Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107172992 |
| Model evidence | Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | menin, transcript variant X2 |
| Transcript id | XM_015523335.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107172992 |
| Genbank | XM_015523335.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107172992 | gene1339 | Diuraphis noxia | gene | JOTR01000030 402466..405346 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015378821.1 | cds1948 | Diuraphis noxia | CDS | JOTR01000030 402525..402969 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna1992 ID=rna1992|Name=XM_015523335.1|organism=Diuraphis noxia|type=mRNA|length=1973bp|location=Sequence derived from alignment at JOTR01000030:402466..405346+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
CAGTGGTAGTTGCAAGTGCTGCGCGGGTGCACTTTTTGGGATAGGTACAG
GCGGTTATTATGTCCCTTAAAGTATTCAAGSAGCACGCCGAGTTGTTTCC
GATCCGCGACATACCTGCTGTGGTGGACGTGTTCCGCAAGGAGCTGGAAA
AAAAAGAACCAGACCTGTTGCTGCTGTCACTGGTGGCTGGCGCCATCGAG
AACACGATGACTTGCGTCCGACCGACCACCGAAGCGCCAGTCGTCGTGAC
CTCCGAAACAAACTTTGACTTTGATCAGGTACCACTAAGGCTGCCCGACG
TCGAGCTGCACATAGTGGAAGCTCTATACACGAAATTCTACTCACTAATA
AAGAGCAGTGTTGACCCGCTGCATTTTGATGACCGAGACGGACACGCTAG
CCGAGAACTTGTGAAAAAGGTGTCCGACGTTATATGGAACACGCTTACTA
GAAGTTACTACAAGGACAGAGCGCACTTACAAAGCATGTATAGCTATTTA
ACAGgtTCAAAATTGGACTGTTTTGGTGTTGCGTTTGCTGTAGTAGCTGC
TTGTCAAATTCTCGGTTACAATGATGTTCATTTGGCTTTGTCAGAAGACC
ACGCATGGGTTGTATTTGGTCCAGATGGTAGTGAAAATGCAGAAGTTACG
TGGCatgGAAAGGGAAATGAAGATAAACGTGGACAAAAAATCAAAGATTC
AGGATCTGGTCATAGGTCGTGGCTATATGTTAATGGCCACCCCGTAGTTT
GTAATAGGCATATGGAAGTATCAGCATTAGTTAGTTCTATTAACCCAAGT
ATTAATCAATCTAATGATGCTTTAGAAGTTGCCACTCTTCAAAAGACTCT
TTTGTGGCTTCTTTATGATAAAGGACATCTAGAAAAATTTCCCCTTGCTT
TAGGTAACTTAGGTGATTTGGAGGAGTTAAATGCAACACCTGGAAGACCT
CCTTGTACAGCTTTATTTGAAAAGGCTATTTCAGCTGCTCGAATATACTA
TAATGATATGTTTGTCTATCCATATACTTACCAAGGTGGATATTTCTACa
gacataatatgattaaagaCGCTTTTGCAAGTTGGGCTAATGCTAGTCAA
GTTATAAGCAAgtatagttttaGTAAAGATGATGAAGAATTATATAAAGA
AATGATGGATATTGCTTATGAGTTAATACCATACTCATTGAAAGAAATGA
CATGTGGCAAAAGTCGGTCAATATTGAATAACCCACAATGTTATGCatat
gtgttattaatttatgatggtCTTTGTCTTTGGGAAGAAGATGGAACAAC
CCCAGTATTACACATTAAATGggcaaaacattttattaattccaTATCTA
AGTTTGATGATAGTGTGAGAACAAGACTTATCATATTAGAACCAAAAGAT
TCTGAAAATGATAGTGGTCTAATTCTAGattatcatgataataacataaa
taataataatcgtctaGTGCCTAAAGATATTTTAAGTACTATACCTGGCA
CAGACGAAGAAACTAAATCAGAACTTCATCCTGGCATTGAAGCACTAACT
GCAGCTTGTAGTGAGCGAATATTGAATCGAGAGTTCTTATTACAAGGTGG
AGGAGAACCTTTTGTGGGTAGTTCTGTTGTATTACCTACTCCTACTACTG
CACCTCAAACACCTATTTTAGAAACAACATTAAAGGATGATGAACCTGAA
ACTAAAATTGTGTTGAAGAGTAAGAAGATGAGAAGCATGAAAGATTTACT
TATTGCAAAGAAATTGAATACACAAGCAATTAGTTTACAAATGAGTGCTC
AGTCTCAAGGTGGAAAACGTCATGCACCTAGAGATACTGCAGAACCACTA
TCAAGGCGGAGTAGAAGAAATAAcaactaattaaatgtatactaaaaatg
cattaaacaagTTTAAATTCATTACTATGACATAGTTGATACcagtattt
tatttagaatctCTTACTTAAGG back to topprotein sequence of XM_015523335.1 >rna1992 ID=rna1992|Name=XM_015523335.1|organism=Diuraphis noxia|type=polypeptide|length=607bp
MSLKVFKXHAELFPIRDIPAVVDVFRKELEKKEPDLLLLSLVAGAIENTM
TCVRPTTEAPVVVTSETNFDFDQVPLRLPDVELHIVEALYTKFYSLIKSS
VDPLHFDDRDGHASRELVKKVSDVIWNTLTRSYYKDRAHLQSMYSYLTGS
KLDCFGVAFAVVAACQILGYNDVHLALSEDHAWVVFGPDGSENAEVTWHG
KGNEDKRGQKIKDSGSGHRSWLYVNGHPVVCNRHMEVSALVSSINPSINQ
SNDALEVATLQKTLLWLLYDKGHLEKFPLALGNLGDLEELNATPGRPPCT
ALFEKAISAARIYYNDMFVYPYTYQGGYFYRHNMIKDAFASWANASQVIS
KYSFSKDDEELYKEMMDIAYELIPYSLKEMTCGKSRSILNNPQCYAYVLL
IYDGLCLWEEDGTTPVLHIKWAKHFINSISKFDDSVRTRLIILEPKDSEN
DSGLILDYHDNNINNNNRLVPKDILSTIPGTDEETKSELHPGIEALTAAC
SERILNREFLLQGGGEPFVGSSVVLPTPTTAPQTPILETTLKDDEPETKI
VLKSKKMRSMKDLLIAKKLNTQAISLQMSAQSQGGKRHAPRDTAEPLSRR
SRRNNN. back to topmRNA from alignment at JOTR01000030:402466..405346+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1992 ID=rna1992|Name=XM_015523335.1|organism=Diuraphis noxia|type=mRNA|length=2881bp|location=Sequence derived from alignment at JOTR01000030:402466..405346+ (Diuraphis noxia)
CAGTGGTAGTTGCAAGTGCTGCGCGGGTGCACTTTTTGGGATAGGTACAG
GCGGTTATTATGTCCCTTAAAGTATTCAAGSAGCACGCCGAGTTGTTTCC
GATCCGCGACATACCTGCTGTGGTGGACGTGTTCCGCAAGGAGCTGGAAA
AAAAAGAACCAGACCTGTTGCTGCTGTCACTGGTGGCTGGCGCCATCGAG
AACACGATGACTTGCGTCCGACCGACCACCGAAGCGCCAGTCGTCGTGAC
CTCCGAAACAAACTTTGACTTTGATCAGGTACCACTAAGGCTGCCCGACG
TCGAGCTGCACATAGTGGAAGCTCTATACACGAAATTCTACTCACTAATA
AAGAGCAGTGTTGACCCGCTGCATTTTGATGACCGAGACGGACACGCTAG
CCGAGAACTTGTGAAAAAGGTGTCCGACGTTATATGGAACACGCTTACTA
GAAGTTACTACAAGGACAGAGCGCACTTACAAAGCATGTATAGCTATTTA
ACAGGtgagtgaaaatattttaaaacattggcCATAGGACATAGGCACTA
TCCCCAATAAACatgttatcatataaaatattttcttttaggtTCAAAAT
TGGACTGTTTTGGTGTTGCGTTTGCTGTAGTAGCTGCTTGTCAAATTCTC
GGTTACAATGATGTTCATTTGGCTTTGTCAGAAGACCACGCATGGGTTGT
ATTTGGTCCAGATGGTAGTGAAAATGCAGAAGTTACGTGGCatggtaatt
ttttatactatttattttaattttttattcaacttcagtattttaagaaa
tattattccTTTATACTATGATGGTTTAGTGTGAACATTATtggtttaaa
tagtttttattagtaaaaaataattacaaaaaaactgtatgggtaaaatt
ttaaactcaaaattaaGCTTTGTAAtgcttttttattatcatattggtAT
GAACTtttgtatgttattaaaaagttagtcattatttttatgtttcacat
GAATACACGATAACTCCATGTATTGAGCTGTATGGAGTATAAGTAGtagt
gtgtatttatatactatgtaGATGACTTTCATTATTGAGCAAGATACGTT
GGTAGCtgttatatgttaatttatatgtCAGAAGTACCTCAAgtacttat
attttgaattttttaatacatagaaTAATTGATTTGACTGATTGTTTCAT
TTTAGGAAAGGGAAATGAAGATAAACGTGGACAAAAAATCAAAGATTCAG
GATCTGGTCATAGGTCGTGGCTATATGTTAATGGCCACCCCGTAGTTTGT
AATAGGCATATGGAAGTATCAGCATTAGTTAGTTCTATTAACCCAAGTAT
TAATCAATCTAATGATGCTTTAGAAGTTGCCACTCTTCAAAAGACTCTTT
TGTGGCTTCTTTATGATAAAGGACATCTAGAAAAATTTCCCCTTGCTTTA
GGTAATTTCCGGAgtaatttcaaactttttaattcattaatactGGATTT
AACATATAAATGACTGTTTTTCAGGTAACTTAGGTGATTTGGAGGAGTTA
AATGCAACACCTGGAAGACCTCCTTGTACAGCTTTATTTGAAAAGGCTAT
TTCAGCTGCTCGAATATACTATAATGATATGTTTGTCTATCCATATACTT
ACCAAGGTGGATATTTCTACagacataatatgattaaagaCGCTTTTGCA
AGTTGGGCTAATGCTAGTCAAGTTATAAGCAAGtaagataaattatagat
atactaTTACATAGGACTTCCTTAATAGTTGATTTTTTATKattacatta
taggtatagttttaGTAAAGATGATGAAGAATTATATAAAGAAATGATGG
ATATTGCTTATGAGTTAATACCATACTCATTGAAAGAAATGACATGTGGC
AAAAGTCGGTCAATATTGAATAACCCACAATGTTATGCatatgtgttatt
aatttatgatggtCTTTGTCTTTGGGAAGAAGATGGAACAACCCCAGTAT
TACACATTAAATGggcaaaacattttattaattccaTATCTAAGTTTGAT
GATAGTGTGAGAACAAGACTTATCATATTAGAACCAAAAGTATGGCATAT
TGTTtctaaattatctaaattataattattttctaacagAATTACACAAA
AGTATTACATTAAAGTTTTTCTGTACTTAAGTaggaatttttgtatttat
gtttaattttactttaatgttTTTAGGATTCTGAAAATGATAGTGGTCTA
ATTCTAGattatcatgataataacataaataataataatcgtctaGTGCC
TAAAGATATTTTAAGTACTATACCTGGCACAGACGAAGAAACTAAATCAG
AACTTCATCCTGGCATTGAAGCACTAACTGCAGCTTGTAGTGAGCGAATA
TTGAATCGAGAGTTCTTATTACAAGGTGGAGGAGAACCTTTTGTGGGTAG
TTCTGTTGTATTACCTACTCCTACTACTGCACCTCAAACACCTATTTTAG
AAACAACATTAAAGGATGATGAACCTGAAACTAAAATTGTGTTGAAGAGT
AAGAAGATGAGAAGCATGAAAGATTTACTTATTGCAAAGAAATTGAATAC
ACAAGCAATTAGTTTACAAATGAGTGCTCAGTCTCAAGGTGGAAAACGTC
ATGCACCTAGAGATACTGCAGAACCACTATCAAGGCGGAGTAGAAGAAAT
AAcaactaattaaatgtatactaaaaatgcattaaacgTAAGTGCaattt
tttctttctaaaataatttattttattttatactgaaagactattattat
gttacttatattttagaagTTTAAATTCATTACTATGACATAGTTGATAC
cagtattttatttagaatctCTTACTTAAGG back to topCoding sequence (CDS) from alignment at JOTR01000030:402466..405346+ >rna1992 ID=rna1992|Name=XM_015523335.1|organism=Diuraphis noxia|type=CDS|length=1821bp|location=Sequence derived from alignment at JOTR01000030:402466..405346+ (Diuraphis noxia)
ATGTCCCTTAAAGTATTCAAGSAGCACGCCGAGTTGTTTCCGATCCGCGA
CATACCTGCTGTGGTGGACGTGTTCCGCAAGGAGCTGGAAAAAAAAGAAC
CAGACCTGTTGCTGCTGTCACTGGTGGCTGGCGCCATCGAGAACACGATG
ACTTGCGTCCGACCGACCACCGAAGCGCCAGTCGTCGTGACCTCCGAAAC
AAACTTTGACTTTGATCAGGTACCACTAAGGCTGCCCGACGTCGAGCTGC
ACATAGTGGAAGCTCTATACACGAAATTCTACTCACTAATAAAGAGCAGT
GTTGACCCGCTGCATTTTGATGACCGAGACGGACACGCTAGCCGAGAACT
TGTGAAAAAGGTGTCCGACGTTATATGGAACACGCTTACTAGAAGTTACT
ACAAGGACAGAGCGCACTTACAAAGCATGTATAGCTATTTAACAGgtTCA
AAATTGGACTGTTTTGGTGTTGCGTTTGCTGTAGTAGCTGCTTGTCAAAT
TCTCGGTTACAATGATGTTCATTTGGCTTTGTCAGAAGACCACGCATGGG
TTGTATTTGGTCCAGATGGTAGTGAAAATGCAGAAGTTACGTGGCatgGA
AAGGGAAATGAAGATAAACGTGGACAAAAAATCAAAGATTCAGGATCTGG
TCATAGGTCGTGGCTATATGTTAATGGCCACCCCGTAGTTTGTAATAGGC
ATATGGAAGTATCAGCATTAGTTAGTTCTATTAACCCAAGTATTAATCAA
TCTAATGATGCTTTAGAAGTTGCCACTCTTCAAAAGACTCTTTTGTGGCT
TCTTTATGATAAAGGACATCTAGAAAAATTTCCCCTTGCTTTAGGTAACT
TAGGTGATTTGGAGGAGTTAAATGCAACACCTGGAAGACCTCCTTGTACA
GCTTTATTTGAAAAGGCTATTTCAGCTGCTCGAATATACTATAATGATAT
GTTTGTCTATCCATATACTTACCAAGGTGGATATTTCTACagacataata
tgattaaagaCGCTTTTGCAAGTTGGGCTAATGCTAGTCAAGTTATAAGC
AAgtatagttttaGTAAAGATGATGAAGAATTATATAAAGAAATGATGGA
TATTGCTTATGAGTTAATACCATACTCATTGAAAGAAATGACATGTGGCA
AAAGTCGGTCAATATTGAATAACCCACAATGTTATGCatatgtgttatta
atttatgatggtCTTTGTCTTTGGGAAGAAGATGGAACAACCCCAGTATT
ACACATTAAATGggcaaaacattttattaattccaTATCTAAGTTTGATG
ATAGTGTGAGAACAAGACTTATCATATTAGAACCAAAAGATTCTGAAAAT
GATAGTGGTCTAATTCTAGattatcatgataataacataaataataataa
tcgtctaGTGCCTAAAGATATTTTAAGTACTATACCTGGCACAGACGAAG
AAACTAAATCAGAACTTCATCCTGGCATTGAAGCACTAACTGCAGCTTGT
AGTGAGCGAATATTGAATCGAGAGTTCTTATTACAAGGTGGAGGAGAACC
TTTTGTGGGTAGTTCTGTTGTATTACCTACTCCTACTACTGCACCTCAAA
CACCTATTTTAGAAACAACATTAAAGGATGATGAACCTGAAACTAAAATT
GTGTTGAAGAGTAAGAAGATGAGAAGCATGAAAGATTTACTTATTGCAAA
GAAATTGAATACACAAGCAATTAGTTTACAAATGAGTGCTCAGTCTCAAG
GTGGAAAACGTCATGCACCTAGAGATACTGCAGAACCACTATCAAGGCGG
AGTAGAAGAAATAAcaactaa back to top
|