Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107162627 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | protein N-lysine methyltransferase METTL20-like, transcript variant X1 |
| Transcript id | XM_015509615.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107162627 |
| Genbank | XM_015509615.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107162627 | gene403 | Diuraphis noxia | gene | JOTR01000005 1800823..1802280 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id5397 | id5397 | Diuraphis noxia | exon | JOTR01000005 1800823..1801461 + |
| id5398 | id5398 | Diuraphis noxia | exon | JOTR01000005 1801537..1801667 + |
| id5399 | id5399 | Diuraphis noxia | exon | JOTR01000005 1801727..1802280 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015365101.1 | cds577 | Diuraphis noxia | CDS | JOTR01000005 1801211..1801461 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna592 ID=rna592|Name=XM_015509615.1|organism=Diuraphis noxia|type=mRNA|length=1324bp|location=Sequence derived from alignment at JOTR01000005:1800823..1802280+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TGTGAACCTGTATcaaataccaataaattattttaagttgtattttttgt
ttcaaattttcacCAAGGTCCGAAAATTAACAATTCTACCTATAGAGATT
TGTCGCAGTGATAGTCATGGCTAAATTATTTAGGTGATATTTATTTAGCC
ATGGTGGCATGGTATTAATTATCCTTAGTGGCgccttaaattttaaattg
tgacaTGCCAGTAAAGTTGAAAAAATTCTGATTACAGTTTGtgaatcaac
aatattatattgatatcataGACCTATAGGTCTAGGCCCCATGGTtaata
tacttacttaatatagtaatgacatttataattttagatagaTCATGACA
ATTGAGTCACCTTTGAATTTGACAACaacttttcaaaaatgaatGTGAGG
TATCATTCTATTGTAgactcaattaaaattatttccaaaagaTATTGCAG
TCATAGTGAACAATACTATGccgaacaaataaaaaatgcaacTGTTGTAT
GTACAAACCACTTAACTccagaaataaaattacatttaattactgAACAG
TGTAAACTGTGGCATTCACCTGTCTATGAATGTCAGTTTAATGATCCATT
CTGGGCATTTTATTGGCCAGGTGGCCAAGCTATTtctagGTTTATACTAG
ATAACAGCAAGTATGTgaacaacaaaacaattttgGATATTGGTAGTGGT
AGTGCCGCATGCAGTCTTGCATCAGCTTTAGCGGGTGCCAGTCAAGTTAC
AGCCAATGACATAGATCCTGTTGCCTGTGTAGCAGCTAAACTAAATGCTC
AATTAAACAACATCAAAATTGATGTATTGCCTAAGAACATTTTGTTCAAT
GATTGTTCGCAATGGGAAGTCATCATTGTTGGAgatatgttttattcaaa
agaTATTGCTGATGAACTGTGGAAATGGCTGGATGCACTGAGTAACAGTG
GGAAGACTATATTGATAGGAGATCCGGGTAGACATTGTTTCAAGCCTGAA
CGTCATTTACAGGAGCGTTTAAAAAAACTTGAAGAATACAAATTAACAGA
AAATTGTTGTTTAGAAAATCGAGGATTTTCCACTGCATCTGTCTggattt
tagtataaaattattaggtatataccatGTATCCCCAAAAACAGGTTACA
CTTTTTTACATTAAACTAGACTTATCGATCATAAATTCTTATGACttaaa
cttcatttttttttaaatgacattcattattttaaatatatttttcgtat
tgATCGATTTTACTCAAGACATTTTTGATGAATCAACTTGTTTTAAactg
aaaattgtataaattggaGGTATA back to topprotein sequence of XM_015509615.1 >rna592 ID=rna592|Name=XM_015509615.1|organism=Diuraphis noxia|type=polypeptide|length=240bp
MNVRYHSIVDSIKIISKRYCSHSEQYYAEQIKNATVVCTNHLTPEIKLHL
ITEQCKLWHSPVYECQFNDPFWAFYWPGGQAISRFILDNSKYVNNKTILD
IGSGSAACSLASALAGASQVTANDIDPVACVAAKLNAQLNNIKIDVLPKN
ILFNDCSQWEVIIVGDMFYSKDIADELWKWLDALSNSGKTILIGDPGRHC
FKPERHLQERLKKLEEYKLTENCCLENRGFSTASVWILV. back to topmRNA from alignment at JOTR01000005:1800823..1802280+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna592 ID=rna592|Name=XM_015509615.1|organism=Diuraphis noxia|type=mRNA|length=1458bp|location=Sequence derived from alignment at JOTR01000005:1800823..1802280+ (Diuraphis noxia)
TGTGAACCTGTATcaaataccaataaattattttaagttgtattttttgt
ttcaaattttcacCAAGGTCCGAAAATTAACAATTCTACCTATAGAGATT
TGTCGCAGTGATAGTCATGGCTAAATTATTTAGGTGATATTTATTTAGCC
ATGGTGGCATGGTATTAATTATCCTTAGTGGCgccttaaattttaaattg
tgacaTGCCAGTAAAGTTGAAAAAATTCTGATTACAGTTTGtgaatcaac
aatattatattgatatcataGACCTATAGGTCTAGGCCCCATGGTtaata
tacttacttaatatagtaatgacatttataattttagatagaTCATGACA
ATTGAGTCACCTTTGAATTTGACAACaacttttcaaaaatgaatGTGAGG
TATCATTCTATTGTAgactcaattaaaattatttccaaaagaTATTGCAG
TCATAGTGAACAATACTATGccgaacaaataaaaaatgcaacTGTTGTAT
GTACAAACCACTTAACTccagaaataaaattacatttaattactgAACAG
TGTAAACTGTGGCATTCACCTGTCTATGAATGTCAGTTTAATGATCCATT
CTGGGCATTTTATTGGCCAGGTGGCCAAGCTATTtctaggtaaaataaat
taggaaaaattatattcatacctGTACAACATGCTTTCcctaatatttgt
ttgtttggtTTTAGGTTTATACTAGATAACAGCAAGTATGTgaacaacaa
aacaattttgGATATTGGTAGTGGTAGTGCCGCATGCAGTCTTGCATCAG
CTTTAGCGGGTGCCAGTCAAGTTACAGCCAATGACATAGATCCTGGTAca
gtcattatatttatttcacttcatttcataaaatgtattttttggttTTG
ACAGTTGCCTGTGTAGCAGCTAAACTAAATGCTCAATTAAACAACATCAA
AATTGATGTATTGCCTAAGAACATTTTGTTCAATGATTGTTCGCAATGGG
AAGTCATCATTGTTGGAgatatgttttattcaaaagaTATTGCTGATGAA
CTGTGGAAATGGCTGGATGCACTGAGTAACAGTGGGAAGACTATATTGAT
AGGAGATCCGGGTAGACATTGTTTCAAGCCTGAACGTCATTTACAGGAGC
GTTTAAAAAAACTTGAAGAATACAAATTAACAGAAAATTGTTGTTTAGAA
AATCGAGGATTTTCCACTGCATCTGTCTggattttagtataaaattatta
ggtatataccatGTATCCCCAAAAACAGGTTACACTTTTTTACATTAAAC
TAGACTTATCGATCATAAATTCTTATGACttaaacttcatttttttttaa
atgacattcattattttaaatatatttttcgtattgATCGATTTTACTCA
AGACATTTTTGATGAATCAACTTGTTTTAAactgaaaattgtataaattg
gaGGTATA back to topCoding sequence (CDS) from alignment at JOTR01000005:1800823..1802280+ >rna592 ID=rna592|Name=XM_015509615.1|organism=Diuraphis noxia|type=CDS|length=720bp|location=Sequence derived from alignment at JOTR01000005:1800823..1802280+ (Diuraphis noxia)
atgaatGTGAGGTATCATTCTATTGTAgactcaattaaaattatttccaa
aagaTATTGCAGTCATAGTGAACAATACTATGccgaacaaataaaaaatg
caacTGTTGTATGTACAAACCACTTAACTccagaaataaaattacattta
attactgAACAGTGTAAACTGTGGCATTCACCTGTCTATGAATGTCAGTT
TAATGATCCATTCTGGGCATTTTATTGGCCAGGTGGCCAAGCTATTtcta
gGTTTATACTAGATAACAGCAAGTATGTgaacaacaaaacaattttgGAT
ATTGGTAGTGGTAGTGCCGCATGCAGTCTTGCATCAGCTTTAGCGGGTGC
CAGTCAAGTTACAGCCAATGACATAGATCCTGTTGCCTGTGTAGCAGCTA
AACTAAATGCTCAATTAAACAACATCAAAATTGATGTATTGCCTAAGAAC
ATTTTGTTCAATGATTGTTCGCAATGGGAAGTCATCATTGTTGGAgatat
gttttattcaaaagaTATTGCTGATGAACTGTGGAAATGGCTGGATGCAC
TGAGTAACAGTGGGAAGACTATATTGATAGGAGATCCGGGTAGACATTGT
TTCAAGCCTGAACGTCATTTACAGGAGCGTTTAAAAAAACTTGAAGAATA
CAAATTAACAGAAAATTGTTGTTTAGAAAATCGAGGATTTTCCACTGCAT
CTGTCTggattttagtataa back to top
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