Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107162576 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein |
| Product | uncharacterized LOC107162576 |
| Transcript id | XM_015509531.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107162576 |
| Genbank | XM_015509531.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107162576 | gene3703 | Diuraphis noxia | gene | JOTR01000112 596772..598536 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015365017.1 | cds5317 | Diuraphis noxia | CDS | JOTR01000112 596772..596889 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna5485 ID=rna5485|Name=XM_015509531.1|organism=Diuraphis noxia|type=mRNA|length=903bp|location=Sequence derived from alignment at JOTR01000112:596772..598536+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
atgaatgacatacaagaaaaatttattttgaatgtagGCGATACAAACGT
CCATAGAATTGTTCAGAAATACGTggaaaatcatgaaaattcaaaCGATT
ATATCGCAAATCCCAATGTGTTGGATGAGTATTTCTGCAATGAtggaaaa
atatcaattattagtgMTGTTTCAGATAATTTTAAGGACGTCCAGaggAA
AAAATCAGCACAATCTGATATTGAAGACAGTGGTGAATTATTATCGTACC
ACGAGAAGAATATACAGTTAGAAACAATCGAAAAAGAGTTCAAGGGATTA
AATataaaaaatgaattactcaCTGATCAAGTTCAAATAATCACCGATCG
RAACAAGTTAAGTAACGATCAAATAAAGTCGATCAAAGCTGAAATACAca
aGATTCAAACCGAAATCGAAATTATGCACGACAGGAAGACAAATAAAGAA
TTGGAAAACGCTGCTTACTTTAAAGCCATCGTAGACAAAATGGTGGAAAT
CCATTGCCATATCGACCAATTTACAGAGGTAGTAAACGGTTTGAAGCTCG
AGCTAGAAGATgcgtgtgaaaataaaaaaacgattaCAGAGATAATGGAA
GTGTCAGAGTATTTGAGAGCCTATTATTTTATGCGAGTGACCGAAGACCA
GAGAAATTTTACTGAACAAATAAGTAAACACGCGAGCGAAATCGATCAGT
TAAAAACGTTTGCGGATATTAAAACTAAAGAAGTAGATATGCTGAGAGAA
CGTGCTAATGAACAAAAACTTTCCATTGATTCTAATGAAAAATCGATGAA
ATACATTACCGAtaagAACAGTTTATATGTGGCTTTGCGTGGCGCATTGG
CTGTTACCGATTGCGGAATGCGACTAGAAGTAAGTAACGGCGACAGCCAC
TAG back to topprotein sequence of XM_015509531.1 >rna5485 ID=rna5485|Name=XM_015509531.1|organism=Diuraphis noxia|type=polypeptide|length=301bp
MNDIQEKFILNVGDTNVHRIVQKYVENHENSNDYIANPNVLDEYFCNDGK
ISIISXVSDNFKDVQRKKSAQSDIEDSGELLSYHEKNIQLETIEKEFKGL
NIKNELLTDQVQIITDRNKLSNDQIKSIKAEIHKIQTEIEIMHDRKTNKE
LENAAYFKAIVDKMVEIHCHIDQFTEVVNGLKLELEDACENKKTITEIME
VSEYLRAYYFMRVTEDQRNFTEQISKHASEIDQLKTFADIKTKEVDMLRE
RANEQKLSIDSNEKSMKYITDKNSLYVALRGALAVTDCGMRLEVSNGDSH
. back to topmRNA from alignment at JOTR01000112:596772..598536+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5485 ID=rna5485|Name=XM_015509531.1|organism=Diuraphis noxia|type=mRNA|length=1765bp|location=Sequence derived from alignment at JOTR01000112:596772..598536+ (Diuraphis noxia)
atgaatgacatacaagaaaaatttattttgaatgtagGCGATACAAACGT
CCATAGAATTGTTCAGAAATACGTggaaaatcatgaaaattcaaaCGATT
ATATCGCAAATCCCAATGGTAAATTTTTGTWGAATATTAGTTTGAAATTT
GGTATAAAAGTAATTTGGGTGAacgagtattaaaataatattcatgtatt
ttATCTAAACCTAATTCATATGYGATATACttacaaattaaacattacat
attaCTCTTTATAGTGTTGGATGAGTATTTCTGCAATGAtggaaaaatat
caattattagtgMTGTTTCAGATAATTTTAAGGACGTCCAGGTAAAAATA
CggattcataaatttatttaaatttagatcaGACAATTATTGTAcaagaa
atataaatagtaattaatgttaaatctatattatagtttgtttttttcaa
cagaataatgatactatatacctaatcaaattgtaataaataataattga
atttagaGTGGTTATATTAAATAGKTTAGgttaatcatattatcatatta
tcttactagtattataattttaatttattagaggAAAAAATCAGCACAAT
CTGATATTGAAGACAGTGGTGAATTATTATCGTACCACGAGAAGAATATA
CAGTTAGAAACAATCGAAAAAGAGTTCAAGGGATTAAATGTAAGAGTGGC
TTGGTCGTCAAATGACGAGCGTATAAGCGTCCgtaaagtgtttaaaatat
ttgctaatttattgattataaattataatatctatctacagataaaaaat
gaattactcaCTGATCAAGTTCAAATAATCACCGATCGRAACAAGTTAAG
TAACGATCAAATAAAGTCGATCAAAGCTGAAATACAcaagtacctataca
caatagCCAATATAGTcgcataatatatgcatataatttgtTCATTATAG
TAAacagaattaataatatcattattattgtggtaACATTATTGTCTTGG
TAGGATTCAAACCGAAATCGAAATTATGCACGACAGGAAGACAAATAAAG
AATTGGAAAACGCTGCTTACTTTAAAGCCATCGTAGACAAAATGGTGGAA
ATCCATTGCCATATCGACCAATTTACAGAGGTAGTAAACGGTTTGAAGCT
CGAGCTAGAAGATgcgtgtgaaaataaaaaaacgattaCAGAGATAATGG
AAGTGTCAGAGTATTTGAGAGCCTATTATTTTATGCGAGTGACCGAAGAC
CAGAGAAATTTTACTGAACAAATAAGTAAACACGCGAGCGAAATCGATCA
GTTAAAAACGTTTGCGGATATTAAAACTAAAGAAGTAGATATGCTGAGAG
AACGTGCTAATGAACAAAAACTTTCCATTGATTCTAATGAAAAATCGATG
AAATACATTACCGAtaaggtatacattattttatttcatatttattggcA
ACGATATAATTACAGTACACTTTTCATCCAAATTCGAGTgcatagattta
aatatttaatcaatacctatattaacattcagttgttttctttttagtat
taataaagattaattacaaaatataatatataacgtaatTTGATcacaat
aatgtaattatataaaatattatgtttatgattatgACATTTGATCGACT
GCATATTATTGATCTATATTACCAATAGAACAGTTTATATGTGGCTTTGC
GTGGCGCATTGGCTGTTACCGATTGCGGAATGCGACTAGAAGTAAGTAAC
GGCGACAGCCACTAG back to topCoding sequence (CDS) from alignment at JOTR01000112:596772..598536+ >rna5485 ID=rna5485|Name=XM_015509531.1|organism=Diuraphis noxia|type=CDS|length=903bp|location=Sequence derived from alignment at JOTR01000112:596772..598536+ (Diuraphis noxia)
atgaatgacatacaagaaaaatttattttgaatgtagGCGATACAAACGT
CCATAGAATTGTTCAGAAATACGTggaaaatcatgaaaattcaaaCGATT
ATATCGCAAATCCCAATGTGTTGGATGAGTATTTCTGCAATGAtggaaaa
atatcaattattagtgMTGTTTCAGATAATTTTAAGGACGTCCAGaggAA
AAAATCAGCACAATCTGATATTGAAGACAGTGGTGAATTATTATCGTACC
ACGAGAAGAATATACAGTTAGAAACAATCGAAAAAGAGTTCAAGGGATTA
AATataaaaaatgaattactcaCTGATCAAGTTCAAATAATCACCGATCG
RAACAAGTTAAGTAACGATCAAATAAAGTCGATCAAAGCTGAAATACAca
aGATTCAAACCGAAATCGAAATTATGCACGACAGGAAGACAAATAAAGAA
TTGGAAAACGCTGCTTACTTTAAAGCCATCGTAGACAAAATGGTGGAAAT
CCATTGCCATATCGACCAATTTACAGAGGTAGTAAACGGTTTGAAGCTCG
AGCTAGAAGATgcgtgtgaaaataaaaaaacgattaCAGAGATAATGGAA
GTGTCAGAGTATTTGAGAGCCTATTATTTTATGCGAGTGACCGAAGACCA
GAGAAATTTTACTGAACAAATAAGTAAACACGCGAGCGAAATCGATCAGT
TAAAAACGTTTGCGGATATTAAAACTAAAGAAGTAGATATGCTGAGAGAA
CGTGCTAATGAACAAAAACTTTCCATTGATTCTAATGAAAAATCGATGAA
ATACATTACCGAtaagAACAGTTTATATGTGGCTTTGCGTGGCGCATTGG
CTGTTACCGATTGCGGAATGCGACTAGAAGTAAGTAACGGCGACAGCCAC
TAG back to top
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