Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107172972 |
| Model evidence | Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | UPF0389 protein CG9231 |
| Transcript id | XM_015523301.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107172972 |
| Genbank | XM_015523301.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107172972 | gene1335 | Diuraphis noxia | gene | JOTR01000030 316472..318716 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015378787.1 | cds1941 | Diuraphis noxia | CDS | JOTR01000030 318477..318612 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id18057 | id18057 | Diuraphis noxia | exon | JOTR01000030 316472..316852 - |
| id18056 | id18056 | Diuraphis noxia | exon | JOTR01000030 317335..317425 - |
| id18055 | id18055 | Diuraphis noxia | exon | JOTR01000030 318477..318716 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna1986 ID=rna1986|Name=XM_015523301.1|organism=Diuraphis noxia|type=mRNA|length=712bp|location=Sequence derived from alignment at JOTR01000030:316472..318716- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TTACGATTTATGGCGTTCGTGACTGCTAGAAAGTACACCACTATTCCTAT
TCCAGTTGATTATTAACTTTCGTGTCGACCTGTTCTATATATTATATTTG
CGCAATGAATATTATTCCAAGGTTTGGAAAAAATTTTAAAAATGGATTGT
TCAACATGACTAAAAAGTATACTACCCCAAGTGTCACTCCATCGAATCCC
CCGCCTACGAATCCAAGTGTAACGCCTTCATTCAATTCAAATATTAAACT
CCCACTTTCAAATACAAGAAAAATCATGTGTGTCTGGGCTAAACGATACC
CCTCACTAAAAGATGTTCCAGATCACGTCACACCTGAAGTATGGAACAAA
GTTCGTTCTGTTGTACGAATCAAAGTGGCTAACTACACAATGTTCTTTAT
AATCTTGGGTTGTATTGCAATGGTTGTTACTGGCAAGAGAGCGCGTGACC
GTGGTGAGACATTAATGCAAAGAAATTTGGATTGGCATCAAAAGTACTCG
GAAGGAAAAGAAGACATAAAGAATATTGGTGTTTTTGGAAAATAATTAGT
TTTAGAGATATCAATTATATGCATCCAAAATATTTGATTGTTAAAAATGT
TTTATTTCTATTAATAGCTATTATGTAAGTCATTTAAAAAAAATGTATAG
TTATTAGTTGATGCTTTTTTATGTGTTCACAAAGTTAATAAAATCATAAA
TATATTTTTTAA back to topprotein sequence of XM_015523301.1 >rna1986 ID=rna1986|Name=XM_015523301.1|organism=Diuraphis noxia|type=polypeptide|length=147bp
MNIIPRFGKNFKNGLFNMTKKYTTPSVTPSNPPPTNPSVTPSFNSNIKLP
LSNTRKIMCVWAKRYPSLKDVPDHVTPEVWNKVRSVVRIKVANYTMFFII
LGCIAMVVTGKRARDRGETLMQRNLDWHQKYSEGKEDIKNIGVFGK. back to topmRNA from alignment at JOTR01000030:316472..318716- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1986 ID=rna1986|Name=XM_015523301.1|organism=Diuraphis noxia|type=mRNA|length=2245bp|location=Sequence derived from alignment at JOTR01000030:316472..318716- (Diuraphis noxia)
TTACGATTTATGGCGTTCGTGACTGCTAGAAAGTACACCACTATTCCTAT
TCCAGTTGATTATTAACTTTCGTGTCGACCTGTTCTATATATTATATTTG
CGCAATGAATATTATTCCAAGGTTTGGAAAAAATTTTAAAAATGGATTGT
TCAACATGACTAAAAAGTATACTACCCCAAGTGTCACTCCATCGAATCCC
CCGCCTACGAATCCAAGTGTAACGCCTTCATTCAATTCAAGTAAATTTAC
TTTAAAATGTTTTATAAGGTCAATTAATGTTATATAGTATAATGTTTCAT
TGCTGGTGAATCATTTTCAAGCCTTTCATTGAATACATAATTTTATGGTG
GAATAATGTAAAAAATAAACATAGGGTCCTACTTCTTAAATGTCCTAAAA
TTAAGGGCATAAAATAAAATAAATATAAACGTGTAATCTATTTATAAAAA
ATATATTTAGATTGTTATCATTGGCACAAATTGCACCTTTCCAGAGTATT
ATCTCGAGGAATCTCTTAATATTAAAATATGAAGTATTTAATCACTACAA
AATATTCTATTTAATACTTTTTCCCTACAAAAACATTTTGTGTTTTTTGC
AGACTAAATCATGTACAATTTATTTATATTATTCGGTTAGCTATAATAAC
RATGCTAATAATAATTATGTAATACAATAGTATTACTGTATTAGCTGAAA
TTGAGTATTAAATTATTTATTCATGACATTAAATGTTATTTATTTTTAAG
CTATTTTATGCATTTGGTGATTAATTAGTTTATCTATTGATAAGAAAAAA
AATGCACCCATTATTTAAATAATAAATATTACATAAAATATATTAAGTGT
ATTATAATGATTATCCATCATATTGCTTCTAGTACAATTTAATGGTAGTC
ATTAGCCCTAATTACATTTAGGATCAACAATTTTTTTTTTTATCTGTGCT
ATTAAAATAAAAATAATGTAAATAATATAACTACTACAAAACTGTAAGTC
TGTTTCATATACCTAATTGTTATAAACACAAGTAGGTTATCAATTGTACA
AATAAAACTCAATTCCCAATGTCTTTAAGTTTAATAGTTAAAATTAGTTA
AAATTATTTGAACAAAAACAAAATGTGTTATGACGGTTTGATGGGAAAAT
TTTTATSTTAACATAGTCTAAGATATAATATTGAGATTTAACTATGAGTT
GACTGTATTACTGATTTATAGGCTATAATTTGCAAAAACAATTTATATCT
TTTAAATAAAGTATGTTTTATTTTATATATATTTTTTCTAGATATTAAAC
TCCCACTTTCAAATACAAGAAAAATCATGTGTGTCTGGGCTAAACGATAC
CCCTCACTAAAAGATGTTCCAGATCACGTCACGTATGGATTATTATTTGT
TATTAACTAATTTTATTGTTTATTATGTATTTGTTTTAACTATCATTCAC
ATGTATGTAGCTGCAAAAACCGCAAACACATAATACCCGTATAATGTTCC
TTTGTAGTTATTTCACTTGGGCTTTGAATACTTTTTTGTCTCCTTTTTAT
ATAGTCATAATAGTATTGGCTTTCTCATCTCAAATTTTAATGATGTAGCT
TAACTTAATAACATTAATTTGTAGTATAGTTCCTTTCTTTCTATTATTAA
CAAATTTAGCAGGATATAATTGCTTTCATAGCTCTATGATTTAAATTTAA
ATTTAAGTTTCACTTATTATTCAATTTCCTTTTATGCATTTATTAAACAA
CTTCCTCAGTGTCTACAAAAGCCATTATTTTTGACATACTCACAAAACCT
CTGTGAAATTGTCTGCTCTAAACTATAATATATAACTAATTGAATTATGT
TTTATTTTGTGTAGACCTGAAGTATGGAACAAAGTTCGTTCTGTTGTACG
AATCAAAGTGGCTAACTACACAATGTTCTTTATAATCTTGGGTTGTATTG
CAATGGTTGTTACTGGCAAGAGAGCGCGTGACCGTGGTGAGACATTAATG
CAAAGAAATTTGGATTGGCATCAAAAGTACTCGGAAGGAAAAGAAGACAT
AAAGAATATTGGTGTTTTTGGAAAATAATTAGTTTTAGAGATATCAATTA
TATGCATCCAAAATATTTGATTGTTAAAAATGTTTTATTTCTATTAATAG
CTATTATGTAAGTCATTTAAAAAAAATGTATAGTTATTAGTTGATGCTTT
TTTATGTGTTCACAAAGTTAATAAAATCATAAATATATTTTTTAA back to topCoding sequence (CDS) from alignment at JOTR01000030:316472..318716- >rna1986 ID=rna1986|Name=XM_015523301.1|organism=Diuraphis noxia|type=CDS|length=441bp|location=Sequence derived from alignment at JOTR01000030:316472..318716- (Diuraphis noxia)
ATGAATATTATTCCAAGGTTTGGAAAAAATTTTAAAAATGGATTGTTCAA
CATGACTAAAAAGTATACTACCCCAAGTGTCACTCCATCGAATCCCCCGC
CTACGAATCCAAGTGTAACGCCTTCATTCAATTCAAATATTAAACTCCCA
CTTTCAAATACAAGAAAAATCATGTGTGTCTGGGCTAAACGATACCCCTC
ACTAAAAGATGTTCCAGATCACGTCACACCTGAAGTATGGAACAAAGTTC
GTTCTGTTGTACGAATCAAAGTGGCTAACTACACAATGTTCTTTATAATC
TTGGGTTGTATTGCAATGGTTGTTACTGGCAAGAGAGCGCGTGACCGTGG
TGAGACATTAATGCAAAGAAATTTGGATTGGCATCAAAAGTACTCGGAAG
GAAAAGAAGACATAAAGAATATTGGTGTTTTTGGAAAATAA back to top
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