Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107164326 |
| Model evidence | Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | E3 ubiquitin-protein ligase MYLIP-like |
| Transcript id | XM_015512107.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107164326 |
| Genbank | XM_015512107.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107164326 | gene5258 | Diuraphis noxia | gene | JOTR01000194 84899..86592 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015367593.1 | cds7573 | Diuraphis noxia | CDS | JOTR01000194 86450..86455 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna7817 ID=rna7817|Name=XM_015512107.1|organism=Diuraphis noxia|type=mRNA|length=1208bp|location=Sequence derived from alignment at JOTR01000194:84899..86592- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TGGCACAGGCTGAATTTGGTGATTGCAATGATTCAGTTGCTCTTGTTCAG
TTTTTTACCTATTGGTGTGAACATCTGGGCGCACCTAAAGATGAAGACGA
GTTTATCATTGATCATATTCAAAGTCTTCAATCTGAAATGAAAGGTATGA
AACAAACAACTGCTGAATATTGGTTGATTAAAGAAGTCTCTGGCCTACAA
AATTTTGGTGAAGAGGTGTTTGAAGGCAGAACAACAAACGGTTCTTCART
ATTGGTAGGAGTTGGACCACATGGTATTAGTTTGGAGCACCCAGATCAAG
TTGATCATGAAAAACAAATGATTCCTTATACCGYGATCCGCAGTGCTGCC
AGCCATCGTCGTGTATTTGAGATGTGGTATTTGGCAGGTGTTGAACATTC
CGAAACACTATTTGTATTGAAATTAGAATCTAGCCTGGGTGCAAATACTC
TATATAGAGCACTTACGGAAAAACATGCATTCTATAGTTGTGAAACGGTC
AGAGGGGCTGTTACATCACAATATATCAGGGATCTCAAGGGTACAATTAT
ATCTATATTTAATGAAGATTCACCGTTAGGGAAGAAATATGTGTTCGACA
TACAGAGGACCTGCCGTGAAGTGCATGATAATGCACGCCGTGCACTTTAC
GAAAAGCAAAACAAAGTTACACCATCTAGCTCTTCAGTGGTACTGAGTTC
ACCTGAACCYGAGCCAACAACTTCAMAGGATAGCTACAAATTGGCCAAGC
TCATTGATGCACTTACATGTAGAATTTGCATGGATGCCACTATTGATCAT
GTATTTTTCCCATGTGGCCATGTTATTGCATGTGGAACATGTGTTAAACG
ATGTGAAACTTGCCCATTGTGTCGAGGTGCAATTGATGAATCTAGACATG
TGTTTATTCCAACTTTAGCTGACTTGCCTGGTCTTCATCATTGATGCTAT
AACCTAGTAAAGTATGTTCAAATCATGATGACTCGTAGAAGGTGTACTGT
CGTCAAAATTGACCTCAAAGCATGAACGTCTGTGATAATGCTAATATATA
AAAACTTCCTATACTTTCATACTTATTTATTTTTGTTAAAACAATTTTTW
TATAGTATTGATGTAAAAAATGGAAAGGAAATTTCATTTGTATCATTTAC
ATTTTGTTAATAATTCATTTAGTTTAAGGTAATATATTTTTAAGTATACT
TTTTATAC back to topprotein sequence of XM_015512107.1 >rna7817 ID=rna7817|Name=XM_015512107.1|organism=Diuraphis noxia|type=polypeptide|length=269bp
MKGMKQTTAEYWLIKEVSGLQNFGEEVFEGRTTNGSSXLVGVGPHGISLE
HPDQVDHEKQMIPYTXIRSAASHRRVFEMWYLAGVEHSETLFVLKLESSL
GANTLYRALTEKHAFYSCETVRGAVTSQYIRDLKGTIISIFNEDSPLGKK
YVFDIQRTCREVHDNARRALYEKQNKVTPSSSSVVLSSPEPEPTTSXDSY
KLAKLIDALTCRICMDATIDHVFFPCGHVIACGTCVKRCETCPLCRGAID
ESRHVFIPTLADLPGLHH. back to topmRNA from alignment at JOTR01000194:84899..86592- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7817 ID=rna7817|Name=XM_015512107.1|organism=Diuraphis noxia|type=mRNA|length=1694bp|location=Sequence derived from alignment at JOTR01000194:84899..86592- (Diuraphis noxia)
TGGCACAGGCTGAATTTGGTGATTGCAATGATTCAGTTGCTCTTGTTCAG
TTTTTTACCTATTGGTGTGAACATCTGGGCGCACCTAAAGATGAAGACGA
GTTTATCATTGATCATATTCAAAGTCTTCAATCTGAAATGAAAGTATGTG
TGATATAATTTCATTTTTATTATTTATTGTAGTCTGAACTCTATAAATAT
ATTGTTATATTTTAAGGGTATGAAACAAACAACTGCTGAATATTGGTTGA
TTAAAGAAGTCTCTGGCCTACAAAATTTTGGTGAAGAGGTGTTTGAAGGC
AGAACAACAAACGGTTCTTCARTATTGGTAGGAGTTGGACCACATGGTAT
TAGTTTGGAGCACCCAGATCAAGTTGATCATGAAAAACAAATGTAAATAT
TAGTAGTGGTCAAATTAATTGTTTAGAATGGCAAAAACATATCTTTTTAG
ACATTGTTTAATTCAATCCTTTTATTTTAAAACTTTTGTACTATTTGAAT
TTAATTTTTTTTATTAATATTATTAAATATAATTTTTAGGATTCCTTATA
CCGYGATCCGCAGTGCTGCCAGCCATCGTCGTGTATTTGAGATGTGGTAT
TTGGCAGGTGTTGAACATTCCGAAACACTATTTGTATTGAAATTAGAATC
TAGCCTGGGTGCAAATACTCTATATAGAGCACTTACGGAAAAACATGCAT
TCTATAGTTGTGAAACGGTCAGAGGGGCTGTTACATCACAATATATCAGG
GATCTCAAGGTAAATATCATATTATTTTMATCATGAAAAATGTTCAGTGA
ATTTACCAAATTAAAAAATATTTGCACGTGTAAATATTTTTATCATCATA
ATTTTCTATACATTTTGCCTCCTAAATTTGAAACTATTAATTAATGAAAG
TGTTCAATCAAATGCAATTTTATCAAAGATATTCCAATATTCTCTTATAT
ATAGTTGATCTATGATAATTTTTAACTGTAATAATGTATTAAAAACTGTT
GTTAATATAATAGGTTTATTTTCAGGGTACAATTATATCTATATTTAATG
AAGATTCACCGTTAGGGAAGAAATATGTGTTCGACATACAGAGGACCTGC
CGTGAAGTGCATGATAATGCACGCCGTGCACTTTACGAAAAGCAAAACAA
AGTTACACCATCTAGCTCTTCAGTGGTACTGAGTTCACCTGAACCYGAGC
CAACAACTTCAMAGGATAGCTACAAATTGGCCAAGCTCATTGATGCACTT
ACATGTAGAATTTGCATGGATGCCACTATTGATCATGTATTTTTCCCATG
TGGCCATGTTATTGCATGTGGAACATGTGTTAAACGATGTGAAACTTGCC
CATTGTGTCGAGGTGCAATTGATGAATCTAGACATGTGTTTATTCCAACT
TTAGCTGACTTGCCTGGTCTTCATCATTGATGCTATAACCTAGTAAAGTA
TGTTCAAATCATGATGACTCGTAGAAGGTGTACTGTCGTCAAAATTGACC
TCAAAGCATGAACGTCTGTGATAATGCTAATATATAAAAACTTCCTATAC
TTTCATACTTATTTATTTTTGTTAAAACAATTTTTWTATAGTATTGATGT
AAAAAATGGAAAGGAAATTTCATTTGTATCATTTACATTTTGTTAATAAT
TCATTTAGTTTAAGGTAATATATTTTTAAGTATACTTTTTATAC back to topCoding sequence (CDS) from alignment at JOTR01000194:84899..86592- >rna7817 ID=rna7817|Name=XM_015512107.1|organism=Diuraphis noxia|type=CDS|length=807bp|location=Sequence derived from alignment at JOTR01000194:84899..86592- (Diuraphis noxia)
ATGAAAGGTATGAAACAAACAACTGCTGAATATTGGTTGATTAAAGAAGT
CTCTGGCCTACAAAATTTTGGTGAAGAGGTGTTTGAAGGCAGAACAACAA
ACGGTTCTTCARTATTGGTAGGAGTTGGACCACATGGTATTAGTTTGGAG
CACCCAGATCAAGTTGATCATGAAAAACAAATGATTCCTTATACCGYGAT
CCGCAGTGCTGCCAGCCATCGTCGTGTATTTGAGATGTGGTATTTGGCAG
GTGTTGAACATTCCGAAACACTATTTGTATTGAAATTAGAATCTAGCCTG
GGTGCAAATACTCTATATAGAGCACTTACGGAAAAACATGCATTCTATAG
TTGTGAAACGGTCAGAGGGGCTGTTACATCACAATATATCAGGGATCTCA
AGGGTACAATTATATCTATATTTAATGAAGATTCACCGTTAGGGAAGAAA
TATGTGTTCGACATACAGAGGACCTGCCGTGAAGTGCATGATAATGCACG
CCGTGCACTTTACGAAAAGCAAAACAAAGTTACACCATCTAGCTCTTCAG
TGGTACTGAGTTCACCTGAACCYGAGCCAACAACTTCAMAGGATAGCTAC
AAATTGGCCAAGCTCATTGATGCACTTACATGTAGAATTTGCATGGATGC
CACTATTGATCATGTATTTTTCCCATGTGGCCATGTTATTGCATGTGGAA
CATGTGTTAAACGATGTGAAACTTGCCCATTGTGTCGAGGTGCAATTGAT
GAATCTAGACATGTGTTTATTCCAACTTTAGCTGACTTGCCTGGTCTTCA
TCATTGA back to top
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