Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107164974 |
| Model evidence | Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | hyphally regulated cell wall protein 3-like, transcript variant X2 |
| Transcript id | XM_015513014.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107164974 |
| Genbank | XM_015513014.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107164974 | gene5863 | Diuraphis noxia | gene | JOTR01000234 413984..419376 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015368500.1 | cds8412 | Diuraphis noxia | CDS | JOTR01000234 417124..417472 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna8683 ID=rna8683|Name=XM_015513014.1|organism=Diuraphis noxia|type=mRNA|length=1437bp|location=Sequence derived from alignment at JOTR01000234:416934..419376+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
gcaatataatttaaagtaaaaagtttattttaagacaattataaatttgt
acagCGAAAAATATGCTAACGAACACTCAATCTACTTGGAATAATTATCC
AGCTTATAGTATAAATCACGTTCTAAAGGTAGTTGATAATGACAAAAGTT
TCAACGGCATCCAATAAATCGTTACATCTAACCGGAATAGGATTGGCAGT
CCAGgcgttttatataaatttaacactGGACACAGTGATGGGTGGTGATT
TTATTCAGCTAAAGCCTGCAGGGCCACCCATCATTAATCCCGCAGGAGTC
TGGAGCGTGGATCAAGTACCCCAGGGATATGCTACAGCTGGAAGTAATTT
GGCGTTAAACGGATTGCAAGCGTTACAGGCTTTCGGTGGAAACAAAATCG
ATGCCAATGGATATCGAGACCAAAATGGATTCTACCGAGACAATAACGGT
GCACTAAATGGATAYGATGTGGGCAATACTTATGGTGgtgTCAACGACCG
TGGAGTTACAAGTGTGGAAGGTGGAGCTTATGGTGGTATAAATGGACGGA
ACAAGGGACATCAAGTTGCTGGATTTAGCACTTCGTATCAAAAAAATGAA
AGTGGTAATAAAGctacatattatgatgatggTCTTGGACACGGTGGAGT
GATTCAATATGGTGCGAAAGATcaaagATTCAGAGACGGAGAAGGCAAGG
CATTTGGAGGGGGCTACCACGATTCGTCGGTGAAGACGAACGCAGTCGGT
CAACAAGGCCAGTATGGTAACGGGGACGGTTACCACGCCGCTGGCGGTCA
GACGGGCGACGCGGTAAACAATCARCTATACGGCACGCGGTCCGACAGCG
GCCCGGGCATCGTGGCCGGCACGCCGTTTTTGGTGTCCACCACCGACCCA
TTGCCACCGGTCGTCCATCTGCCGCCACAGTACGTGCAACAATCGCCGCA
GTACATCCCTCAGGCACCGCAGTACGTCCCACAGGCTCCGTATGTCCCGC
AGGCCCAATACGTCCCGCAGGCCCCGTACATCCCACAGGCACCATTCGCG
GCCCAGGCACCCGGTTTGTTCCAGAACAACATTCCGCAACTGCCGCCGAT
CATACAGCAGCAACCGGGATCGATACTTCCGCCGTACAACGTGCAATTGC
CCGCCTTATCGTTGTCCGCCCGCTCGCCGTCCGGGCAATACGTAGTGCCG
ATGCCACCGAAACTCTACGTGGACAAGCCAAACGCCACCACGGATGGTTG
AAAATTCGAATCCATTATTACAGTATATTCTTACGTTGttgtttattaat
acattattataagatattatgcgCGAGTCGGTGGTTATTCGTTTGGATTA
TTAATTTCCATTGGGTCTAAACATAATTATgatgactgtataatattata
tgggtacctactacctatatataatatacacctctGC back to topprotein sequence of XM_015513014.1 >rna8683 ID=rna8683|Name=XM_015513014.1|organism=Diuraphis noxia|type=polypeptide|length=371bp
MTKVSTASNKSLHLTGIGLAVQAFYINLTLDTVMGGDFIQLKPAGPPIIN
PAGVWSVDQVPQGYATAGSNLALNGLQALQAFGGNKIDANGYRDQNGFYR
DNNGALNGYDVGNTYGGVNDRGVTSVEGGAYGGINGRNKGHQVAGFSTSY
QKNESGNKATYYDDGLGHGGVIQYGAKDQRFRDGEGKAFGGGYHDSSVKT
NAVGQQGQYGNGDGYHAAGGQTGDAVNNQLYGTRSDSGPGIVAGTPFLVS
TTDPLPPVVHLPPQYVQQSPQYIPQAPQYVPQAPYVPQAQYVPQAPYIPQ
APFAAQAPGLFQNNIPQLPPIIQQQPGSILPPYNVQLPALSLSARSPSGQ
YVVPMPPKLYVDKPNATTDG. back to topmRNA from alignment at JOTR01000234:416934..419376+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8683 ID=rna8683|Name=XM_015513014.1|organism=Diuraphis noxia|type=mRNA|length=2443bp|location=Sequence derived from alignment at JOTR01000234:416934..419376+ (Diuraphis noxia)
gcaatataatttaaagtaaaaagtttattttaagacaattataaatttgt
acagCGAAAAATATGCTAACGAACACTCAATCTACTTGGAATAATTATCC
AGCTTATAGTATAAATCACGTTCTAAAGGTGACGTTAAAAACTCgaattt
agaaaatgtttaattaatattggttAACAGGTAGTTGATAATGACAAAAG
TTTCAACGGCATCCAATAAATCGTTACATCTAACCGGAATAGGATTGGCA
GTCCAGgcgttttatataaatttaacactGGACACAGTGATGGGTGGTGA
TTTTATTCAGCTAAAGCCTGCAGGGCCACCCATCATTAATCCCGCAGGAG
TCTGGAGCGTGGATCAAGTACCCCAGGGATATGCTACAGCTGGAAGTAAT
TTGGCGTTAAACGGATTGCAAGCGTTACAGGCTTTCGGTGGAAACAAAAT
CGATGCCAATGGATATCGAGACCAAAATGGATTCTACCGAGACAATAACG
GTGCACTAAATGGATAYGATGTGGGCAATACTTATGGTGGTAAGTGTTTA
TGAATATTGCAAatactaatacattttgtacGATCAATTTTAGCTCAATA
TATTGAACATACTCATTggtatgacgtataatattactGACGATaagagt
aaattaaattaaaggtgTCAACGACCGTGGAGTTACAAGTGTGGAAGGTG
GAGCTTATGGTGGTATAAATGGACGGAACAAGGGACATCAAGTTGCTGGA
TTTAGCACTTCGTATCAAAAAAATGAAAGTGGTAATAAAGctacatatta
tgatgatggTCTTGGACACGGTGGAGTGATTCAATATGGTGCGAAAGATc
aaaggtataatattagtaaacataagctataggtacattagtattaataa
agaatttatattaataaagatatttatCAACTATTGTTTTGGTACCTACA
CGtacagtgtattatattaaaataattaaacttattgtaccatatatgat
atataatagataGTAGGTACTGTGAGTCATATTCATTTYACATGATTATG
GTATGCGtggtatgaatatttttttcgtaaaatagacatttaaaatacat
tttatacctaattGATGTTCAAACAatggaataaaatttaaaaataacag
tcaAAACTTATTTAGGTGTATACTCGAATTATACaataacttatacattt
ataaaatgttttattgagaTTAACAgtaaattgttcataataataattag
ggttcAGATTTCAATGGATTTGCATCTTTTTAAGACTGCCTGACACTTTT
CTTTTAAAGTTTGTATGTTATGCATGTAGTTAAaattatgactttttttt
atttaattcacaaGGATAGgtacaccaatttttttttattagatagatTA
TATTGAAATAGTAATCATTGGATCGTGTtcacatcaataaaataattttt
agtgccatttttaggtaattttttatcgttttaatgcatttttaagggta
ttgatttatttttatgttttagaaattaaaatatccattcccaatattca
tataatatttcccacaaagatttttttgttatgattGCTTCGGTAATTTA
CACACTGCAACATAAGTTTTTCGAAGGACAATTTACCGAAGACTACATAA
GAGTAACACTactgattttgtaataattcaCAGATTCAGAGACGGAGAAG
GCAAGGCATTTGGAGGGGGCTACCACGATTCGTCGGTGAAGACGAACGCA
GTCGGTCAACAAGGCCAGTATGGTAACGGGGACGGTTACCACGCCGCTGG
CGGTCAGACGGGCGACGCGGTAAACAATCARCTATACGGCACGCGGTCCG
ACAGCGGCCCGGGCATCGTGGCCGGCACGCCGTTTTTGGTGTCCACCACC
GACCCATTGCCACCGGTCGTCCATCTGCCGCCACAGTACGTGCAACAATC
GCCGCAGTACATCCCTCAGGCACCGCAGTACGTCCCACAGGCTCCGTATG
TCCCGCAGGCCCAATACGTCCCGCAGGCCCCGTACATCCCACAGGCACCA
TTCGCGGCCCAGGCACCCGGTTTGTTCCAGAACAACATTCCGCAACTGCC
GCCGATCATACAGCAGCAACCGGGATCGATACTTCCGCCGTACAACGTGC
AATTGCCCGCCTTATCGTTGTCCGCCCGCTCGCCGTCCGGGCAATACGTA
GTGCCGATGCCACCGAAACTCTACGTGGACAAGCCAAACGCCACCACGGA
TGGTTGAAAATTCGAATCCATTATTACAGTATATTCTTACGTTGttgttt
attaatacattattataagatattatgcgCGAGTCGGTGGTTATTCGTTT
GGATTATTAATTTCCATTGGGTCTAAACATAATTATgatgactgtataat
attatatgggtacctactacctatatataatatacacctctGC back to topCoding sequence (CDS) from alignment at JOTR01000234:416934..419376+ >rna8683 ID=rna8683|Name=XM_015513014.1|organism=Diuraphis noxia|type=CDS|length=1113bp|location=Sequence derived from alignment at JOTR01000234:416934..419376+ (Diuraphis noxia)
ATGACAAAAGTTTCAACGGCATCCAATAAATCGTTACATCTAACCGGAAT
AGGATTGGCAGTCCAGgcgttttatataaatttaacactGGACACAGTGA
TGGGTGGTGATTTTATTCAGCTAAAGCCTGCAGGGCCACCCATCATTAAT
CCCGCAGGAGTCTGGAGCGTGGATCAAGTACCCCAGGGATATGCTACAGC
TGGAAGTAATTTGGCGTTAAACGGATTGCAAGCGTTACAGGCTTTCGGTG
GAAACAAAATCGATGCCAATGGATATCGAGACCAAAATGGATTCTACCGA
GACAATAACGGTGCACTAAATGGATAYGATGTGGGCAATACTTATGGTGg
tgTCAACGACCGTGGAGTTACAAGTGTGGAAGGTGGAGCTTATGGTGGTA
TAAATGGACGGAACAAGGGACATCAAGTTGCTGGATTTAGCACTTCGTAT
CAAAAAAATGAAAGTGGTAATAAAGctacatattatgatgatggTCTTGG
ACACGGTGGAGTGATTCAATATGGTGCGAAAGATcaaagATTCAGAGACG
GAGAAGGCAAGGCATTTGGAGGGGGCTACCACGATTCGTCGGTGAAGACG
AACGCAGTCGGTCAACAAGGCCAGTATGGTAACGGGGACGGTTACCACGC
CGCTGGCGGTCAGACGGGCGACGCGGTAAACAATCARCTATACGGCACGC
GGTCCGACAGCGGCCCGGGCATCGTGGCCGGCACGCCGTTTTTGGTGTCC
ACCACCGACCCATTGCCACCGGTCGTCCATCTGCCGCCACAGTACGTGCA
ACAATCGCCGCAGTACATCCCTCAGGCACCGCAGTACGTCCCACAGGCTC
CGTATGTCCCGCAGGCCCAATACGTCCCGCAGGCCCCGTACATCCCACAG
GCACCATTCGCGGCCCAGGCACCCGGTTTGTTCCAGAACAACATTCCGCA
ACTGCCGCCGATCATACAGCAGCAACCGGGATCGATACTTCCGCCGTACA
ACGTGCAATTGCCCGCCTTATCGTTGTCCGCCCGCTCGCCGTCCGGGCAA
TACGTAGTGCCGATGCCACCGAAACTCTACGTGGACAAGCCAAACGCCAC
CACGGATGGTTGA back to top
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