Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107164988 |
| Model evidence | Supporting evidence includes similarity to: 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | protein TAPT1 homolog |
| Transcript id | XM_015513032.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107164988 |
| Genbank | XM_015513032.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107164988 | gene5879 | Diuraphis noxia | gene | JOTR01000235 322201..325926 - |
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015368518.1 | cds8434 | Diuraphis noxia | CDS | JOTR01000235 325884..325926 - |
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna8704 ID=rna8704|Name=XM_015513032.1|organism=Diuraphis noxia|type=mRNA|length=1974bp|location=Sequence derived from alignment at JOTR01000235:322201..325926- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCAAAGTCGAGAGCGCCACTAAGAATTCGAACAACCCTGGCTCTTT
GTGGGAATTTATTAGTGTAGAATTTAAACGTGGTTATTCTCTAGAAAATG
ATGAAAAAGAATTTTCAGACAGGAGAGAAAAAGTGTATACTTTTATGAAA
ATACCTTTAGAAGTAGAACGGTTCATGTTCTATGGATTTTGTCAGTGTGC
AGATTCATTCCTATTTGTCTATACATTCCTACCATTAAGGGCGTTAGTAG
CATTAAAATCATTAATCTATAATTCCTTCACAAAATTTAAGGACAAACAT
AAAAAGAAACGTTTAACTGCAGCGGAGACATGTGACTTATTAAAGATGGC
TGTACTAATAACATGTTCATTGATGTTATTACCGTGGGATACGTCAATGA
TGTATCATGTAATAAAAAGCCAATCGGTTATTAAGTTGTATATATTTTTT
AATATGTTAGAGGTCGGAGATAGATTATTTTCATCATTTGGTCAAGACAT
TTTAGATGCATTATTTTGGACTGCTACTGAACCTAAGACTAGCCGTCGTG
AACACTTTGGGGTTTTACCACATTTTATTATTGCTGTATTTTATGTCTTT
TTGCACGGTATACTAGTATTATGCCAAGCTACTACATTGAATGTCGCCAT
TAATTCTAGTCACAAGGCATTACTAGCAATCATGATGTCCAATAATTTTG
TAGAGCTGAAGGGAAGTGTGTTCAAAAAGTTTGACAAAACAAACTTATTT
CAATTATCGTGCAGTGATGTCCGTGAACGATTTCATCTGTTCATATTATT
ACTAATAGTTGTAGTGCAAACAATGAAAGAATACCAATGGACTAGTGAAT
CATTTTGGGAGTTAATGCTTGATTGCATGTATGTTATGGTATCGGAAATG
TTAATTGATTGGACCAAACATGCATTCATTACTAGGTTCAATGAAATAAA
CTTGTCAGTTTACAGTGACTATGTATTGAGCTTTGCTTATGACACTGCAC
AGTCACGTCATAAAAAGGCGTTCACTGATCACTCTGATTTAGTAGCAAGG
CGAATGGGCTTTATCCCAATTCCGCTAGGAGTAGTGATAATTAAGGTTCT
AACTAGATGTGTGTCAATTGATGGGAGACTAGCTTCCATAATTCTATTAT
TTTTCACATTTACATGTCTAGTCACATTGAAAATTGTTAATCTTGTCTAT
ATATTAGGAAGAGCTTGCAAGTTAATAGACCTCCACAAAACGTCTTTAAT
AAAAAATCATCACATCAAAAATGGCATAAGCTGTCAAGATATGGCAACTA
GTCCAATGAGACCACCAATCCGTAAAAAGCCGTCTTGGAATGACAACAAA
GAAAATAAACCTTCGCCACTGATTGAAGTACCACCATTAGGGCCTACACC
AATGTTTGCTAATAGTAATGTTGATATAAAGGAGGCATGTCTTAATACAC
AAATATTAGAAGACATTTTGGAATCTGATTTGACTCATAGTGACTCTGAT
ATAAATTTATCTATATCTACAGTTCGCGATGCTGATACGCTGAGTACAAA
ATCAGCTTGAACAACAATCATTAGAATATATAAATAACAATTTTTTTTTT
TTCATACAAGGAGTTATGTGTTAAATAAGACTGCAAAAGGGAATATTATT
ATATTTAAACTATTATTAAAAAGCGATTACTCAACAAATCCTACAAATTG
TATTTATTATAACATTGTTATGACATGGTATCCATAGCAACTTATTATAT
TGTTACCATGTACATTTGTGATGGCCATGTTTCTGTAATGCTCTATTATA
TTTTATAAGGTTGATACCCTTTGAATACTATGTTTTGATTTGTATTGTTT
TACTGTTATATTGTTGTTAATTTGTTTGTCTTAATTTAATTAAAATGTCA
AAAATTGCTGATGGTAACTACACTACAGTTATTTACACATTGGTAAATCT
TAAAATAAAATTATAAAAAAAGTT back to topprotein sequence of XM_015513032.1 >rna8704 ID=rna8704|Name=XM_015513032.1|organism=Diuraphis noxia|type=polypeptide|length=520bp
MGKVESATKNSNNPGSLWEFISVEFKRGYSLENDEKEFSDRREKVYTFMK
IPLEVERFMFYGFCQCADSFLFVYTFLPLRALVALKSLIYNSFTKFKDKH
KKKRLTAAETCDLLKMAVLITCSLMLLPWDTSMMYHVIKSQSVIKLYIFF
NMLEVGDRLFSSFGQDILDALFWTATEPKTSRREHFGVLPHFIIAVFYVF
LHGILVLCQATTLNVAINSSHKALLAIMMSNNFVELKGSVFKKFDKTNLF
QLSCSDVRERFHLFILLLIVVVQTMKEYQWTSESFWELMLDCMYVMVSEM
LIDWTKHAFITRFNEINLSVYSDYVLSFAYDTAQSRHKKAFTDHSDLVAR
RMGFIPIPLGVVIIKVLTRCVSIDGRLASIILLFFTFTCLVTLKIVNLVY
ILGRACKLIDLHKTSLIKNHHIKNGISCQDMATSPMRPPIRKKPSWNDNK
ENKPSPLIEVPPLGPTPMFANSNVDIKEACLNTQILEDILESDLTHSDSD
INLSISTVRDADTLSTKSA. back to topmRNA from alignment at JOTR01000235:322201..325926- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna8704 ID=rna8704|Name=XM_015513032.1|organism=Diuraphis noxia|type=mRNA|length=3726bp|location=Sequence derived from alignment at JOTR01000235:322201..325926- (Diuraphis noxia)
ATGGGCAAAGTCGAGAGCGCCACTAAGAATTCGAACAACCCTGGTACGTA
TTCGCCCTCCACTCATCCTCTCCTCTTAACAGCACTAACTTGTTATTCTC
TTCAGTATTTTGCAATTTACTATACTACTTCTCCCCCCCCCCACTTATTA
ATAAATAGCCGGTCCCTGTGACATCTTTTAGTGCTATAATGTAAGTCTAC
TGAATAGGTACTAAAAAATCAGTAAAAGAGTTTACAACCTCACTCGTACA
CTTACAAATTGTGGTTGTTATAAATTTGACAGTAATTGTGGTAATATTTG
AAGTTATTATTATTATATTTTTGACATTTTTTTCTCCACCTGTTGAAATC
TTAATTATTATATACTGAATAAAGTACAGTTCAGTTTAAAATTTTCATTA
TTATCTCGCCTAATTGCTTGGGACCATCCAATTCTTCCGTCTGAGTTTCT
GACTTTATGGGGTTCACATTCATTATGTATTTGATTTGGGACCAAAGAAA
CTGTCAGCTTTACCCTGGGGTTTCCATATTGCAGAAGTTTCTTCTTACCA
AAGTGTTATTCTACTTGCAAATTTATTTTTGTTATTAACTTGAATGTTAA
TACTATTAATATTTATTACTGTTTTTGTAATAAATTTGATATTTTTATGC
TATACTTAAACATTATTCACTTTTACCTTTAGCTTGGCTTACTTACTTAT
TTTTTATTTTTATTTTATTTTTAGGCTCTTTGTGGGAATTTATTAGTGTA
GAATTTAAACGTGGTTATTCTCTAGAAAATGATGAAAAAGAATTTTCAGA
CAGGAGAGAAAAAGTGTATACTTTTATGAAAATACCTTTAGAAGTAGAAC
GGTTCATGTTCTATGGATTTTGTCAGGTGCGCAAGCCTTTATAAGTATTT
TATTATAATTAAACATTTGTATAACATATTATATAGCTTTCTATACTCTG
TCTCAAAAGAGAAAAAACCTGTTGACCAACTTATTGACGTTGGTGTTATG
CATTTTTCACCATCTACCTGGTATTAGCGTGATTATGTGGTTCTCTATTT
CTTGATTGTTAGCTTTTAAGACAGAGTATAGGTAGATATTCTATAGATTT
AACTTAATTGTGTTATAATTTCAGTGTGCAGATTCATTCCTATTTGTCTA
TACATTCCTACCATTAAGGGCGTTAGTAGCATTAAAATCATTAATCTATA
ATTCCTTCACAAAATTTAAGTAAGTATTCTTCAACCTATCACAACTATTT
GAAATGTATTTTATATTTTTTTTAGGGACAAACATAAAAAGAAACGTTTA
ACTGCAGCGGAGACATGTGACTTATTAAAGATGGCTGTACTAATAACATG
TTCATTGATGTTATTACCGTGGGATACGTCAATGATGTATCATGTAATAA
AAAGCCAATCGGTTATTAAGTTGTATATATTTTTTAATATGTTAGAGGTA
ATTATAAAATATCTATTAGTTTACCACATTTTATTTGTGAATTTAAAATT
TGTAATATTTTACAACTTAAGGTCGGAGATAGATTATTTTCATCATTTGG
TCAAGACATTTTAGATGCATTATTTTGGACTGCTACTGAACCTAAGACTA
GCCGTCGTGAACACTTTGGGGTTTTACCACATTTTATTATTGCTGTATTT
TATGTCTGTATCCTTTAAAAAAATACCTCAGTTATTTTGATATAATATAC
TCAGCACAGTAAGAGTACTAAATCAAATTTTAAATTTTCCTTGACATACA
ATATCAGTTTTGCACGGTATACTAGTATTATGCCAAGCTACTACATTGAA
TGTCGCCATTAATTCTAGTCACAAGGCATTACTAGCAATCATGATGTCCA
ATAATGTAATGTGAAAAATTGTAAAACAATTTTTTTCATATTTTATTGTG
AGTGCAATATTATAACTATGTACTTATTTTGATTATTACTAGTTTGTAGA
GCTGAAGGGAAGTGTGTTCAAAAAGTTTGACAAAACAAACTTATTTCAAT
TATCGTGCAGTGATGTCCGTGAACGATTTCATCTGTTCATATTATTACTA
ATAGTTGTAGTGCAAACAATGAAAGAATACCAATGGACTAGTGGTTTGTA
TTTAATAATTATTTCACTATTAACAGATTTAAGCTTAATATTTGTGAAGA
AAAATTGACTTTCCAAACTAGTTAAATTGTTTTTATATGATAAAACCAAA
TTAAGCAATATTATGTTTTTATTTTATTTGTTGTGTTTATCTGTAAAATA
ATATTTTAGATTAAGATTTTTTTTCTTTAATTTACATTTATTTTCTGGTA
ATTTTTTCAAATATTTTATTTTATTATATTCTTTCACTGTTTCAGAATCA
TTTTGGGAGTTAATGCTTGATTGCATGTATGTTATGGTATCGGAAATGTT
AATTGATTGGACCAAACATGCATTCATTACTAGGTTCAATGAAATAAACT
TGTCAGTTTACAGTGACTATGTATTGAGCTTTGCTTATGACACTGCACAG
TCACGTCATAAAAAGGTTACTTAATTAGTCAAATTGTTGAATTGATTTTT
AGTTAAACCATTTTGTCTTACAGGCGTTCACTGATCACTCTGATTTAGTA
GCAAGGCGAATGGGCTTTATCCCAATTCCGCTAGGAGTAGTGATAATTAA
GGTTCTAACTAGATGTGTGTCAATTGATGGGAGACTAGCTTCCATAATTC
TATTATTTTTCACATTTACATGTCTAGTCACATTGAAAATTGTTAATCTT
GTCTATATATTAGGAAGAGCTTGCAAGTTAATAGACCTCCACAAAACGGT
TTGTGAAAATATTGCAAATTTGCATCATAACTCCTTTAATTCATGCATTA
TAATTAATATTATTTTATTTTTAGTCTTTAATAAAAAATCATCACATCAA
AAATGGCATAAGCTGTCAAGATATGGCAACTAGTCCAATGAGACCACCAA
TCCGTAAAAAGCCGTCTTGGAATGACAACAAAGAAAATAAACCTTCGCCA
CTGATTGAAGTACCACCATTAGGGCCTACACCAATGTTTGCTAATAGTAA
TGTTAGTATTAGCATAAACAACAATAATTTATAAAAAGATTATTATTATT
TATTACTTATATCCCATTACCTACCTAGCAAGTTTTAATTATGTATTTTA
TTTATTTTATATAATCAATAGGTTGATATAAAGGAGGCATGTCTTAATAC
ACAAATATTAGAAGACATTTTGGAATCTGATTTGACTCATAGTGACTCTG
ATATAAATTTATCTATATCTACAGTTCGCGATGCTGATACGCTGAGTACA
AAATCAGCTTGAACAACAATCATTAGAATATATAAATAACAATTTTTTTT
TTTTCATACAAGGAGTTATGTGTTAAATAAGACTGCAAAAGGGAATATTA
TTATATTTAAACTATTATTAAAAAGCGATTACTCAACAAATCCTACAAAT
TGTATTTATTATAACATTGTTATGACATGGTATCCATAGCAACTTATTAT
ATTGTTACCATGTACATTTGTGATGGCCATGTTTCTGTAATGCTCTATTA
TATTTTATAAGGTTGATACCCTTTGAATACTATGTTTTGATTTGTATTGT
TTTACTGTTATATTGTTGTTAATTTGTTTGTCTTAATTTAATTAAAATGT
CAAAAATTGCTGATGGTAACTACACTACAGTTATTTACACATTGGTAAAT
CTTAAAATAAAATTATAAAAAAAGTT back to topCoding sequence (CDS) from alignment at JOTR01000235:322201..325926- >rna8704 ID=rna8704|Name=XM_015513032.1|organism=Diuraphis noxia|type=CDS|length=1560bp|location=Sequence derived from alignment at JOTR01000235:322201..325926- (Diuraphis noxia)
ATGGGCAAAGTCGAGAGCGCCACTAAGAATTCGAACAACCCTGGCTCTTT
GTGGGAATTTATTAGTGTAGAATTTAAACGTGGTTATTCTCTAGAAAATG
ATGAAAAAGAATTTTCAGACAGGAGAGAAAAAGTGTATACTTTTATGAAA
ATACCTTTAGAAGTAGAACGGTTCATGTTCTATGGATTTTGTCAGTGTGC
AGATTCATTCCTATTTGTCTATACATTCCTACCATTAAGGGCGTTAGTAG
CATTAAAATCATTAATCTATAATTCCTTCACAAAATTTAAGGACAAACAT
AAAAAGAAACGTTTAACTGCAGCGGAGACATGTGACTTATTAAAGATGGC
TGTACTAATAACATGTTCATTGATGTTATTACCGTGGGATACGTCAATGA
TGTATCATGTAATAAAAAGCCAATCGGTTATTAAGTTGTATATATTTTTT
AATATGTTAGAGGTCGGAGATAGATTATTTTCATCATTTGGTCAAGACAT
TTTAGATGCATTATTTTGGACTGCTACTGAACCTAAGACTAGCCGTCGTG
AACACTTTGGGGTTTTACCACATTTTATTATTGCTGTATTTTATGTCTTT
TTGCACGGTATACTAGTATTATGCCAAGCTACTACATTGAATGTCGCCAT
TAATTCTAGTCACAAGGCATTACTAGCAATCATGATGTCCAATAATTTTG
TAGAGCTGAAGGGAAGTGTGTTCAAAAAGTTTGACAAAACAAACTTATTT
CAATTATCGTGCAGTGATGTCCGTGAACGATTTCATCTGTTCATATTATT
ACTAATAGTTGTAGTGCAAACAATGAAAGAATACCAATGGACTAGTGAAT
CATTTTGGGAGTTAATGCTTGATTGCATGTATGTTATGGTATCGGAAATG
TTAATTGATTGGACCAAACATGCATTCATTACTAGGTTCAATGAAATAAA
CTTGTCAGTTTACAGTGACTATGTATTGAGCTTTGCTTATGACACTGCAC
AGTCACGTCATAAAAAGGCGTTCACTGATCACTCTGATTTAGTAGCAAGG
CGAATGGGCTTTATCCCAATTCCGCTAGGAGTAGTGATAATTAAGGTTCT
AACTAGATGTGTGTCAATTGATGGGAGACTAGCTTCCATAATTCTATTAT
TTTTCACATTTACATGTCTAGTCACATTGAAAATTGTTAATCTTGTCTAT
ATATTAGGAAGAGCTTGCAAGTTAATAGACCTCCACAAAACGTCTTTAAT
AAAAAATCATCACATCAAAAATGGCATAAGCTGTCAAGATATGGCAACTA
GTCCAATGAGACCACCAATCCGTAAAAAGCCGTCTTGGAATGACAACAAA
GAAAATAAACCTTCGCCACTGATTGAAGTACCACCATTAGGGCCTACACC
AATGTTTGCTAATAGTAATGTTGATATAAAGGAGGCATGTCTTAATACAC
AAATATTAGAAGACATTTTGGAATCTGATTTGACTCATAGTGACTCTGAT
ATAAATTTATCTATATCTACAGTTCGCGATGCTGATACGCTGAGTACAAA
ATCAGCTTGA back to top
|