Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107172575 |
| Model evidence | Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Partial | true |
| Product | geranylgeranyl pyrophosphate synthase |
| Start range | . |
| Start range | 625 |
| Transcript id | XM_015522866.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107172575 |
| Genbank | XM_015522866.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107172575 | gene12840 | Diuraphis noxia | gene | JOTR01003964 625..2949 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015378352.1 | cds17178 | Diuraphis noxia | CDS | JOTR01003964 625..779 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna17809 ID=rna17809|Name=XM_015522866.1|organism=Diuraphis noxia|type=mRNA|length=713bp|location=Sequence derived from alignment at JOTR01003964:625..2949+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
AAACTCTTGCAGCCTTTCACATATATTATGCAAGTGCCTGGCAAACAAAT
CAGAGCTAAACTTGCTCATGCATTTAATTATTGGTTGAAAATACCATCCG
ACAAATTGGCAGTTATTGGAGATATAGTACAGATGTTGCATAATTCTAGT
CTTTTaactgATGATATTCAAGATAATTCAGTCTTGAGACGTGGGATACC
TGTGGCACATTCAATCTATGGTGTTGCTAGTACAATCAATGCTGCAAACT
ATATGTCATTTGTTGCATTAGAACGAACTCTGAGCCTAGGACATCCAATG
gctACCACTGTATACACTGAACAGGTGTTAGAACTTCATCGAGGTCAAGG
AATGGAAATTTATTGGCGAGATAATTATACATGTCCAACTGaagaagaat
ataaaaaaatgacaatCAGAAAAACTGGTGGTTTATTCATGCTTGCTATC
AGACTCATGCAGTTATTCAGTGACAGTACTAATGACTTCACAAAACTTAC
TGGAATATTAGGATTATATTTCCAGATTCGAGATGATTATTGTAACTTGT
GTTTGCAAGAAGTAAGAAGTATTGCATGTTTAttgtaatgaattaattat
taattatcatgtttAAATTCTTTTCATGAAGATGCTGTATTTTGGTTTAT
ACTGTTATATACATCtgatgaatacaaaatatagtttgtatataccgtgt
gttcaattttaaa back to topprotein sequence of XM_015522866.1 >rna17809 ID=rna17809|Name=XM_015522866.1|organism=Diuraphis noxia|type=polypeptide|length=196bp
KLLQPFTYIMQVPGKQIRAKLAHAFNYWLKIPSDKLAVIGDIVQMLHNSS
LLTDDIQDNSVLRRGIPVAHSIYGVASTINAANYMSFVALERTLSLGHPM
ATTVYTEQVLELHRGQGMEIYWRDNYTCPTEEEYKKMTIRKTGGLFMLAI
RLMQLFSDSTNDFTKLTGILGLYFQIRDDYCNLCLQEVRSIACLL. back to topmRNA from alignment at JOTR01003964:625..2949+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna17809 ID=rna17809|Name=XM_015522866.1|organism=Diuraphis noxia|type=mRNA|length=2325bp|location=Sequence derived from alignment at JOTR01003964:625..2949+ (Diuraphis noxia)
AAACTCTTGCAGCCTTTCACATATATTATGCAAGTGCCTGGCAAACAAAT
CAGAGCTAAACTTGCTCATGCATTTAATTATTGGTTGAAAATACCATCCG
ACAAATTGGCAGTTATTGGAGATATAGTACAGATGTTGCATAATTCTAGT
CTTTTGTACGTATTCACTTATAGAGTAGAAAAAAGTTtaactgtaattaa
aaataatttgaatacattatacatgttgtgtaatatttgtgtttattagt
TATCTAAAAACCTAAGTGAAGGCTAATGTATGAATtgcatgtataatttt
aagttaaaatatgtattagtaattaaccattttaattatttcaatttaaa
aattatgaattgaataaattaatttttgtaacttGATGTAGTCCTGTGTT
TACATTGTGTTTGGTATGCACTCTGAGCGTGTTGACCACTCAACATTTTT
AGTAACAAAATTATTGCCATACTTAGGTACAATTCATGTTCCAAATCAAC
CGTTCTCCTCTATAAACAGCTAATGGCCATAGTTACCAGgttaaggataa
aaaaaaaaaaaaagttttaaaattgtatagtgtGATAGTTTAAccaatga
aaatgtaatttattacatttacaaaTGATACCTTCTATATTATGGTTGTG
TATCTGCATTagtataattaatcattaaaatagttatgaataaatatttt
ccataaatcggttaataaatgttttttattttacataagtcTCCGaagat
aattattacttattacagtattactTACTCATTAATGATTACTgtactta
catacattttaaagtaaatcaTGACTTACATaggtataaagaaatattta
gatatcgtaaaaatgttatataagttTCTTAATTAACTTGATATGTTGTA
ATTAGattcttatatacctatattatatatattgctcTAATATCATAAAT
CAATGTAACTAATTAATTGTCTTgatcaaaaagaaaatataattttattt
atagttgtataattatgtttattattttatcattatataataataaatat
caagatCAAATTTTCTGTAATACCatagaagtatataatattgtaaatat
ctaaatgtttaacatcttataatttattatcaatttgaaTTTACTCATTA
ctataaccattgattatataataataaatattataatattataataatga
aaaatatatatatatcataatcatGAATATTACAtaactgaaaaatttaa
aataaatatccaattagttttggtaattttttattcaattattatatgaa
tcattgagaaattattaaaaacctataCATCTTAGTTAATTTTGTTCAGT
ATTTAGtttgttttactttatttattaattgtcaaTGTTTCAAGTTGatg
aaatacaaatacttatacatttaacattattaaaaagttatgataattag
tttaatagttattaaacaaaattaatatttgcttatatttattattttag
aactgATGATATTCAAGATAATTCAGTCTTGAGACGTGGGATACCTGTGG
CACATTCAATCTATGGTGTTGCTAGTACAATCAATGCTGCAAACTATATG
TCATTTGTTGCATTAGAACGAACTCTGAGCCTAGGACATCCAATGGTGCa
tatttctttcattttttttttaaataaatacttttggaTTGCTGTTAAAG
GAGAAtaagttgtaaatatatttttaggctACCACTGTATACACTGAACA
GGTGTTAGAACTTCATCGAGGTCAAGGAATGGAAATTTATTGGCGAGATA
ATTATACATGTCCAACTGaagaagaatataaaaaaatgacaatCAGAAgt
aattaaactgtatattaatttatttatatgtgttagttttttagtattca
ttatttttaattaatacttaaaatcgacttgagatatttaaaaatataag
taatgtgtaaaatattcttacactatacctacatacttataaaaatgtat
tttttaaatatttttgcatatttcatttTCAAGAAACTGGTGGTTTATTC
ATGCTTGCTATCAGACTCATGCAGTTATTCAGTGACAGTACTAATGACTT
CACAAAACTTACTGGAATATTAGGATTATATTTCCAGATTCGAGATGATT
ATTGTAACTTGTGTTTGCAAGAAGTAAGAAGTATTGCATGTTTAttgtaa
tgaattaattattaattatcatgtttAAATTCTTTTCATGAAGATGCTGT
ATTTTGGTTTATACTGTTATATACATCtgatgaatacaaaatatagtttg
tatataccgtgtgttcaattttaaa back to topCoding sequence (CDS) from alignment at JOTR01003964:625..2949+ >rna17809 ID=rna17809|Name=XM_015522866.1|organism=Diuraphis noxia|type=CDS|length=588bp|location=Sequence derived from alignment at JOTR01003964:625..2949+ (Diuraphis noxia)
AAACTCTTGCAGCCTTTCACATATATTATGCAAGTGCCTGGCAAACAAAT
CAGAGCTAAACTTGCTCATGCATTTAATTATTGGTTGAAAATACCATCCG
ACAAATTGGCAGTTATTGGAGATATAGTACAGATGTTGCATAATTCTAGT
CTTTTaactgATGATATTCAAGATAATTCAGTCTTGAGACGTGGGATACC
TGTGGCACATTCAATCTATGGTGTTGCTAGTACAATCAATGCTGCAAACT
ATATGTCATTTGTTGCATTAGAACGAACTCTGAGCCTAGGACATCCAATG
gctACCACTGTATACACTGAACAGGTGTTAGAACTTCATCGAGGTCAAGG
AATGGAAATTTATTGGCGAGATAATTATACATGTCCAACTGaagaagaat
ataaaaaaatgacaatCAGAAAAACTGGTGGTTTATTCATGCTTGCTATC
AGACTCATGCAGTTATTCAGTGACAGTACTAATGACTTCACAAAACTTAC
TGGAATATTAGGATTATATTTCCAGATTCGAGATGATTATTGTAACTTGT
GTTTGCAAGAAGTAAGAAGTATTGCATGTTTAttgtaa back to top
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