Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107165930 |
| Model evidence | Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments |
| Product | protein phosphatase 1 regulatory subunit 11-like |
| Transcript id | XM_015514367.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107165930 |
| Genbank | XM_015514367.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107165930 | gene6753 | Diuraphis noxia | gene | JOTR01000302 251057..252116 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| id88911 | id88911 | Diuraphis noxia | exon | JOTR01000302 251057..252116 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015369853.1 | cds9647 | Diuraphis noxia | CDS | JOTR01000302 251506..251844 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna9972 ID=rna9972|Name=XM_015514367.1|organism=Diuraphis noxia|type=mRNA|length=1060bp|location=Sequence derived from alignment at JOTR01000302:251057..252116+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TCGTGTATAATAGACCATGGCTTAAGATAATCTTAAGCCATCGTGGTATA
GTTAGTTAGTAGACTAGTGGAAAATGCCAAGTTGACGAATAATGATAACA
TGATTTTTGTAACGTCCgatttttgtttacataaaCCATGGTCTTAGAAG
CTgatatattatctacaaaacaataaaaccgAGCATAAAAACAATGATCA
GATAAATATCTATTCATttattcagtaataattattagatattttaatct
cTGAACTTTCCGTcttgtttattactttattatgcATTGagcaaatgttt
ttaaaacttcatACTTCATTGTTCATAgtcaattatcatatttaattacc
taGTTGTGTCATACAATTGATGGTTGTATTGATATAtagttacaaataaa
atttatcaactaatcttataatagtttgtagcttaaataactaaattaaa
tggAAGAAGCTAATATACCATTCCATAGTAGTACAACATTGGTGTTACGC
CCACAAACAAATGATGGTCAAGtagtacatttaaaattgaagaaaCCAAA
AAAAAGTCATAAACAGGTTAGTTGGGATGCACACACTGTTGACAATGAAC
ACTTGAACAAGAAAAAGAGCAAATGCTgttgtatttacaaaaaaccaaaa
aaatttgGTGAGCCCGATACAGATGAAAGCAACGAAAGTGGTGATGATGA
ATGTGCCAGTTGTATTgggaataaaaaaacacatcaacTGTATAAGCCTG
AGAACAAAAATGATGAACCTAAAGAAGACGaatgttaaaatacatataaa
tgtatcttTTCACTAAATGTAAACttgtatgtataaaactatttgacctt
aaattttccttttttatttttgtttagttcaACTACATCCAcctatttgt
ttgaatattaaYAGTTTTTTTATTMAATTTTTGTTGATATGCGATtgcat
ttgatttatttaaatttcattcattcattttaatatacagACACACCATT
TGTAAGTCAGTAACTTGTAACATgtgaattaaacaaatataaccaGAATC
ATCTAATGGA back to topprotein sequence of XM_015514367.1 >rna9972 ID=rna9972|Name=XM_015514367.1|organism=Diuraphis noxia|type=polypeptide|length=113bp
MEEANIPFHSSTTLVLRPQTNDGQVVHLKLKKPKKSHKQVSWDAHTVDNE
HLNKKKSKCCCIYKKPKKFGEPDTDESNESGDDECASCIGNKKTHQLYKP
ENKNDEPKEDEC. back to topmRNA from alignment at JOTR01000302:251057..252116+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9972 ID=rna9972|Name=XM_015514367.1|organism=Diuraphis noxia|type=mRNA|length=1060bp|location=Sequence derived from alignment at JOTR01000302:251057..252116+ (Diuraphis noxia)
TCGTGTATAATAGACCATGGCTTAAGATAATCTTAAGCCATCGTGGTATA
GTTAGTTAGTAGACTAGTGGAAAATGCCAAGTTGACGAATAATGATAACA
TGATTTTTGTAACGTCCgatttttgtttacataaaCCATGGTCTTAGAAG
CTgatatattatctacaaaacaataaaaccgAGCATAAAAACAATGATCA
GATAAATATCTATTCATttattcagtaataattattagatattttaatct
cTGAACTTTCCGTcttgtttattactttattatgcATTGagcaaatgttt
ttaaaacttcatACTTCATTGTTCATAgtcaattatcatatttaattacc
taGTTGTGTCATACAATTGATGGTTGTATTGATATAtagttacaaataaa
atttatcaactaatcttataatagtttgtagcttaaataactaaattaaa
tggAAGAAGCTAATATACCATTCCATAGTAGTACAACATTGGTGTTACGC
CCACAAACAAATGATGGTCAAGtagtacatttaaaattgaagaaaCCAAA
AAAAAGTCATAAACAGGTTAGTTGGGATGCACACACTGTTGACAATGAAC
ACTTGAACAAGAAAAAGAGCAAATGCTgttgtatttacaaaaaaccaaaa
aaatttgGTGAGCCCGATACAGATGAAAGCAACGAAAGTGGTGATGATGA
ATGTGCCAGTTGTATTgggaataaaaaaacacatcaacTGTATAAGCCTG
AGAACAAAAATGATGAACCTAAAGAAGACGaatgttaaaatacatataaa
tgtatcttTTCACTAAATGTAAACttgtatgtataaaactatttgacctt
aaattttccttttttatttttgtttagttcaACTACATCCAcctatttgt
ttgaatattaaYAGTTTTTTTATTMAATTTTTGTTGATATGCGATtgcat
ttgatttatttaaatttcattcattcattttaatatacagACACACCATT
TGTAAGTCAGTAACTTGTAACATgtgaattaaacaaatataaccaGAATC
ATCTAATGGA back to topCoding sequence (CDS) from alignment at JOTR01000302:251057..252116+ >rna9972 ID=rna9972|Name=XM_015514367.1|organism=Diuraphis noxia|type=CDS|length=339bp|location=Sequence derived from alignment at JOTR01000302:251057..252116+ (Diuraphis noxia)
atggAAGAAGCTAATATACCATTCCATAGTAGTACAACATTGGTGTTACG
CCCACAAACAAATGATGGTCAAGtagtacatttaaaattgaagaaaCCAA
AAAAAAGTCATAAACAGGTTAGTTGGGATGCACACACTGTTGACAATGAA
CACTTGAACAAGAAAAAGAGCAAATGCTgttgtatttacaaaaaaccaaa
aaaatttgGTGAGCCCGATACAGATGAAAGCAACGAAAGTGGTGATGATG
AATGTGCCAGTTGTATTgggaataaaaaaacacatcaacTGTATAAGCCT
GAGAACAAAAATGATGAACCTAAAGAAGACGaatgttaa back to top
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