rna394 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015508096.1
Unique Namerna394
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000004contigJOTR01000004:1059230..1060258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161613
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productras-related GTP-binding protein C
Transcript idXM_015508096.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161613
GenbankXM_015508096.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161613gene264Diuraphis noxiageneJOTR01000004 1059230..1060258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015508096.1rna394Diuraphis noxiapolypeptideJOTR01000004 1059290..1060214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363582.1cds388Diuraphis noxiaCDSJOTR01000004 1060160..1060214 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id3427id3427Diuraphis noxiaexonJOTR01000004 1059230..1059402 -
id3426id3426Diuraphis noxiaexonJOTR01000004 1059476..1059633 -
id3425id3425Diuraphis noxiaexonJOTR01000004 1059695..1059837 -
id3424id3424Diuraphis noxiaexonJOTR01000004 1059910..1060049 -
id3423id3423Diuraphis noxiaexonJOTR01000004 1060160..1060258 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna394 ID=rna394|Name=XM_015508096.1|organism=Diuraphis noxia|type=mRNA|length=713bp|location=Sequence derived from alignment at JOTR01000004:1059230..1060258- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
AAGTTTTTATTCATAAAGTAGATGGACTCACAGAAGATACTAAAATGGAA
ACTCAACGAGAAATTCACCAAAGAGCTAATGATGATCTTGTAGATTCAGG
AGATGAACAAAAAATATATATTAGTTTCCATTTGACATCAATTTACGATC
ATAGCATATTTGAAGCATTTAGTAGAGTTGTGCAAAAGATGATTCCTCAA
TATGCAACTCTTGAAAATTTCCTAAACATTATTATATCGACATCTGGAAT
TGAAAAAGCCTTTTTATATGATGTAAAAACTAAAATATATGTAGCAACTG
ATTCATCACCGGTTGATATTCAAAGTTATGAACTTTGTTGTGATATGATA
GATGTTGTTATAGATTTATCAAATATTTATGGGTTGGGCGATAACCCAGG
ATTAATGAATGATCCAGCTTTTGATGATCAAAGTTCAAGTCTAATTAAAT
TAAATAATGGTACCATTTTATATTTGAGAGAGGTATGCAGTTTTTTGGCA
CTTGTATGTATACTAAGAGAAGATAACTTTGAAAAACAAAGAATTATAGA
TTATAATTTTGTGATTTTACGAAAAGGTATACATAAACTTTTTGAACTAA
AAGTTAAAGAAAAAGAAAGTATTGAACCAAGAAAGCCACCATCATTTAAG
TAGTTAACAATTATTTAATTCTTGTTTGTTAGAATATTATACCTATTACT
AGTTTTACTTTAT
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protein sequence of XM_015508096.1

>rna394 ID=rna394|Name=XM_015508096.1|organism=Diuraphis noxia|type=polypeptide|length=203bp
METQREIHQRANDDLVDSGDEQKIYISFHLTSIYDHSIFEAFSRVVQKMI
PQYATLENFLNIIISTSGIEKAFLYDVKTKIYVATDSSPVDIQSYELCCD
MIDVVIDLSNIYGLGDNPGLMNDPAFDDQSSSLIKLNNGTILYLREVCSF
LALVCILREDNFEKQRIIDYNFVILRKGIHKLFELKVKEKESIEPRKPPS
FK.
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mRNA from alignment at JOTR01000004:1059230..1060258-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna394 ID=rna394|Name=XM_015508096.1|organism=Diuraphis noxia|type=mRNA|length=1029bp|location=Sequence derived from alignment at JOTR01000004:1059230..1060258- (Diuraphis noxia)
AAGTTTTTATTCATAAAGTAGATGGACTCACAGAAGATACTAAAATGGAA
ACTCAACGAGAAATTCACCAAAGAGCTAATGATGATCTTGTAGATTCAGG
TAGTTTTTAGAATGTTAGCTATGATTTAATTGTGAGAGTTAGTGGCCACA
TTAATGATATGTTTTATTAATTAAGTACATTCAATTAAATACTAATTTAT
GTTCTTTAGGAGATGAACAAAAAATATATATTAGTTTCCATTTGACATCA
ATTTACGATCATAGCATATTTGAAGCATTTAGTAGAGTTGTGCAAAAGAT
GATTCCTCAATATGCAACTCTTGAAAATTTCCTAAACATTATTATATCGG
TAATGATAATATTTTTTTTTATTAATATTGATATTTTTGTTTTAAATTCT
TTTTAAATAATTTAATTTCAGACATCTGGAATTGAAAAAGCCTTTTTATA
TGATGTAAAAACTAAAATATATGTAGCAACTGATTCATCACCGGTTGATA
TTCAAAGTTATGAACTTTGTTGTGATATGATAGATGTTGTTATAGATTTA
TCAAATATTTATGGGTTAGTTATTTGATAGTTTTATTAATGAACGGTGTT
CAGTTTAACGTTTAAATGTTTTTAGGTTGGGCGATAACCCAGGATTAATG
AATGATCCAGCTTTTGATGATCAAAGTTCAAGTCTAATTAAATTAAATAA
TGGTACCATTTTATATTTGAGAGAGGTATGCAGTTTTTTGGCACTTGTAT
GTATACTAAGAGAAGATAACTTTGAAAAACAAAGTGAGTTACAAAATGTC
ATACATTTTATTCTACAAAGGGCGAAAAATATATATTAATTTGTTTTTAT
TCTTAGGAATTATAGATTATAATTTTGTGATTTTACGAAAAGGTATACAT
AAACTTTTTGAACTAAAAGTTAAAGAAAAAGAAAGTATTGAACCAAGAAA
GCCACCATCATTTAAGTAGTTAACAATTATTTAATTCTTGTTTGTTAGAA
TATTATACCTATTACTAGTTTTACTTTAT
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Coding sequence (CDS) from alignment at JOTR01000004:1059230..1060258-

>rna394 ID=rna394|Name=XM_015508096.1|organism=Diuraphis noxia|type=CDS|length=609bp|location=Sequence derived from alignment at JOTR01000004:1059230..1060258- (Diuraphis noxia)
ATGGAAACTCAACGAGAAATTCACCAAAGAGCTAATGATGATCTTGTAGA
TTCAGGAGATGAACAAAAAATATATATTAGTTTCCATTTGACATCAATTT
ACGATCATAGCATATTTGAAGCATTTAGTAGAGTTGTGCAAAAGATGATT
CCTCAATATGCAACTCTTGAAAATTTCCTAAACATTATTATATCGACATC
TGGAATTGAAAAAGCCTTTTTATATGATGTAAAAACTAAAATATATGTAG
CAACTGATTCATCACCGGTTGATATTCAAAGTTATGAACTTTGTTGTGAT
ATGATAGATGTTGTTATAGATTTATCAAATATTTATGGGTTGGGCGATAA
CCCAGGATTAATGAATGATCCAGCTTTTGATGATCAAAGTTCAAGTCTAA
TTAAATTAAATAATGGTACCATTTTATATTTGAGAGAGGTATGCAGTTTT
TTGGCACTTGTATGTATACTAAGAGAAGATAACTTTGAAAAACAAAGAAT
TATAGATTATAATTTTGTGATTTTACGAAAAGGTATACATAAACTTTTTG
AACTAAAAGTTAAAGAAAAAGAAAGTATTGAACCAAGAAAGCCACCATCA
TTTAAGTAG
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