Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
AED | 0.21 |
QI | 0|1|0.5|1|0|0|2|4|41 |
eAED | 0.21 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
LF015109 | LF015109 | Lysiphlebus fabarum | gene | tig00000743 208..635 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
LF015109-RA:exon:2060 | LF015109-RA:exon:2060 | Lysiphlebus fabarum | exon | tig00000743 208..266 + |
LF015109-RA:exon:2059 | LF015109-RA:exon:2059 | Lysiphlebus fabarum | exon | tig00000743 565..635 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
LF015109-RA:cds | LF015109-RA:cds | Lysiphlebus fabarum | CDS | tig00000743 208..266 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
LF015109-RA:three_prime_utr | LF015109-RA:three_prime_utr | Lysiphlebus fabarum | three_prime_UTR | tig00000743 632..635 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >LF015109-RA ID=LF015109-RA|Name=LF015109-RA|organism=Lysiphlebus fabarum|type=mRNA|length=130bp ATTCTTCTCACTGATCAAAAAAAAAAAAAAAAAAAAAAACATTCAAACAG TATAATAGAGTGTATTATTTTTTTTTTTTTGATAATAATTTGTTATTATT TAATTTTAATTTTTTTAAATTATTAATTAT back to topspliced messenger RNA >LF015109-RA ID=LF015109-RA|Name=LF015109-RA|organism=Lysiphlebus fabarum|type=mRNA|length=130bp|location=Sequence derived from alignment at tig00000743:208..635+ (Lysiphlebus fabarum)|Notes=Excludes all bases but those of type(s): exon.
ATTCTTCTCACTGATCAAAAAAAAAAAAAAAAAAAAAAACATTCAAACAG TATAATAGAGTGTATTATTTTTTTTTTTTTGATAATAATTTGTTATTATT TAATTTTAATTTTTTTAAATTATTAATTAT back to topprotein sequence of LF015109-RA >LF015109-PA ID=LF015109-PA|Name=LF015109-RA|organism=Lysiphlebus fabarum|type=polypeptide|length=41bp
ILLTDQKKKKKKKHSNSIIECIIFFFLIIICYYLILIFLNY back to topmRNA from alignment at tig00000743:208..635+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >LF015109-RA ID=LF015109-RA|Name=LF015109-RA|organism=Lysiphlebus fabarum|type=mRNA|length=428bp|location=Sequence derived from alignment at tig00000743:208..635+ (Lysiphlebus fabarum) ATTCTTCTCACTGATCAAAAAAAAAAAAAAAAAAAAAAACATTCAAACAG
TATAATAGAATATAAAATAAAGTTTGATAAAAATAAAAATTAATCACTTA
TTTTTTTATTTAAATAAGTAAATTTAAGTTTTTTTTTTTACTAAATATTT
GTATTCACGAAATATTCCAATAAAATTTCAATCCAAAAAATGTCACATGT
GTCACAGTTTATTGTTGTTTTTTATTATTATTAATTAATTATAAAATACT
GTCTAATATTTATTTTTAAAATAACAAAAAAATAAATAAATTTTACAATA
TATTAAAAAAAAAAAAATTGTTAAACAAAAAAACAAAAAAAAAAAACAAA
AATACACGTGTATTATTTTTTTTTTTTTGATAATAATTTGTTATTATTTA
ATTTTAATTTTTTTAAATTATTAATTAT back to topCoding sequence (CDS) from alignment at tig00000743:208..635+ >LF015109-RA ID=LF015109-RA|Name=LF015109-RA|organism=Lysiphlebus fabarum|type=CDS|length=126bp|location=Sequence derived from alignment at tig00000743:208..635+ (Lysiphlebus fabarum) ATTCTTCTCACTGATCAAAAAAAAAAAAAAAAAAAAAAACATTCAAACAG TATAATAGAGTGTATTATTTTTTTTTTTTTGATAATAATTTGTTATTATT TAATTTTAATTTTTTTAAATTATTAA back to top
Synonyms
The feature 'LF015109-RA' has the following synonyms
Synonym |
maker-tig00000743-exonerate_est2genome-gene-0.0-mRNA-1 |
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