMDRVTDTRMNEVVVTGCCGSGL
NGNSNHQSGDQSPEKGSPDVCQPKCPAVRPTPWDPIKTRFVAVLTIAIIA
WALIGVFVKNL. back to topmRNA from alignment at JOTR01000002:316164..319145+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna131 ID=rna131|Name=XM_015520729.1|organism=Diuraphis noxia|type=mRNA|length=2982bp|location=Sequence derived from alignment at JOTR01000002:316164..319145+ (Diuraphis noxia)
TCGAACCGCGATCGCGTTATACTGTTGCGCTGTCCAGATAACGACGGCGG
CGTGCGGCGGTcgatcatcatcatcatcatcatatcatattattattaaa
cgtcgCTTCTGCGATAAACAggaaataacaattattataatatattataa
tcatcagaattactattattattattattattattattactacgtatata
ctattattaatacaaaattaaaccgCGTGATATCACCGTGTGTAGTGCAA
CATAAAATACTGTTCACGGCGGTTAGATGGCCGTCAGTCGCAGTGcttaa
tcgtattatatatgtgtgtggcGGTCATAAACGTGGAACACCGAACCGCC
ACAGTCGTTATTTACCGAAATCcaacactataaaatattataatgtacta
aaatattattattattatttttattgtcgtcgtcgtcgtcgtcaagGTGT
GTATacaagtttcaaaaaaaatactctGCGATCCGATTATATATTGTTAC
GAACGAAcaatataatgaacaataacaataactataattattatttttgt
agttcaCGAATGTCAAAGACAACGAAAAAAACACAAGAAACTAGGAAAAA
TCTTGTGGATCGAATAAAATCTGACGACGGTCATCGTTCTGAATAGCCAC
GCCACACAAAACTATTTAGTACGAAAATAAGTAAGTGTTACTTAGAtact
tgataacatttaaaGACAATTTTCAGTACaagataatacttttttttcaa
taaaaacaMCACAAAAACCAAAACAATACCTACTCCAATTTTGTAggaca
cacacatatacaatattatacattgtatttaaaaattaaatttaaaataa
taattttttcctgtataatttatgcatatatagtattgcaatataatata
acgtacttatatacacattatagacatattatattatttgctcaATGGCT
GTTGCACCTTTCACATACttccaaacataatattattaaaaacaacaaat
ctCATACGAATgctgttattgttttaatattgttagtaGCATTTTGTTAT
AACTGCCTTGTGGGTATAGACGATTTCATACATGGGCTTGTGTAGACTCT
GCTCGCGTTTGCATATATTTAGAATAcacttttgttataatatatgcgcG
AGTACGATGCGCGTTTagtagtttttaatttcataagtaattcatatttt
attcataaaaaattcataCACCAATAGGTCGAGTGGAATCGCTGCTGCAA
CTGCACATGTCGCCGTCGATTTCTCTCATTTACCATTTCACCGAACGtaa
ctattatgatataatagacTTCCGGTCCTGCACGGTTATTGTTATTTCAG
CGCTGCGCAATATTATCGCATCTGTGTACATATTCGCGCgttcaaatatt
taaacgacATTGACAAAGTGCAGCGCAAAGTTTAACAACAATACGaagct
aaaataattaattaatcacgATCCGGTAAAATCAACATTGCGATGGCGTA
CACTATCCACTATGGCATTAAAGTCGCAGGCTTGCGTAGTGGCGTGTAGT
ACGATAGAAGTTTTCCTTTAAATTGTAGTGCTGTGGGCAGGACGAACACT
ACGTCTTGCACTAaatttatcgttattttaaaaatacataatatattatg
tacgagaAATCCAGACAAATAGATCTCACGCGTGAACTATTCGGGCGGAT
GGCTTTGGTccttagttacctatataatactatagattTATGTATACGTC
GATTTTATGctatattttaggttttttcGAATTTCCCATACTAGGAATCT
CGAAATGTTAGCAAAAAGTTTAAATCTACAGACATTTATCAAAACCATGt
tggttgttaaaaaaattgcatctattacaattttatttttaactttagat
atacgtaggtacaaatgtttaatatgataacaaatattaatcattattac
atagtattaaaataacgtcaaataaacacaaaatatttattactacacTA
TTTTTCAATCCAGAACTCGATGAATAAgtcacgtttaaaatattatatga
aaatttaataacgaataatattatatacaaaaagtaaaactacaaagtat
tttattgtacctactttaTCTGTATTATTAGATGCGTTTCCAAAATTTCC
ATTactctctatataatataatatagcataacgTACTAACTAACTAACAA
TTTAAAGTCTAAATAACATGTAGGAACAAGCCAATATACTGTATAAACCG
CGTCAATTGTTTGAAAAaccaatttcatattttatttattggcgAAGGCA
AATGTTTTAATCTGCACCGTAAATACTGTCACGATTCATCATTGAAcagt
ataattattcatttttcatttttttttttatttgctcaGCAGCACTCGTT
TATTTGAACACTACgcttgaaaaaaatatcgaacTGCGTAGATATGGTCA
ACTGCGAAAACGGATATGATAACTCTGCGTGTTACCCAAATGACTATGTC
GGTGTAACACAGATACCGTCGATCGAAATGGACCGTGTGACCGATACCAG
AATGAATGAAGTCGTCGTGACCGGATGCTGCGGTAGTGGTCTGAACGGGA
ATAGCAATCATCAGTCAGGCGATCAGTCTCCTGAAAAAGGCTCGCCGGAC
GTATGTCAGCCCAAATGCCCAGCGGTCAGACCAACGCCCTGGGACCCAAT
AAAAACGCGGTTTGTGGCCGTCTTAACCATAGCCATAATCGCGTGGGCAC
TGATTGGCGTTTTTGTCAAAAACCTgtaaaatacgaaaaattattgaaat
cctATAAATACtcaatcaataatattgaattttaaacatgtccaactata
ttattttcacatttatcTATATCTTATAGTATCtatgatgatataattta
tgtaatgtaaCATACGATTCTGTTCGATTAGTTATTAATGTATCTTGATG
AATAAATATGGCCACGCTGCTACTCTACTTGA back to topCoding sequence (CDS) from alignment at JOTR01000002:316164..319145+ >rna131 ID=rna131|Name=XM_015520729.1|organism=Diuraphis noxia|type=CDS|length=336bp|location=Sequence derived from alignment at JOTR01000002:316164..319145+ (Diuraphis noxia)
ATGGTCAACTGCGAAAACGGATATGATAACTCTGCGTGTTACCCAAATGA
CTATGTCGGTGTAACACAGATACCGTCGATCGAAATGGACCGTGTGACCG
ATACCAGAATGAATGAAGTCGTCGTGACCGGATGCTGCGGTAGTGGTCTG
AACGGGAATAGCAATCATCAGTCAGGCGATCAGTCTCCTGAAAAAGGCTC
GCCGGACGTATGTCAGCCCAAATGCCCAGCGGTCAGACCAACGCCCTGGG
ACCCAATAAAAACGCGGTTTGTGGCCGTCTTAACCATAGCCATAATCGCG
TGGGCACTGATTGGCGTTTTTGTCAAAAACCTgtaa back to top
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