Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107174016 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | uncharacterized LOC107174016 |
| Transcript id | XM_015524814.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107174016 |
| Genbank | XM_015524814.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107174016 | gene2283 | Diuraphis noxia | gene | JOTR01000059 426209..430367 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id29778 | id29778 | Diuraphis noxia | exon | JOTR01000059 426209..426371 + |
| id29779 | id29779 | Diuraphis noxia | exon | JOTR01000059 429723..430367 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015380300.1 | cds3302 | Diuraphis noxia | CDS | JOTR01000059 426351..426371 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna3393 ID=rna3393|Name=XM_015524814.1|organism=Diuraphis noxia|type=mRNA|length=808bp|location=Sequence derived from alignment at JOTR01000059:426209..430367+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
GgcgattattataaaaaagacGACGTTCTTTGGCGGATAATAACAGTTCG
CAAACGGACGTATACGCAGTTAATTAAGACCAGCGGTTCAGCAATCATTC
ATTTCACACCACACAAGAATAGAGaaacattataacaatacgATGATGTT
CAACAAATTCGCCGTATTCGCCTTATTGGCCGTCACCGTGTTGGTCGTGC
CAGCCATTGGACACCCGACCGAAGACGCCACATCCGGGATCGAGGATACC
GCAACGGCGGTGAAACAAGGTATCCGCGGTTGGCTGAAGACCGTCCACTC
GAAAATCGCCAAACACGAAGAAAACTGTACTCACGGTGGTGGCGTTGTAC
ATTGGGTGAAGAACAAACTGGGGTTGACGAAAAAAACTACTACCGAGATA
CCGACGACGACCACCATCACCACGGAAACCGATTATACTGGTTACATCCC
GGTAACCTCGGTGGTGAACCAAGGAGAACCAGAAGAAACATACAACGGCG
GTGATGATGACGTCACGATATTGGACGACTCCGTGGCGTTGGTCCCCGAG
AGCGATAGCGGCAACGAGTCTGTCGATGTAGACCCAACATATTCATCGGT
GACCGATAATGCCGTCGACCCAGTAGATCCCGATATCGATGTCCGCATGC
GCTTGTAAACCAATTGGGGACTATTATTGTGATCGATAGTTTTTAGTCAT
CGTTTTGACTTCGAAAAACTTCGCTTGATAATTTAATCTGgtttgtaatt
attgttctCGTAtgcttttacatttttttacgaaCAAAAAGttccactat
ttttttta back to topprotein sequence of XM_015524814.1 >rna3393 ID=rna3393|Name=XM_015524814.1|organism=Diuraphis noxia|type=polypeptide|length=172bp
MMFNKFAVFALLAVTVLVVPAIGHPTEDATSGIEDTATAVKQGIRGWLKT
VHSKIAKHEENCTHGGGVVHWVKNKLGLTKKTTTEIPTTTTITTETDYTG
YIPVTSVVNQGEPEETYNGGDDDVTILDDSVALVPESDSGNESVDVDPTY
SSVTDNAVDPVDPDIDVRMRL. back to topmRNA from alignment at JOTR01000059:426209..430367+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3393 ID=rna3393|Name=XM_015524814.1|organism=Diuraphis noxia|type=mRNA|length=4159bp|location=Sequence derived from alignment at JOTR01000059:426209..430367+ (Diuraphis noxia)
GgcgattattataaaaaagacGACGTTCTTTGGCGGATAATAACAGTTCG
CAAACGGACGTATACGCAGTTAATTAAGACCAGCGGTTCAGCAATCATTC
ATTTCACACCACACAAGAATAGAGaaacattataacaatacgATGATGTT
CAACAAATTCGCCGtaagtttttgatatttaatttacgtTGTttgttaat
aacatataatactgCTATCGTAGAAActgaatttcaaaattataatataa
tattaatagagaaaaatattttaattaaagggCATTAATATGGTTTTGGA
AAAAAGTAATATTCATTGATTTTCATTGTTCGTTTATACGGTTGACATTA
CACGCAGTAATGGTAAATWATTATTGTACCATAAATGTTACATTAATTCG
ATGCATATTAAGTTTCACCGTTCGTTTCGGTATACCATTAATTAATTAGA
GAGAAACATATCATATAAGTACTtaagtttaacatattatgttttgggaa
cattttaataaatcataaatatatattaatattctaccAACAgacaattg
tataaaaattattgatattttcaacttttaattataaaatatgcaccttt
catatatttttgtcatgaagaaaaatgtcaaatttRAAttcctataatac
atattttattttatcatatagtaTAAGAAGTATGAGTTGAAACAATAGCC
TTCCTagcggtaaaaaaaaatctgaagagtaaaaataaagaaaaaaacat
tagctatttacactaaataaattatgtgattaagtatgaaaataaattta
aaaccaaagtaatctataaaatacttattaagatTGCAGATTACAAAAAT
ACTAGAAATGTTGAATATTTGTTCAAatcaaaagtatattatatatattc
taaaaatctaaaatattttattatattaaaattttcgtcaatattaatat
attactacctACTAGATGAATTATTAgaacgaaaatataaaacaaaaaac
acttCTTTTCGTTCgttgatatttaattgtaaCTATTAAAtgaaagttgt
atttttttattataaatgctcGTTTGTACTTCTAATGTTACTAAAtatgt
agtaataaataaatatgaatgtcAAAAGATAAGTTAGAGACGGGCACGGT
TTACTATTCTATGAGACCTTCTATACATTAGTATCAGACTTCTAAGGGAA
AACTTTGTATATGAATCTTgaactatgtattataaaatataatacttctc
TAAATATATTAGAACGACTTGTTATGGAATATAACTCCACAACAGGtggt
atacaaatttaattttaataagacaCTAGYtataataggtattatgaata
tattttcttttgaatCATTTTCATAGTTAATGTTGAGTTCATATTTTCGT
GTTCTGTGATGtgaaatgataaaattgtttaattataatacctttGATAA
ATTGTATGCAGCTATTTACTGAccaaaaaaatacttaagatatgaacata
tttaatatgatattccttttaatatattatgttacttaattttaaatttt
tactatatttttcgTTACAAATAAGAGTACAATTTTCCATTAATAGTACA
CTATTTCTTCARtagttaatattacataataaatgcactaaaataatatc
aaacttaTAATAGCAtgctttattaataatatatttttgacacattttta
atataatatataaaaaaatatatataatatattatgttaaatacaacTCC
AAAAGAAAGACTAATCAGTTTAATTACAAAAGTAGGTTAGCTTTACCCAG
TATGATATTGATTTTGCTACAAAAAAAGAGATCAACAAATTTAAACGAGC
TAagttatataatctatatcatTATCTAGTGTTAACtaagaaattataaa
caaaaatatattttatactagttattttaatttttataataatatgaaaa
caattataatgatatatcttACAATACTTAGaaatgtatttagttatttt
aaaaatcacaatgATAAGATAACAGAGATCACAaagtattacttattaat
aaagtGTTACTacatgcaaaaataataatatccaataacaaatgttaggt
acctactcggTGATTATAGTAGGTAGaaacaaactatttttattttttgt
aacccTAATTCAATTTTTACCAATTCtgttataattgtattgattcAATT
TATGATATCWacaaacaaaattatttatcttttactaataatattatagt
ttctaaATTATGAAGTTTCATCatcaaataagaaataaaataatttgata
tgaaTGATTtgtatcgtaataattatttgttcaaaCTAGCTATTTACGAT
ATCAACAAAATTGAATCAAAGCTAAGAAAAAGTCATGATAAAAATTCCAA
TATACTGGTGTGGTTAATTTACACCCTagagaaattaaaatacacaatta
atGTGGGGCTTCGCTTCAATGAACCAACAAATTATCACCAAACAAAATGA
ATGATAGGCAGACTTTTACAAATTGCTTTACTATAGTCTTCATTTTTAAT
TGACTAAACGCCATAAATTCATAAGCGAAAATTCTGATTAATtagataat
cataatatcagttatcatagttttattatatttgcagtTTAAAcacatac
catattattaaggtattaattaatgattgcATTAAttagtattcaaaatt
aaaacgtaatacCGGTATgtaagtatgatattattcagTTTAATAATCTT
ACAAAAACGAATTCCCACGCGAGTTAAAATTATGAAGGCGAATAATRTCT
gccttgaaatttaaatataaaatgctcGATTTACTGCGAGTCAAAATTGT
TTGTKTTATTTTAAATACTGGAGTTTCGACAGGTTTtaaaacatagtata
atattatattattataacattataaccttGAATGTGTAAACGATCAGAAA
TTTTCTTGACCGTCATCGTACACTCTTCATAATTTGATTCCAACTGAAAA
CGTACACTGCACGGTRTTAATAATGGTATTACCCATCATATTGCTTCAAC
CTTCAatcatatatctaatataatatatctaatatatctaatataatata
atatcatgtgtgTACACAGTGTGCGTTGTTCACTTAATCAGTGGCGTGTT
TGAAGAAGATGTGTAAGCACTAACCCACCTATTTTACCAACMYGGGAAAG
TTTGCCATcggtgtatttattattaattattatgttaaatatgttaTCTC
TTACACTAATCAATATTAACCAAAAATtaccgaataaaataaaaaaaatg
caattaaataatatattacttccacaaaaatatgaattcaagGAATCGAT
ATCGAATCTGGTGTTTGGGGAAGGGGGAGTGCTCTCGGAGTAACAAACCT
CAACCCTTCCACCTTTTAGCTGAGTTTCAACCACGGTTATCTACTGTTGA
TAGCCGTGGTTTCAACTAATGATATCCAAGACGTGTATATTAACGAATTT
CCGGTTTTGCATAGGTATTCGCCTTATTGGCCGTCACCGTGTTGGTCGTG
CCAGCCATTGGACACCCGACCGAAGACGCCACATCCGGGATCGAGGATAC
CGCAACGGCGGTGAAACAAGGTATCCGCGGTTGGCTGAAGACCGTCCACT
CGAAAATCGCCAAACACGAAGAAAACTGTACTCACGGTGGTGGCGTTGTA
CATTGGGTGAAGAACAAACTGGGGTTGACGAAAAAAACTACTACCGAGAT
ACCGACGACGACCACCATCACCACGGAAACCGATTATACTGGTTACATCC
CGGTAACCTCGGTGGTGAACCAAGGAGAACCAGAAGAAACATACAACGGC
GGTGATGATGACGTCACGATATTGGACGACTCCGTGGCGTTGGTCCCCGA
GAGCGATAGCGGCAACGAGTCTGTCGATGTAGACCCAACATATTCATCGG
TGACCGATAATGCCGTCGACCCAGTAGATCCCGATATCGATGTCCGCATG
CGCTTGTAAACCAATTGGGGACTATTATTGTGATCGATAGTTTTTAGTCA
TCGTTTTGACTTCGAAAAACTTCGCTTGATAATTTAATCTGgtttgtaat
tattgttctCGTAtgcttttacatttttttacgaaCAAAAAGttccacta
tttttttta back to topCoding sequence (CDS) from alignment at JOTR01000059:426209..430367+ >rna3393 ID=rna3393|Name=XM_015524814.1|organism=Diuraphis noxia|type=CDS|length=516bp|location=Sequence derived from alignment at JOTR01000059:426209..430367+ (Diuraphis noxia)
ATGATGTTCAACAAATTCGCCGTATTCGCCTTATTGGCCGTCACCGTGTT
GGTCGTGCCAGCCATTGGACACCCGACCGAAGACGCCACATCCGGGATCG
AGGATACCGCAACGGCGGTGAAACAAGGTATCCGCGGTTGGCTGAAGACC
GTCCACTCGAAAATCGCCAAACACGAAGAAAACTGTACTCACGGTGGTGG
CGTTGTACATTGGGTGAAGAACAAACTGGGGTTGACGAAAAAAACTACTA
CCGAGATACCGACGACGACCACCATCACCACGGAAACCGATTATACTGGT
TACATCCCGGTAACCTCGGTGGTGAACCAAGGAGAACCAGAAGAAACATA
CAACGGCGGTGATGATGACGTCACGATATTGGACGACTCCGTGGCGTTGG
TCCCCGAGAGCGATAGCGGCAACGAGTCTGTCGATGTAGACCCAACATAT
TCATCGGTGACCGATAATGCCGTCGACCCAGTAGATCCCGATATCGATGT
CCGCATGCGCTTGTAA back to top
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