Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107162033 |
| Model evidence | Supporting evidence includes similarity to: 1 EST, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | troponin C, isoform 2 |
| Transcript id | XM_015508724.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107162033 |
| Genbank | XM_015508724.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107162033 | gene326 | Diuraphis noxia | gene | JOTR01000004 1786066..1792919 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015364210.1 | cds475 | Diuraphis noxia | CDS | JOTR01000004 1792797..1792799 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna481 ID=rna481|Name=XM_015508724.1|organism=Diuraphis noxia|type=mRNA|length=917bp|location=Sequence derived from alignment at JOTR01000004:1786066..1792919- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
AGGCTTSCGATTCAGTATAATAATCTGACTTCTCCAGTTCACAACTRGCG
AACGTACGGCACATTTTTTCCCTCAAAACGTTCCCGTTGTTTGTTTAAGT
CGATTTCCCTTGTTTGAAAAATGGAAGATTTACCGCCAGAACAAATCTCA
GTCCTCAGGAAAGCTTTCGATGCATTTGATCGCGAACGTTCCGGAAGTAT
ACCCACAGACATGGTGGCTGATATCTTACGACTTATGGGACAGCCTTTCA
ACAAGAAGATTCTTGATGAACTTATCGAAGAAGTTGATGCAGACAAATCT
GGACGTTTGGAGTTTGACGAATTCGTAACATTGGCCGCTAAGTTCATTGT
TGAAGAAGACGATGAAGCTATGCAAAAAGAACTTCGTGAAGCTTTTAGGC
TGTACGATAAAGAAGGAAATGGTTATATTCCTACATCTTGCCTGAAGGAA
ATTTTGAGAGAGCTCGACGATCAGCTAACCAACGAAGAATTGGACATGAT
GATTGACGAAATTGATTCCGATGGTTCTGGAACAGTAGATTTTGATGAAT
TCATGGAAATGATGACTGGAGAATAAAGAAATTTGATGGTGTATCATATT
GAAGTTATTCGAGAAATGGGTTTGTCCATCAACACCCTTCAGAATATGTT
ATTTATTTTGTACAAAAACAGAAATTTTTTTATATAAACCACACAAACTT
CTATCACACTTAACATACTTAAAAAATTATATTTATAAAATACGAAAGAT
AATAAAATATTAAGTTTTAACTAATCATGGCACATGATATGAATTTTCGA
TTAGTGAAACTGGAGAAAATTTCTTCAGATAGACATCGCTTGTTGTAAAA
ATTGGATGAAACGTATACCATTATTATAAATAAACTGTGACTAATTTATT
GTTGTAAAAAATAAGAA back to topprotein sequence of XM_015508724.1 >rna481 ID=rna481|Name=XM_015508724.1|organism=Diuraphis noxia|type=polypeptide|length=152bp
MEDLPPEQISVLRKAFDAFDRERSGSIPTDMVADILRLMGQPFNKKILDE
LIEEVDADKSGRLEFDEFVTLAAKFIVEEDDEAMQKELREAFRLYDKEGN
GYIPTSCLKEILRELDDQLTNEELDMMIDEIDSDGSGTVDFDEFMEMMTG
E. back to topmRNA from alignment at JOTR01000004:1786066..1792919- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna481 ID=rna481|Name=XM_015508724.1|organism=Diuraphis noxia|type=mRNA|length=6854bp|location=Sequence derived from alignment at JOTR01000004:1786066..1792919- (Diuraphis noxia)
AGGCTTSCGATTCAGTATAATAATCTGACTTCTCCAGTTCACAACTRGCG
AACGTACGGCACATTTTTTCCCTCAAAACGTTCCCGTTGTTTGTTTAAGT
CGATTTCCCTTGTTTGAAAAATGGTAAGTAGAATTTATAGGTATAACTGC
TTGTGTTGTTTTATATCGTTTACCTTCGATACGTCAATGAATGAAAAATT
TGGCAATTCACCATACTTTATTAAATAGGTAGTTGTAGTTTGTTTAATAA
TTATTAACTCGTGTCAAAAAAAAAGAAAGACACATGCATATATATTATAT
ATATATATACTGTATTGTCGTTTCTACCTGCTGGATGAGTTTTGTCATCT
GCCAAGATATAAAGTAAAGATAAATTGGCACATTGGCAGACAATTATTGT
TTTGCCAATCGTTAGAAATTCGATTCAAAATTACAATTGTATGTGTTCAG
TTGCCAAATAGATATGTTCATTCAGTTTCTTTACAACTATTTACACCTAT
ATTATATGCACGCGTATAAAATCTTCTTGGCTGAAATCTATAATTTGTTT
TTTGTTATTTTTTTTTTGTAGGAAGATTTACCGCCAGAACAAATCTCAGG
TAACTACGCGTTATTTGTGAACGTCGTGTACCGTGTTCGTTTTTTCTCCT
GTCCACGACTAATTTTTGAAATCAAAAAAATTAATACATAATGTTATTTA
TAAGCAGTATTTACTATTTTCATATCAAAACCATAATATATAAATTATTC
GTCATAAATAAATTGTTTATTAAATAGAATAGGTTTAGATTAAAATACAT
ATTTATAATATTTATATACCTAATTGTAATTTATAATTATTTATATGCAT
TCACTTCTCACTTCTTTATTTATTACATTGTTTCCTTCGTCTTTACAAAT
GTTATTAATAAACAAAAATACTTAAATAAGAAGTATCTATTACTTATACT
AACGTAAAGGTATATTTTTACCTTATAATACTTTTAACTTTTAAGTACCA
TTAGTACTGAACCAAATAATAAATAAGCATACTATTACAGGCTTAAAATT
TAGTATAACATAAGTAATAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTATTATTCCCAGGTTTTGACGGTGGTTATCGCTTAGCCAGTATACA
ACTGTGGTGTAAACAGTTTCAAAAAACCACATATTTTTTTACCATATTGT
TAATATGCCTCATATTATTTGTGTTTTTTCACTAATCCAAACATTATTTA
TTTACACTAATTTTTAATACCTACTCAAACGAGTTTCTGGCATTCCTGCT
TGTTTCGTTACCATTAAAAATTTTAAATTACCTCTATAGTTATTTTGTTA
CTTCGACATTTCAAACAAACTGCATAATGTACACCGATAACTTATGTTTG
CAGCTTAAACATCGCTTAATTATCTCCTGCTTTTGTAATTTAAATATTAC
ATTTTGAAAATGCTTATTGCCTTTTTAGTAATCGAATAACAAAAACACAA
ATAAGCTATTCTCAAAAATATAAAAATATAAAATTGCAAAATTATTTTTA
ATTTCATAAACATGCCAACTTACAATTTTATTCCATGAATCATAATGAAT
AGTTTTTGATTTGTCAATAATTCCATATTATTAAATAAATATAATAAACA
TCAACATTTAACGTGRAATTAGTAGTTTATTTGCTTTAAGTTAAAACACA
TAGATTGAATTAATTAGATTAATCAAAGATTAGTAGTTAGTTCACAATTT
TTTTTTTAAACTCATTCATTTTAGAACAATAGTGTATGTCTAAATAGTTT
AAAATGGATAAAATAATGAATTATTAGATTTACTTATATTGTCATGTATT
AAAATTAACTTATAGATTGACTTAAAGTAGTTTACGAAATATGTTGCGGT
ATCACTAAGAATAATTTTTATTGTTTGACAAGTCAATTTATATTCCAAAT
KTTTGTAGTTTTGTATACGGAAAATTAAAATTAAAGTAAAACAGCGTATT
TAGTTGAATGTATTATGTATGATATTGAAGTAATTATATAAAATATTAAT
TTTATATCTTTATTATATATTATAATATATGTAATCACACACATTTTTCA
TAGTATATAAAATATAAAAGTTCACAGTAGAAACCGTTTATAACGTACCT
GGAAAAAATCTTTATTTCTGCGATGGTTATTTAGTACTTGATGGATCAGT
ATTCAGTCGTATACAATTATTTTTTCATTCATATCATTAAAGTAAGAATA
TTCCTTCGCACTTTAAGAACTTACTCATCAATATTAACTAAGCAAAGTAT
TTTAAAACATTWAGTAAACAAAAATAGATAATTAATAATTATTGATCCAC
AGCGATCTAGATTCACTGTTTATTCAATATCTAGATAACAACAATAAAAA
AATATAGTAGATTTTATAATATAATCTTGAATTTACATTATTGTTTTAAT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATT
TATATGATAAAATACATTTATTACTTAGACATAATTTATATATATATTTA
TTATATATAAATATATATTGTATTGATATGCTTTAATTTTTTAATAAAAA
TGTGTTAAACAATAAAAAAAAATACATGATTAATGATTATTAACCCTAAA
TATGTCAAATTGTCTACTTATACCTAAAATTCGGTTTTAATATTTAATTT
GTCAATGACTTTGTTTTGTCAAAAATTGTTACGTTTTGTTTTGTAATCAA
AACACTAAGTCATATAAAGTTCTTCAAATGAGAAAATATGTAATTGTCCT
TATCGTTTTTTAATTGTATTGGATCATGTTGTGTTAATATTTTGATTAAA
ATTTGAGATATTTTAATAACAAAATATATTTTGCAATACAGAATTATGAA
TTTATGCTAATATAATACGAAAATTGCCTTCCTTGAATATACGAGTATAA
AATATAATAATATATATAATATATAATACCTAACTGATTATGTTCATGTC
CTAAATATTGATATAAATCACTTTGGTCCGTATAGTTTATTATACCTTTT
GAATACCTACTTGAAAAATTTAAATAACTGTTGAAATTTATGTTGAATTT
ATCAAAACAACATTCATATTTCGAATGAAGATAAACCTACAATAACTATA
TAGATTATGCTTAAAATAAACATATTACGGTATATTTTTGTTTTRATGAA
TTAAAATTTAAAAATGGTCACAKTGAATATTAAAAATATTTGAATTTCTA
GAATTATTAAGTTATCAAAATAAAAATTTTGAAACTTTAAAATCATAATT
TTCACATAAATTACGCGTAATTAATTATTATTTCTTAAAAATTTAATATA
TGTATCTATGAATACAATTAATAGTTACCTATATTATTTATATAGTCGTT
GTTAAATGGAATTTTGCTCGTAGGCTATGGTTTTTATGCGTAATAAATAA
ATTTGTAAAATACTATGAAATACAAATAATCCGTTTTTACTATAATATAT
AATATTATATATGTATCTAGGTATATGGAGGTAAGAGAGCTGTGAAAATT
ATACTTTGAAAGTTGCCATTATTATTAAAAAATTTTAAAAAAAATATTTT
TAATTAGTGATTAATATTCAGTCCTCAGGAAAGCTTTCGATGCATTTGAT
CGCGAACGTTCCGGAAGTATACCCACAGACATGGTGGCTGATATCTTACG
ACTTATGGGACAGCCTTTCAACAAGAAGATTCTTGATGAACTTATCGAAG
AAGTTGATGCAGACAGTAATTTTTATTTCTTTTTAATAATTTGGTTTTAA
ATACAACTCGTACATAAATTAAAATTAAAGAATCTGGACGTTTGGAGTTT
GACGAATTCGTAACATTGGCCGCTAAGTTCATTGTTGAAGAAGACGATGA
AGCTATGCAAAAAGAACTTCGTGAAGCTTTTAGGCTGTACGATAAAGAAG
GAAATGGTTATATTCCTACATCTTGCCTGAAGGAAATTTTGAGAGAGCTC
GACGATCAGCTAACCAACGAAGAATTGGACATGATGATTGACGAAATTGA
TTCCGATGGTTCTGGAACAGTAGATTTTGATGGTGAGTTTATAAAGAGAA
ATAATTTAATTGTTCAGTTAAATAATATAAATTTGATATATAAAACTAGC
AATGACGCAAAATCTGAAATCCTCCTATAAATTGCCAACTCAGTCTCTTC
AGTATATTTTTACTAACAGTCARAACAAACTTTTAAATCAATTCATAATA
TACAACTATAGACTTCAATTATGGTTTTCGATCTAAATACCTCTACTTTC
ATTTTTTAACTCTCACTGTTTGGAAAATGTGTATTGCTTACAGCTATACA
GCTGTACGCTATAACCTTAATGGAACATTCTGTATCTATTGTTAACACTT
CAAATACATAAAAAAATATGGAAAGTAATTTAAAGTTTAACGTTTTCATT
ATTCCTATATTATATCTGTATGAAGCTTCAATATAGTTTAAATTTATAAA
CAAAATTTGTTGATATTGTACTTACTCAATCTACCTATATGATTATATAT
TTGTATGAAGGACAGATACATTTCTGTATAGAAAAATAATTGTTTTATTT
GAATTTAATAATATTAGAAAACGTAAAGATRCAATATGCAAATAAATAAT
TTTAATAAACATCAGATAGAGTCTATGTTTAAAGCACTCACAGTAAGTTA
GTGATTGATTGTTAAAAATTATGTTCAACTATTAAAATTATKTATATAAT
ATTTTATTGCAACGAGTCAAGTAGTTTAGAGTGTTCAGCATCGTATTGTC
ATTTAGTACGTTATATTTTCAACAAGTGATTTAAATATACTATTAGTACC
TATTATTCRTTTTATATAATCAATAATAACTATCTGTTTTATAATTTATA
AGGTATTAAACATGCATTAAAACTTTGTTTTTAGAATTCATGGAAATGAT
GACTGGAGAATAAAGAAATTTGATGGTGTATCATATTGAAGTTATTCGAG
AAATGGGTTTGTCCATCAACACCCTTCAGAATATGTTATTTATTTTGTAC
AAAAACAGAAATTTTTTTATATAAACCACACAAACTTCTATCACACTTAA
CATACTTAAAAAATTATATTTATAAAATACGAAAGATAATAAAATATTAA
GTTTTAACTAATCATGGCACATGATATGAATTTTCGATTAGTGAAACTGG
AGAAAATTTCTTCAGATAGACATCGCTTGTTGTAAAAATTGGATGAAACG
TATACCATTATTATAAATAAACTGTGACTAATTTATTGTTGTAAAAAATA
AGAA back to topCoding sequence (CDS) from alignment at JOTR01000004:1786066..1792919- >rna481 ID=rna481|Name=XM_015508724.1|organism=Diuraphis noxia|type=CDS|length=456bp|location=Sequence derived from alignment at JOTR01000004:1786066..1792919- (Diuraphis noxia)
ATGGAAGATTTACCGCCAGAACAAATCTCAGTCCTCAGGAAAGCTTTCGA
TGCATTTGATCGCGAACGTTCCGGAAGTATACCCACAGACATGGTGGCTG
ATATCTTACGACTTATGGGACAGCCTTTCAACAAGAAGATTCTTGATGAA
CTTATCGAAGAAGTTGATGCAGACAAATCTGGACGTTTGGAGTTTGACGA
ATTCGTAACATTGGCCGCTAAGTTCATTGTTGAAGAAGACGATGAAGCTA
TGCAAAAAGAACTTCGTGAAGCTTTTAGGCTGTACGATAAAGAAGGAAAT
GGTTATATTCCTACATCTTGCCTGAAGGAAATTTTGAGAGAGCTCGACGA
TCAGCTAACCAACGAAGAATTGGACATGATGATTGACGAAATTGATTCCG
ATGGTTCTGGAACAGTAGATTTTGATGAATTCATGGAAATGATGACTGGA
GAATAA back to top
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