Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107164248 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | traB domain-containing protein |
| Transcript id | XM_015512001.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107164248 |
| Genbank | XM_015512001.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107164248 | gene5206 | Diuraphis noxia | gene | JOTR01000190 148838..153784 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015367487.1 | cds7508 | Diuraphis noxia | CDS | JOTR01000190 153459..153581 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna7749 ID=rna7749|Name=XM_015512001.1|organism=Diuraphis noxia|type=mRNA|length=1172bp|location=Sequence derived from alignment at JOTR01000190:148838..153784- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TACCTTAGGYATCTGAAAATAAAAAAATCTCTATTAATTGAGTTACTAAC
AATATTTGAAATGGTAGACAATCAAGTTACGTTTCCAGACACTGTCACAG
TACTTAAATCATCAAATGGTTCTGTAGTGTATCTTGTTGGTACTGCTCAT
TTTAGTAAAGAGAGTCAAGAAGATGTCGCTCAAGTAATAAATGCAGTAAA
ACCAGATGTTGTTGTAATAGAATTGTGCTATAACAGAAATAGCATATTGA
CAATTGATGAATCCACTATTGCTAATGTTTCAGGCATTTCATTAGAAGAT
TTGAAAGGGTCAATAAAAAAACTAGGCCTTACTCAAGGTATATTTTATCA
ACTGATGATAAATATATCAGCAAATATATCTCGTGATCTTGGCATGATAC
CTGGTGGTGAATTTCGTAGAGCTGTCATTGAAGCTAAAAAATATAACAGC
CACATTTATCTAGGTGATAGACCAGTTGATATCACTATAAAAAGAGTGAT
TTCAATGTTGAGTTGGCCAAAGAGTATTAAACTTTTGGCACACTTGCTAT
TTACTGCTGATTTTAAAATTACAAAAGAAGATGTGGAAAAATTCAAAAAC
AAAGACTTACTAGAAACTTTAATGCATGAAATGGCTGCTGACTATCCAGA
ATTGGAGCGAGTAATAGTTGATGAAAGAGATAAGTTCTTAACTTATAGTT
TACAAAATTGTGCTGGATTTGTTATAGAAAAAATTGGCAATAAGCCTAAT
GTATTTAATTCAAGACCTCAAGTTATTGTTGGTGTGGTTGGATTAGGTCA
CGTTGCTGGTATTAAAAAATATTGGGAAAAAATTGCTGATGAGCAAATAG
CAGAACTAATTATAATTCCACCTCAATCAAGAAGTAGTAAAGTTATTAAA
GTTGTCATCAAAGTTTCTGCCTATGGTTTACTTTTATGGGGTGTTTCAAA
GATCCCTGGTGTAAGATCGCTATCAAAAATGGCTTATGAAGCAGTTACTT
CTACATATGTTCAAGGGAAATTTATAAAATTACAATAAACTATAAAATAA
TCAATATTCCATTATATATTATTATAATTTATGTTTTAAATAATAAGTTG
CAAATACAACTATTCTAATAATGTTAAGTAATAATCAAAGMGAAGATAAT
TACGATCACATTGATGATTCAC back to topprotein sequence of XM_015512001.1 >rna7749 ID=rna7749|Name=XM_015512001.1|organism=Diuraphis noxia|type=polypeptide|length=326bp
MVDNQVTFPDTVTVLKSSNGSVVYLVGTAHFSKESQEDVAQVINAVKPDV
VVIELCYNRNSILTIDESTIANVSGISLEDLKGSIKKLGLTQGIFYQLMI
NISANISRDLGMIPGGEFRRAVIEAKKYNSHIYLGDRPVDITIKRVISML
SWPKSIKLLAHLLFTADFKITKEDVEKFKNKDLLETLMHEMAADYPELER
VIVDERDKFLTYSLQNCAGFVIEKIGNKPNVFNSRPQVIVGVVGLGHVAG
IKKYWEKIADEQIAELIIIPPQSRSSKVIKVVIKVSAYGLLLWGVSKIPG
VRSLSKMAYEAVTSTYVQGKFIKLQ. back to topmRNA from alignment at JOTR01000190:148838..153784- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7749 ID=rna7749|Name=XM_015512001.1|organism=Diuraphis noxia|type=mRNA|length=4947bp|location=Sequence derived from alignment at JOTR01000190:148838..153784- (Diuraphis noxia)
TACCTTAGGYATCTGAAAATAAAAAAATCTCTATTAAGTAAGTATTAAAA
ACAGTTAAAACCAGTAAAACTATAAAATAGATTATCTAATAATTCTTAAC
AAATTTTAGTAAATCTTTATYTTTTCATTTCTAAATCAACAATCAGAATT
AATTTTAAGTACTTAAATTTTAATTTTTAGTTGAGTTACTAACAATATTT
GAAATGGTAGACAATCAAGTTACGTTTCCAGACACTGTCACAGTACTTAA
ATCATCAAATGGTTCTGTAGTGTATCTTGTTGGTACTGCTCATTTTAGTA
AAGAGAGTCAAGAAGATGTCGCTCAAGTATATTATGATATAAAATACTGG
ATATAATGAAATATTTACTTAATTTTTTTTTTTTGTTATTTAATTAATAG
GTAATAAATGCAGTAAAACCAGATGTTGTTGTAATAGAATTGTGCTATAA
CAGAAATAGCATATTGACAATTGATGAATCCACTATTGCTAATGTTTCAG
GCATTTCATTAGGTATTTATATTATTGATAATTTTTACTTAAATGATACA
TAACTAAAAATATCCTGACGTCKAKTCCAAAGTTTRAACTTTTGACCGCT
TTATGTATTAATGTGTGATAGACCAATGTTAGATAAGTTACTCTAATTGT
TACTTAAATAAAATTGTATTTAAATTACTTTACTTTTCAATACTTAAGTA
ACTAAGGGTCTATAATACTTTATCATACCAAAAACAAATTTCTGATATTT
TATTTAATTGTTGACAATTATCAGTTTACAAGCAACTTAACTAGAAATAT
ACAACAATAAAAATGTTAAGAATCAGAATGTAATAATCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTAAAGTCTAAATTGTTTTTATTTTTGGGTTGAGACC
TATATGTTTATGGGTTTTTATACCAACTGCTGGTAAACTATTTATAAACA
AAAAATTAGATGAACGACCTTATGAATGCGTTCATTTTTTCAAAGAACGT
GAACGTGAACGTGAACGCATTCGTTTGAAAAATCATGAACGTGAACGAGT
TCCTTTTTCAAGGACTGAACGTGAACGTGAACGTGAACGAATTCATTCTT
TTAGTGAACGTTCCGAACACTGGTAATAATACATATAAAACACGAATACA
CGATACAGCTGTCAACTGATTGACTGATACTGACTATAGAATTAWAGTTC
TCATTGACATAATTAAATATGAAATTTAAATCATAATTTTTTAAAGATAT
CCCCTCACATCAATAAATAGCATGAACAGTTCATTATAAATAAGCTAATG
GCTATTGAAAACTAAATTGTATAGAATTAAAATTAAATTTATACATTATA
ATAAATTATATTGGTATACTTAATACTCGCATTATACATATTTTCAGTGT
TGGGTAAGTTACTTTTTAAAAGTAACTAAGTTACGTTACAAGTTACAAAA
TAAAATAGGTTACTAGATTACTTGTTACTTGTTAGTTACTCAAGTACAAA
AGTAATGTGTAACGTTACATTTTTTTTCAAAAGTAACTAGTTACAATGAC
GTTACTTTTACCACTGACAACTGTGATAAATGATAATGTATTTATGCATT
GTTGACAAAAGCTCCGGCCTACCATACCAATAGTTATCAACGATAATCCT
TCCGACAATCTTTCCGTATGTCGATGTACATATTTTATCAGATATGATCT
AAAAATAAATAAACTAATAAACTATAGCAGTTGCTGCCTGTATAGGCTGT
AATCGATGCTAATTTATAATCAGTTAAATTGAAAATAATATTTACACAAA
ATTGTTTATTTATATAATTATATTRGATTATACTGGGAAAATGTTGTAAT
TACATAAATATCTACTTAAATAGTTTAAATTATTAATAAAATTACAATAT
CTGATCCGGATACGAGGGCAAGAACTGCTCTGTGAAGTTGAATCATGATA
TCCCCCCCATAAAAAAAAATAAAATTTAATTTATAATGTAATGCGCTCTT
CTGACAAGTTACTTCTAAATAATTAACGTAGTTACAATWGCATTACCCAA
AAATAATAATAACAAAGTTACCATAACATTACTGAAAAATGTAACTAAGT
TACAGTACGAGTAACGCAYGTTACRTTACTACCCAACACTGCATATTTAT
TGTTATAATTATTTAAAAATTCTAATTATATTTCCTCACATGTTACAAAC
TATAAGTAACAACCAAACTCTACATTTGATCTACAAAAGAGGAAGTTCGG
TACCTTAGAATAAAATACTTAAAAATGTAAAATTTAGAATTTACATTAAT
TTAAATTATGCTTTACTTGTTTATATTATGTATCTTATTAATATTAAGTA
AATAGAAGTTGATTCTATCCTGATCAGATTATTAAGTATTTTAAAGTAAT
TCCCCCGTGTCATTGAAGTATTTGTATTTCAAATTTGCAACCATAGCTAA
TATTAAAATTAAAAATAAAACAATAATTATTTCACATCTAATAATAATAA
GTATAAAAAAATTAACTCATTTATTTAAATATTTTTAAATAACCCTACAA
ATGCTAATTTTGGCAGGGGTCCAGATTGAACATACATATTTAATAAATTG
GACAAAATCAATGTATTAATAAAATAGTAAATAAATACATTGTGATAGTC
ACATAATTCAAAAATATCTGTTTATAATGACAAGTACATATATATAACTC
ATGATAGTTATAATTCTCTAGTTATATATATTTATATTTTATATCAATGC
ATCATTTATTTATACCTATCAACTCTTTGAAATAACTAATGTAAATTTAT
AATTTTATTGTTATAGAAGATTTGAAAGGGTCAATAAAAAAACTAGGCCT
TACTCAAGGTATATTTTATCAACTGATGATAAATATATCAGCAAATATAT
CTCGTGATCTTGGCATGATACCTGGTGGTGAATTTCGTAGAGCTGTCATT
GAAGTATTAATTTGTCACAATTTTTCCTATTGTAGTTTACATATAAATAT
TTACAACATTTTTTTTATTAAAATTTAGGCTAAAAAATATAACAGCCACA
TTTATCTAGGTGATAGACCAGTTGATATCACTATAAAAAGAGTGATTTCA
ATGTTGAGTTGGCCAAAGAGTATTAAACTTTTGGCACACTTGCTATTTAC
TGCTGATTTTAAAATTACGTAAGTTTTACTTAACGTTTTCTTTATGAAAT
ATAATTTATAAACATAAAACTATTTTTTATTATTAGAAAAGAAGATGTGG
AAAAATTCAAAAACAAAGACTTACTAGAAACTTTAATGCATGAAATGGCT
GCTGACTATCCAGAATTGGAGCGAGTAATAGTTGATGAAAGAGATAAGTT
CTTAACTTATAGTTTACAAAATTGTGCTGGATTTGTTATAGAAAAAATTG
GCAATAAGCCTAATGTATTTAATTCAAGTTAGTAAAAGAGTGAATGTATA
GTTATTGTTTGTTCATTTATAAATCTTTGAATGATAACAATAATGGTAAA
TATAATTTAAAATAGGACCTCAAGTTATTGTTGGTGTGGTTGGATTAGGT
CACGTTGCTGGTATTAAAAAATATTGGGAAAAAATTGCTGATGAGCAAAT
AGCAGAACTAATTATGTAAGTTATTAGTTGATTGAATATTACCTATCTTT
AATTAATATATGTACACACAAGTATATACAAATTTTCTATACTACAGGAT
TAAATAAAAGGATCTGATTTTTATGTTATACGCAATAATTGAATATAAAA
AAATATATTATCCTAAAATTTAAAATGGCAATGTTTATTTTTGTTTAGAA
TTCCACCTCAATCAAGAAGTAGTAAAGTTATTAAAGTTGTCATCAAAGTT
TCTGCCTATGGTTTACTTTTATGGGGTGTTTCAAAGATCCCTGGTGTAAG
ATCGCTATCAAAAATGGCTTATGAAGCAGTTACTTCTACATATGTTCAAG
GGAAATTTATAAAATTACAATAAACTATAAAATAATCAATATTCCATTAT
ATATTATTATAATTTATGGTATGTATAGAAATCAATTTTTTATGACTATT
TCTCTAGTATTTTTWTTTATAAATTGTGTCAATTCAATTTAGACAACCCT
AAGTATGTAAAATGTTGAAGTGGGATAAAATCTTTTATAAGTTGCTATCA
ATTCAGATGTACCTGTCTAATAAACTASTATGGATATTTCACATAATGGT
TTATTTGAACTGGTACATTTAAATTAAAAAAGATTTCATCCCATTTTAAC
AACTCTGATGGTTAGGTTAAAATCAATTGCACRATTAACATTGTCAATGT
TAAGGCAAACATTATTGCTATATCTCTTTCAGAAATTTAAGTCCAATAAA
TAAATTTTTTTACTTAGTTTTATTTAACTAACCATAGTTCCAAMACATAA
ACATACACTAATGATAGAACAGTGGTTCTCGACCAGTGTGCTGTGAAAAA
TATCTGATATTTGTAATTATGCTGTTTAAAACAGTATTTTATTCCATTAA
ATTTGTGTTAAGTATGCTGTGAACCAAAAAAGCTTGAGAATCACTGGTAT
AGAGTCTAGAATAAAGTTAATATACCATTAGACATTGTAGATGTTTAGCA
TTTCCTTTTATTGTAATTTGGTGTATATTGTATTATTTATATACTTTAAC
ATTTTGTACTATTTATTTTTGTTAATAAATTTAGGGTATCATCTTATTTT
TGTTTCAGTTTTAAATAATAAGTTGCAAATACAACTATTCTAATAATGTT
AAGTAATAATCAAAGMGAAGATAATTACGATCACATTGATGATTCAC back to topCoding sequence (CDS) from alignment at JOTR01000190:148838..153784- >rna7749 ID=rna7749|Name=XM_015512001.1|organism=Diuraphis noxia|type=CDS|length=978bp|location=Sequence derived from alignment at JOTR01000190:148838..153784- (Diuraphis noxia)
ATGGTAGACAATCAAGTTACGTTTCCAGACACTGTCACAGTACTTAAATC
ATCAAATGGTTCTGTAGTGTATCTTGTTGGTACTGCTCATTTTAGTAAAG
AGAGTCAAGAAGATGTCGCTCAAGTAATAAATGCAGTAAAACCAGATGTT
GTTGTAATAGAATTGTGCTATAACAGAAATAGCATATTGACAATTGATGA
ATCCACTATTGCTAATGTTTCAGGCATTTCATTAGAAGATTTGAAAGGGT
CAATAAAAAAACTAGGCCTTACTCAAGGTATATTTTATCAACTGATGATA
AATATATCAGCAAATATATCTCGTGATCTTGGCATGATACCTGGTGGTGA
ATTTCGTAGAGCTGTCATTGAAGCTAAAAAATATAACAGCCACATTTATC
TAGGTGATAGACCAGTTGATATCACTATAAAAAGAGTGATTTCAATGTTG
AGTTGGCCAAAGAGTATTAAACTTTTGGCACACTTGCTATTTACTGCTGA
TTTTAAAATTACAAAAGAAGATGTGGAAAAATTCAAAAACAAAGACTTAC
TAGAAACTTTAATGCATGAAATGGCTGCTGACTATCCAGAATTGGAGCGA
GTAATAGTTGATGAAAGAGATAAGTTCTTAACTTATAGTTTACAAAATTG
TGCTGGATTTGTTATAGAAAAAATTGGCAATAAGCCTAATGTATTTAATT
CAAGACCTCAAGTTATTGTTGGTGTGGTTGGATTAGGTCACGTTGCTGGT
ATTAAAAAATATTGGGAAAAAATTGCTGATGAGCAAATAGCAGAACTAAT
TATAATTCCACCTCAATCAAGAAGTAGTAAAGTTATTAAAGTTGTCATCA
AAGTTTCTGCCTATGGTTTACTTTTATGGGGTGTTTCAAAGATCCCTGGT
GTAAGATCGCTATCAAAAATGGCTTATGAAGCAGTTACTTCTACATATGT
TCAAGGGAAATTTATAAAATTACAATAA back to top
|