Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107168803 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 62% coverage of the annotated genomic feature by RNAseq alignments |
| Product | uncharacterized LOC107168803 |
| Transcript id | XM_015518328.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107168803 |
| Genbank | XM_015518328.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107168803 | gene9392 | Diuraphis noxia | gene | JOTR01000612 78534..81026 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015373814.1 | cds13178 | Diuraphis noxia | CDS | JOTR01000612 80480..81026 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna13653 ID=rna13653|Name=XM_015518328.1|organism=Diuraphis noxia|type=mRNA|length=1043bp|location=Sequence derived from alignment at JOTR01000612:78534..81026- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGGAAGAATTTACAGACTGCCTCAGCGAAAAAGAAATCAACGTCGC
ATTGGTACGAAGTGAGTTAAATGATTTGAAACAACACATTAAATCAGAAG
AAGACTACATCGGAAATTTAARACACGAAGTTATTACGTTAGGGTATGCA
TTGGACGAAAAAAATAAAACCATACAAGAGATGTCAAAAGCCCAAAGTAA
ACAGCACACAGCAACGCCGCGGTYCTCTTCGTTGATATCCGATAATCAAT
TGCACATTATGAGTAAATTAGAAGAACAAATGGACCAACTACTAGACAGC
TGTTTTGCCTGGAATAAGACTATAGTCGGTTATGAGAAAGTGTTGTTCCA
CATGCAAAATTCCATCCAACAACAGTCCGACAAAGGAAACAACCGGATAT
CTATATACCAACACCTTAAAGATATCGAGTACAAACTAACGTTGACGGAA
AATTTAGCCAAAGAAAAGGAAGTTATTATATTCCAACTACAAAATGAGAT
GGAAGATATAAAAGAAAAATGCAATTTAAAAATCACACACATGGAAGACA
CAGAAGTTAATTTGAGAAATGAAATTTGCAATTTAAAGGAGAGTTTAAAA
CTGAAAAGTTCGCATTTAATGATAGCCGAAAAAATAGCAAGTTTACAGCT
AAAAGAATCTCTAACTACTATTGACCAGTTAACTAACACCTGTAACATTC
AATTATTGAAATTAAATGACATACAAAATAAAACTCCCCAAAGATGCTGC
AATACTCATGTATCTAAAACCAATAAYAGATTTCAGCAAATGGAGGCTTT
GGTTGACAACATGTTGAAACTTAGTTTGGAGAATAAATTAATGAAAAAAC
TTTGCAAAATTCGAGAGGAAAAAATTAATTCACTTGAAAACAGTCCTAAT
AGATGTACAAGGCCATCAATAAAGAGATCATTTTTATTAGAATCCAATAC
TAGTATAAAATTACACTAAGCCGTTGACCGAGATCATGTAATGTATATTA
TCAATTTTGTAGCTTATACTTTTTATTTTTCATTAAAGCTCTT back to topprotein sequence of XM_015518328.1 >rna13653 ID=rna13653|Name=XM_015518328.1|organism=Diuraphis noxia|type=polypeptide|length=323bp
MVEEFTDCLSEKEINVALVRSELNDLKQHIKSEEDYIGNLXHEVITLGYA
LDEKNKTIQEMSKAQSKQHTATPRXSSLISDNQLHIMSKLEEQMDQLLDS
CFAWNKTIVGYEKVLFHMQNSIQQQSDKGNNRISIYQHLKDIEYKLTLTE
NLAKEKEVIIFQLQNEMEDIKEKCNLKITHMEDTEVNLRNEICNLKESLK
LKSSHLMIAEKIASLQLKESLTTIDQLTNTCNIQLLKLNDIQNKTPQRCC
NTHVSKTNNRFQQMEALVDNMLKLSLENKLMKKLCKIREEKINSLENSPN
RCTRPSIKRSFLLESNTSIKLH. back to topmRNA from alignment at JOTR01000612:78534..81026- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna13653 ID=rna13653|Name=XM_015518328.1|organism=Diuraphis noxia|type=mRNA|length=2493bp|location=Sequence derived from alignment at JOTR01000612:78534..81026- (Diuraphis noxia)
ATGGTGGAAGAATTTACAGACTGCCTCAGCGAAAAAGAAATCAACGTCGC
ATTGGTACGAAGTGAGTTAAATGATTTGAAACAACACATTAAATCAGAAG
AAGACTACATCGGAAATTTAARACACGAAGTTATTACGTTAGGGTATGCA
TTGGACGAAAAAAATAAAACCATACAAGAGATGTCAAAAGCCCAAAGTAA
ACAGCACACAGCAACGCCGCGGTYCTCTTCGTTGATATCCGATAATCAAT
TGCACATTATGAGTAAATTAGAAGAACAAATGGACCAACTACTAGACAGC
TGTTTTGCCTGGAATAAGACTATAGTCGGTTATGAGAAAGTGTTGTTCCA
CATGCAAAATTCCATCCAACAACAGTCCGACAAAGGAAACAACCGGATAT
CTATATACCAACACCTTAAAGATATCGAGTACAAACTAACGTTGACGGAA
AATTTAGCCAAAGAAAAGGAAGTTATTATATTCCAACTACAAAATGAGAT
GGAAGATATAAAAGAAAAATGCAATTTAAAAATCACACACATGGAAGGTT
TGTCTAAAAATATAACACTGTAATTATGTTATAATATAATTACAATATAA
TATAATAATTATATTATAACATTAAATTACATTGTAAAAAATTAATATTA
ATATCAGTTTTTAATTTTCAGACACAGAAGTTAATTTGAGAAATGAAATT
TGCAATTTAAAGGAGAGTTTAAAACTGAAAAGTTCGCATTTAATGATAGC
CGAAAAAATAGCAAGTTTACAGCTAAAAGAATCTCTAACTACTATTGACC
AGTTAACTAACACCTGTAACATTCAAGTATGTGCATAGATAATCAGAAAT
AACTAAAAACTAATTATTGTAACATTATCACAACATTTTAGTAGTTTCTA
TATAGTGCTTGAATTAAAAATAAAATAGAAGAGGTTGCAAAAAGTTGTGT
GAACCTAAAGATTAATATTATTCATTGAGATTAATATTAATTAGAAAGAC
TACCTACACTAAAATGTTTTTTAAAAATGCATGCACTGGATAAGATATAT
GCTTAAAATAAGAAGGAAGTAAGAAACAGCTGTGTTGTTAAATATAAAGT
AGGTAGTAGAACTAGTAGAAGTCARTCTACTATCTATAATGTTATTACCC
CAGCATAGATKAAGTCGTTGCTATGAATCATGAAGTTAAATTTAAATTCA
AAAATAATTGATAACAGCATACCTACGAAAAATAATTCCAAGTGTAGACA
GACTGTCGACCTATATTTCTAAAAACATTTTATTGTATTCCCTTTCACCG
AAAATCAATTTTATATTACGGATAACCTTAAAGATTAAAGAGATTGATAT
TTTATTTTTCGACTTCAATTCATATCAACTTCCAAAATAAAAATAAAATT
TTGTGAGTATAAAAATTCTCTATAATTTTTACTAAGATATTTCAAAAACA
TAATAAACAGTACATTGACATCCTATTAATAACTAATAAAGATTMAAAAT
TATACCATGTACTAACCTATTAAAATTGACTGAATATTTAATTCGGATTT
TACTGCTTCAAAAGGTGACAGATAAAAAAAACACATTCATGAAAAATCTT
TAAATCTTATTAACATATTCACACAARTATATGATTTAAGGTAAAATCTA
CGCATTCATGACTGCAGAATCTAAAAATGTAGTTGTACCTTTTAGTATAC
TAAATTAGTTAGTCGAAGTATTAGAGTACTGTTACATTAATTAAAATAAT
ACAAGATCATTCCATCCAAATCATGGTTTCAGGTATTTAATAAAATTAAT
AGACAACCGTATTGCTAATTTGTGATTTTCAGAAATGCTCTGTTATATAA
TTAAGAAATTATCATGGTCCCTGGGGAAGGATATAATCTACATTTATGTA
TTTCAATACTAACAAAGATTTAAAATTAAAATTTTTATCATAATCAGTAC
ATAGTTAAATTCCCTTAAAAAAACGTTTAAGTACAGTGTATAATTTATAA
ATACTGTAACTAAATTATACATGTTTACATAGAAAATGTGTTAATAATTA
TCTGTTCATTTCAGTTATTGAAATTAAATGACATACAAAATAAAACTCCC
CAAAGATGCTGCAATACTCATGTATCTAAAACCAATAAYAGATTTCAGGT
GAGATTTTAAACAACTATTCTGAATARCTCAATATAATAACACAGCATTA
AAATATAAAACTAATTTAACATTTAATTTTGAACAGCAAATGGAGGCTTT
GGTTGACAACATGTTGAAACTTAGTTTGGAGAATAAATTAATGAAAAAAC
TTTGCAAAATTCGAGAGGAAAAAATTAATTCACTTGAAAACAGTCCTAAT
AGATGTACAAGGCCATCAATAAAGAGATCATTTTTATTAGAATCCAATAC
TAGTATAAAATTACACTAAGCCGTTGACCGAGATCATGTAATGTATATTA
TCAATTTTGTAGCTTATACTTTTTATTTTTCATTAAAGCTCTT back to topCoding sequence (CDS) from alignment at JOTR01000612:78534..81026- >rna13653 ID=rna13653|Name=XM_015518328.1|organism=Diuraphis noxia|type=CDS|length=969bp|location=Sequence derived from alignment at JOTR01000612:78534..81026- (Diuraphis noxia)
ATGGTGGAAGAATTTACAGACTGCCTCAGCGAAAAAGAAATCAACGTCGC
ATTGGTACGAAGTGAGTTAAATGATTTGAAACAACACATTAAATCAGAAG
AAGACTACATCGGAAATTTAARACACGAAGTTATTACGTTAGGGTATGCA
TTGGACGAAAAAAATAAAACCATACAAGAGATGTCAAAAGCCCAAAGTAA
ACAGCACACAGCAACGCCGCGGTYCTCTTCGTTGATATCCGATAATCAAT
TGCACATTATGAGTAAATTAGAAGAACAAATGGACCAACTACTAGACAGC
TGTTTTGCCTGGAATAAGACTATAGTCGGTTATGAGAAAGTGTTGTTCCA
CATGCAAAATTCCATCCAACAACAGTCCGACAAAGGAAACAACCGGATAT
CTATATACCAACACCTTAAAGATATCGAGTACAAACTAACGTTGACGGAA
AATTTAGCCAAAGAAAAGGAAGTTATTATATTCCAACTACAAAATGAGAT
GGAAGATATAAAAGAAAAATGCAATTTAAAAATCACACACATGGAAGACA
CAGAAGTTAATTTGAGAAATGAAATTTGCAATTTAAAGGAGAGTTTAAAA
CTGAAAAGTTCGCATTTAATGATAGCCGAAAAAATAGCAAGTTTACAGCT
AAAAGAATCTCTAACTACTATTGACCAGTTAACTAACACCTGTAACATTC
AATTATTGAAATTAAATGACATACAAAATAAAACTCCCCAAAGATGCTGC
AATACTCATGTATCTAAAACCAATAAYAGATTTCAGCAAATGGAGGCTTT
GGTTGACAACATGTTGAAACTTAGTTTGGAGAATAAATTAATGAAAAAAC
TTTGCAAAATTCGAGAGGAAAAAATTAATTCACTTGAAAACAGTCCTAAT
AGATGTACAAGGCCATCAATAAAGAGATCATTTTTATTAGAATCCAATAC
TAGTATAAAATTACACTAA back to top
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