Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107164981 |
| Model evidence | Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | NADH-ubiquinone oxidoreductase subunit 8 |
| Transcript id | XM_015513023.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107164981 |
| Genbank | XM_015513023.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107164981 | gene5874 | Diuraphis noxia | gene | JOTR01000235 209499..212840 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015368509.1 | cds8425 | Diuraphis noxia | CDS | JOTR01000235 212733..212760 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna8695 ID=rna8695|Name=XM_015513023.1|organism=Diuraphis noxia|type=mRNA|length=772bp|location=Sequence derived from alignment at JOTR01000235:209499..212840- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
AAAGTTTATATTTCATTATTTTATTTACTGACGACTCGACAGTATTTATA
CGTATAAATATTTTTTATAAGATTTTCAGTATGAATTTAGCAATATTAAC
CAGGGCTGGTAATACAGTTTTGCGATCATCTACTCGGGTTAGGGTACCAC
TTAGATTGGCATCGCAAATCAATTATGTAAACGTCAACAGAGATGATGAA
TTTGAAAATATAAGTTGGGGAGCCATGACAGATCAAGCTATTTCCTATGC
ATTTGTTACTGAATTATGTAGAGGTGCTGCTGTATCATTGGCTCATTTTT
TCAAGGAACCAGCCACTATCAACTATCCATTTGAGAAGGGACCCTTGTCA
CCACGTTTCCGAGGAGAACATGCTCTTAGACGTTACCCATCTGGCGAAGA
GAGGTGCATTGCTTGTAAACTGTGTGAAGCTATATGTCCAGCCCAAGCTA
TCACAATCGAAGCAGAAGAAAGAGCTGATGGAAGTCGCCGTACAACTCGT
TATGATATTGATATGACTAAATGTATATACTGTGGTTTTTGCCAAGAAGC
ATGTCCCGTAGATGCTATTGTTGAAGGTCCAAATTTTGAATACTCTACTG
AAACTCATGAAGAACTTTTATATAATAAGGAAAAGTTATTAAATAATGGT
GATAAATGGGAATCAGAAATTGCTGCTAACATACATGCTGATCATCTATA
CCGTTAATACTAATAATCAAAATAGTAAATATATGTGTTTAGTTTTCTTC
ATTATAAAAACAATATGTATTA back to topprotein sequence of XM_015513023.1 >rna8695 ID=rna8695|Name=XM_015513023.1|organism=Diuraphis noxia|type=polypeptide|length=209bp
MNLAILTRAGNTVLRSSTRVRVPLRLASQINYVNVNRDDEFENISWGAMT
DQAISYAFVTELCRGAAVSLAHFFKEPATINYPFEKGPLSPRFRGEHALR
RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIY
CGFCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLNNGDKWESEIAAN
IHADHLYR. back to topmRNA from alignment at JOTR01000235:209499..212840- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8695 ID=rna8695|Name=XM_015513023.1|organism=Diuraphis noxia|type=mRNA|length=3342bp|location=Sequence derived from alignment at JOTR01000235:209499..212840- (Diuraphis noxia)
AAAGTTTATATTTCATTATTTTATTTACTGACGACTCGACAGTATTTATA
CGTATAAATATTTTTTATAAGATTTTCAGTATGAATTTAGCAATATTAAC
CAGGGCTGGTAAGAATTCATAGTTTTATTTTTTATTATAAAAATGTAAAT
TGAAATAGGTGAATTCGTGAATTTCAATGATAAAACTCAAAACTACATGT
AACCAAAAATTATTTTCGGTATAATTGCAGTTTAGCTCTCTAGCGATTTT
TTTTTTATTGAAACATGTATTTCAACGAGTTACCGGAGCCGGTAGGCAAA
GGAAGCCACTTTACTTGATAATTTTGTTATTTAACTCTTAGCTCTGTTTT
TACCTTGAAATTTAAGTAAAACCATTTGAATGCGAGAGTACTTCATGATA
CTCATCACAGAATCTACCTAGTTAATTTAATTATAATCCTAAAAAAAAAA
AATTAAAACGTAATACGCATGCAGCGTGCGATAAAAATAATGTAAAAACA
CATACTTTGAAAGGCTATAACTTTCAAAATAATGGTTTGCACCAACTAAT
TTTTGCACCATCGTTCTTAACTCGTTGAAATACATATATTTCAATAAAAA
AAATCAAAAAAAAATCGTTTGGGAGCTGAACTGCAATTGTTCTTTATTTT
CTTATATGAATTTAAGTAAAATTATTCAATAAATATAAAAAACATCTTAA
ATTATAAATATTAATTTAACTTAAAATAAAGGTTTATTGTGTAAAGATTA
TGTACCAGTTGACCTGTTTTACCTTACCATTTATTATATTTTCATTATGT
TCATTGTTGTTTCAGGTAATACAGTTTTGCGATCATCTACTCGGGTTAGG
GTACCACTTAGATTGGCATCGCAAATCAATTATGTAAACGTCAACAGAGA
TGATGAATTTGAAAATATAAGTTGGGGAGCCATGACAGATCAAGCTATTT
CCTATGCATTTGTTACTGAATTATGTAGAGGTAACTATAACTAACTCTTG
TAAATTATTATGAGAATATAGGTTCTAAGGGTAAAATTTCTATCATTAAA
AGTTTATTTAAATTAATTGCAATATACGTATAGGTACAAAAATTAATTAT
ACCTACACGTTGCAGCGCTCCAATACAAATAAATGGATATATCATACCTA
TATATAAATTATATATTATAATTTGAAATTATAAATATCATGTAATATCT
TTCATATTTTTTCGTGATATGTATGAATTTATTAAATAGATGTAATAATG
TAACGTATATGTACTTAATACATAGTATGAGGACTTTAAATCAATAACGT
AATATATGCTAAGAATTTGTTTTTGAGTTATTTAATATTTTGAAAAATCA
AAAGTAAATTGTAAACAATATATTTCAATGAAAATGTAAACTTATATTCA
TCACTACTTGTGGAAAATTAAGTTAAATTTCCCTTTTGTTAAGACAAAAA
AATCTAACATTAAATAAATGCTAGAATATTGTAAGAGTATGTCAGAGCAC
TATTTTTTTTTCTTTTTCAGACCTGCACACAGCATAGCAAATTTGCATTT
AACATACCCAACCCCACGTTATTATTTTCAGGCACAGGCCTATGCCTGAG
GTGGCATTTCTTTGGTTGTAGGCAGGGCCATATTTTGGGTAATATGTTGA
TACATATACTACAAAAACGAAAGGGCGGCAAATTTTGATTTGCCTATGTA
TACATTTTGTCTAGAGCCAGCCTTAATTATTTTTAGTATTAGAGTGAATT
CAACTTATTATAAAACTTTAAGTTAAAATGGCGTGCTGATATCTCCTTCA
GTTGCTGCAGTATATCAATAATATGTGCCAAGTGCCAAAGAAATAAAATT
CAAGATTTTTTTAAACGTTTACCATGAAAATTAAACAAATCTTATTTTCT
CTTAATTTATAATATCTATTTATTTTAAAGTTTAATTTGTAAAAAAAAAT
ATTGAAGTATATAACAGTAATTTATTAATGCATTGTTGAAAAAATAGTAT
ATGTGTATTGTGTACAATATATACGTATTTACCTTTTTAATCAGATCATA
GTACTATCTATTATTTCATATTTGCAAATATTATTATGTATATTAACTTT
ACCTACTTATTTTAAGCTTATATATTATGTGCATATGTACTATACATAAA
TTGTTCATAAGGATTTAACGTTATAATAAATGAACTTACTCTGTTTTAAT
AAATGATGATGATGTCACTCTTATAAGATATTATAAATCGTGGCTATGAT
TACTCTAATATTAAATAGTATTAAAAATATTTCCCAGTATCCAAATTTTT
ATGTTTTCGAACTAGGTGTGTTCCAATTAGTTTAAATAATTGAGATTCTA
CTGGCGACGCATATTTGGATTTTATACTTGAATTACAGGCAATGGTGAAT
TATGTCCCTTTGATGGGGTACAAGATTTAACTTGTAAATTCGGTCTTCTG
TACCTTAAACACTTGCAATATAGAGTAAAATTTCTGAAATAATTTTTGAT
TTTGCTGCATATGTGTCAATCATAGACAACAGAGCATTTACATAGTTGCA
GTCAATCAGTGTAGGGTTTTAGGTACCCCTATGACCTATTTTAATATTTA
TGATTTTATAACCACATAAATTATATTTTAATTGATCAAATAGTGCATGT
CAAAAAAATCAGCCTTCCCTCCTGAGAAAAGACTAAAATAATTTATTTTT
AGGTGCTGCTGTATCATTGGCTCATTTTTTCAAGGAACCAGCCACTATCA
ACTATCCATTTGAGAAGGGACCCTTGTCACCACGTTTCCGAGGAGAACAT
GCTCTTAGACGTTACCCATCTGGCGAAGAGAGGTGCATTGCTTGTAAACT
GTGTGAAGCTATATGTCCAGCCCAAGTAAAATTATTGTCATAATTATTAA
TGACATATTTTTTGTATGTATGTATTATGATTGTTATGTATGTTTTGCAT
AGGCTATCACAATCGAAGCAGAAGAAAGAGCTGATGGAAGTCGCCGTACA
ACTCGTTATGATATTGATATGACTAAATGTATATACTGTGGTTTTTGCCA
AGAAGCATGTCCCGTAGATGCTATTGTTGAAGTAAAGTTTAATACAGTAA
TAATTTCATCAAACCATAGCTTATTATGTGGATACATTTTTTCAGGGTCC
AAATTTTGAATACTCTACTGAAACTCATGAAGAACTTTTATATAATAAGG
AAAAGTTATTAAATAATGGTGATAAATGGGAATCAGAAATTGCTGCTAAC
ATACATGCTGATCATCTATACCGTTAATACTAATAATCAAAATAGTAAAT
ATATGTGTTTAGTTTTCTTCATTATAAAAACAATATGTATTA back to topCoding sequence (CDS) from alignment at JOTR01000235:209499..212840- >rna8695 ID=rna8695|Name=XM_015513023.1|organism=Diuraphis noxia|type=CDS|length=627bp|location=Sequence derived from alignment at JOTR01000235:209499..212840- (Diuraphis noxia)
ATGAATTTAGCAATATTAACCAGGGCTGGTAATACAGTTTTGCGATCATC
TACTCGGGTTAGGGTACCACTTAGATTGGCATCGCAAATCAATTATGTAA
ACGTCAACAGAGATGATGAATTTGAAAATATAAGTTGGGGAGCCATGACA
GATCAAGCTATTTCCTATGCATTTGTTACTGAATTATGTAGAGGTGCTGC
TGTATCATTGGCTCATTTTTTCAAGGAACCAGCCACTATCAACTATCCAT
TTGAGAAGGGACCCTTGTCACCACGTTTCCGAGGAGAACATGCTCTTAGA
CGTTACCCATCTGGCGAAGAGAGGTGCATTGCTTGTAAACTGTGTGAAGC
TATATGTCCAGCCCAAGCTATCACAATCGAAGCAGAAGAAAGAGCTGATG
GAAGTCGCCGTACAACTCGTTATGATATTGATATGACTAAATGTATATAC
TGTGGTTTTTGCCAAGAAGCATGTCCCGTAGATGCTATTGTTGAAGGTCC
AAATTTTGAATACTCTACTGAAACTCATGAAGAACTTTTATATAATAAGG
AAAAGTTATTAAATAATGGTGATAAATGGGAATCAGAAATTGCTGCTAAC
ATACATGCTGATCATCTATACCGTTAA back to top
|