jg10538.t1 (mRNA) Eriosoma lanigerum

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejg10538.t1
Unique Namejg10538.t1
TypemRNA
OrganismEriosoma lanigerum (Woolly apple aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6contigscaffold_6:29556831..29557505 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Eriosoma lanigerum OGS1.02020-07-06 .483843
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jg10538jg10538Eriosoma lanigerumgenescaffold_6 29556831..29557505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10538.t1jg10538.p1Eriosoma lanigerumpolypeptidescaffold_6 29556831..29557505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10538.t1.CDS1jg10538.t1.CDS1Eriosoma lanigerumCDSscaffold_6 29556831..29556896 -
jg10538.t1.CDS2jg10538.t1.CDS2Eriosoma lanigerumCDSscaffold_6 29556960..29557505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
jg10538.t1.exon1jg10538.t1.exon1Eriosoma lanigerumexonscaffold_6 29556831..29556896 -
jg10538.t1.exon2jg10538.t1.exon2Eriosoma lanigerumexonscaffold_6 29556960..29557505 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>jg10538.t1 ID=jg10538.t1|Name=jg10538.t1|organism=Eriosoma lanigerum|type=mRNA|length=612bp|location=Sequence derived from alignment at scaffold_6:29556831..29557505- (Eriosoma lanigerum)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTTTGAACGATATTCAATTTTTAAGAAAGTTATATGAGTATTC
TGAAATTAACAAAACTATAGCTGAAGCCACAATTGGAAAATTTGTGAATC
ATTTGTACTATTTAAATGAAGAATGTTTAACTTTTGCATTGTTCGATAAA
CGAGTAGACAGTGCAACAAAATTATTAATGATTAACAATATACTAAAAGA
CGAAGGAGAAGAAGATGAAAATGAAGAAATGAGTAACGAAATTCCCAAAA
AATTAGTATTAAAAAAATCTGACGTTCCGTTGTTTTTAAACGATGATAAT
AATACAATTTTAGTAAAATTTATTGGAAAAAAGTCACGAAAATTATTCAA
AAGATTCAAAATAAATAGCGATTTTTTAGAAACTCATCCGGACACTTGGA
ATATTTCGAATGACTATAAAAAAGGTGAAGAAATAATACAGAAATTAAAA
GTTGTAAACGATCCTGCAGAAAGAGGAATTAAACTTATTGAAGAATTTGA
TAAAAAAAATAACAAAAACGAAGAACAAAAACAATTTCTATTGCAGACCA
TTCAAGATTATCGGCAGAAATATCCTAAACCAACATTAGATATTATGAAG
AAGTCGTTTTAA
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protein sequence of jg10538.t1

>jg10538.p1 ID=jg10538.p1|Name=jg10538.t1|organism=Eriosoma lanigerum|type=polypeptide|length=204bp
MAPLNDIQFLRKLYEYSEINKTIAEATIGKFVNHLYYLNEECLTFALFDK
RVDSATKLLMINNILKDEGEEDENEEMSNEIPKKLVLKKSDVPLFLNDDN
NTILVKFIGKKSRKLFKRFKINSDFLETHPDTWNISNDYKKGEEIIQKLK
VVNDPAERGIKLIEEFDKKNNKNEEQKQFLLQTIQDYRQKYPKPTLDIMK
KSF*
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mRNA from alignment at scaffold_6:29556831..29557505-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>jg10538.t1 ID=jg10538.t1|Name=jg10538.t1|organism=Eriosoma lanigerum|type=mRNA|length=675bp|location=Sequence derived from alignment at scaffold_6:29556831..29557505- (Eriosoma lanigerum)
ATGGCTCCTTTGAACGATATTCAATTTTTAAGAAAGTTATATGAGTATTC
TGAAATTAACAAAACTATAGCTGAAGCCACAATTGGAAAATTTGTGAATC
ATTTGTACTATTTAAATGAAGAATGTTTAACTTTTGCATTGTTCGATAAA
CGAGTAGACAGTGCAACAAAATTATTAATGATTAACAATATACTAAAAGA
CGAAGGAGAAGAAGATGAAAATGAAGAAATGAGTAACGAAATTCCCAAAA
AATTAGTATTAAAAAAATCTGACGTTCCGTTGTTTTTAAACGATGATAAT
AATACAATTTTAGTAAAATTTATTGGAAAAAAGTCACGAAAATTATTCAA
AAGATTCAAAATAAATAGCGATTTTTTAGAAACTCATCCGGACACTTGGA
ATATTTCGAATGACTATAAAAAAGGTGAAGAAATAATACAGAAATTAAAA
GTTGTAAACGATCCTGCAGAAAGAGGAATTAAACTTATTGAAGAATTTGA
TAAAAAAAATAACAAAAACGAAGAACAAAAACAATTTCTATTGCAGGTAA
ATCAGTTAAAATATTTATGTACAAACTTATATGTAATAATATTTATTTTT
ATTTTCCAGACCATTCAAGATTATCGGCAGAAATATCCTAAACCAACATT
AGATATTATGAAGAAGTCGTTTTAA
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Coding sequence (CDS) from alignment at scaffold_6:29556831..29557505-

>jg10538.t1 ID=jg10538.t1|Name=jg10538.t1|organism=Eriosoma lanigerum|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_6:29556831..29557505- (Eriosoma lanigerum)
ATGGCTCCTTTGAACGATATTCAATTTTTAAGAAAGTTATATGAGTATTC
TGAAATTAACAAAACTATAGCTGAAGCCACAATTGGAAAATTTGTGAATC
ATTTGTACTATTTAAATGAAGAATGTTTAACTTTTGCATTGTTCGATAAA
CGAGTAGACAGTGCAACAAAATTATTAATGATTAACAATATACTAAAAGA
CGAAGGAGAAGAAGATGAAAATGAAGAAATGAGTAACGAAATTCCCAAAA
AATTAGTATTAAAAAAATCTGACGTTCCGTTGTTTTTAAACGATGATAAT
AATACAATTTTAGTAAAATTTATTGGAAAAAAGTCACGAAAATTATTCAA
AAGATTCAAAATAAATAGCGATTTTTTAGAAACTCATCCGGACACTTGGA
ATATTTCGAATGACTATAAAAAAGGTGAAGAAATAATACAGAAATTAAAA
GTTGTAAACGATCCTGCAGAAAGAGGAATTAAACTTATTGAAGAATTTGA
TAAAAAAAATAACAAAAACGAAGAACAAAAACAATTTCTATTGCAGACCA
TTCAAGATTATCGGCAGAAATATCCTAAACCAACATTAGATATTATGAAG
AAGTCGTTTTAA
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