Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Gbkey | mRNA |
Gene | LOC113548247 |
Model evidence | Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
Product | uncharacterized LOC113548247, transcript variant X1 |
Transcript id | XM_026949029.1 |
Cross References
External references for this mRNA
Database | Accession |
GeneID | 113548247 |
Genbank | XM_026949029.1 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
LOC113548247 | gene-LOC113548247 | Rhopalosiphum maidis | gene | NC_040877.1 19639773..19642490 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
exon-XM_026949029.1-1 | exon-XM_026949029.1-1 | Rhopalosiphum maidis | exon | NC_040877.1 19639776..19640027 + |
exon-XM_026949029.1-2 | exon-XM_026949029.1-2 | Rhopalosiphum maidis | exon | NC_040877.1 19641009..19641158 + |
exon-XM_026949029.1-3 | exon-XM_026949029.1-3 | Rhopalosiphum maidis | exon | NC_040877.1 19642300..19642490 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
XP_026804830.1 | cds-XP_026804830.1 | Rhopalosiphum maidis | CDS | NC_040877.1 19641034..19641158 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=mRNA|length=593bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis)|Notes=Excludes all bases but those of type(s): exon.
ATATAGTaatgttacaattattatattattgcataaattattataatagt tgagtttcaatttttaatattataatttaaatatttctattgtgCTTtgt gcttattataataaataatttattttagacaaaACTATTTCTACGTCTTA ATTCACGATTTGCTATTACTGAATTTGAGCTAAGTAATAGCTACTAGCAC GACTTAAATTCGTTCTTCCAAGAATCCAGGCTCAATTTATAATCACTCGT TGatTTCCAACTTAATCGCTCTCTTAAATGgcctttgaaattaaaaattc tggtAAGCCAAGACAAGTGAGGGGTACTACTGCATACAAATATCGAAATT TGTATGCGTTTGGTGTATTGGCTGTCAGTGGACTTTCTTGGTGGCTGTTT GAaCAATTACCATCTACAAAGatactaaatgaaaaaatcaaaaatggttA TTGGGATCGTACACCTGAAGAAAATTATAGATTAGAAatgatcaaaaaaa atttaaatcctgaaataaaaaatctgaAGGATAGAAAAGATGAAATTATG TCGAAAAAAGAAGATTTTATACcaataaagatataatattgta back to topprotein sequence of XM_026949029.1 >XP_026804830.1 ID=XP_026804830.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=polypeptide|length=102bp
MAFEIKNSGKPRQVRGTTAYKYRNLYAFGVLAVSGLSWWLFEQLPSTKIL NEKIKNGYWDRTPEENYRLEMIKKNLNPEIKNLKDRKDEIMSKKEDFIPI KI back to topmRNA from alignment at NC_040877.1:19639776..19642490+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=mRNA|length=2715bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis) ATATAGTaatgttacaattattatattattgcataaattattataatagt
tgagtttcaatttttaatattataatttaaatatttctattgtgCTTtgt
gcttattataataaataatttattttagacaaaACTATTTCTACGTCTTA
ATTCACGATTTGCTATTACTGAATTTGAGCTAAGTAATAGCTACTAGCAC
GACTTAAATTCGTTCTTCCAAGAATCCAGGCTCAATTTATAATCACTCGT
TGGTACGTTTCTTAAttcactttatttatttttaaaaacctaaaacacaa
tttattctTTAGTATCGGTAAGTACTAAGTAAATCAAATCTGttcgttaa
aatattgtaggtTTCCACATGGTTAAAACATacgaaatacatatatattt
attatatttaatgtagaataatactttgtatatcattttatcattttttg
aattgttCCAATATTAGGTTCAAATATTTCTTGTTTGTATGTACCAGTGG
CGTAGTTATGAGGAGGGAGCAGGGGGCTCTTGCCCTCCCCAACCTCCTct
gaaaatttacttttaaaaaaactgtatattgtagttgtattatattaagt
tctatattgtatcatttattttattattatcatttactgaaattaatttc
taattactACCGATATACTTGTGTATTTgactttatataattcatgatta
ttatgaacaattttgaaattttgaccaCTCCCCTACTTAAATTCCTAGCT
ATGCTACTGGTATGTACCAtatgatttacaataaaacattgtacagtttt
attgttaaaatttataaatttagatatcAATACTTAAAgtaatatgaaaa
ttcaaGATCGATTAATCTTTTCAAAAGttgatacttaattttataaaatt
ttaatttatatttctattattaatataaatcgagatataaatatatctaa
ataattaatgcttacttcaataatatctcacttattcaataaaatattaa
aattattattctattattaactacattaaaaaaaatgtatatatattaat
aaaattattaattataataaaaaaccaaatgTATCTAACTACgtagtaaa
caatataaaagtgataattacaattttaatgaattcaaattgaaCTAATG
AAGtgattagtaaattataaattattttaaaaatattcataaattatcta
aatcttatattattttgttattattatttgaagatTTCCAACTTAATCGC
TCTCTTAAATGgcctttgaaattaaaaattctggtAAGCCAAGACAAGTG
AGGGGTACTACTGCATACAAATATCGAAATTTGTATGCGTTTGGTGTATT
GGCTGTCAGTGGACTTTCTTGGTGGCTGTTTGAGTgagtttttgtatatt
tatataatatttgattaattttgaatttgagaGCTTACATtacattagat
attttatcaattactattctaatttaaaatgttaatgcaaattaacaaaa
aattaaactactcttcaaatattcattaatcatacattacaaatttaaaa
aattttactatagattatgaaattaaaacatttaaaaataatagctaagt
aaattgttaattttctaaaaacttatattctttgaaataataaatattat
ttactgtaaaaaatagcaaataaatcatagaaaaataaaccataattaCT
TTTACTACATTAAAGAGTTATTGcaaagatattaaatataatttatacat
tttttatataataatatataatagtaataattattatgtattttaattgt
atactattaaagtatttttcagtaaatgtacatattataagatttcaatg
tttattgacatgtaaatattatatattctgttttttgcattatttatttt
ttctttagcgCCTATGTGCAACATAAACAAATCTCATTCAAAAGTAGAAg
agtaaaagttatttatctaaacaataatatttttgaagataTGACATATT
Agtttatcttaatatattaagaaaaatatcctttttaaatttacaaaatt
tcttttttttattaaaattgaatattattaataataaaatataaaactga
ttTATCGCACcttctaaaattgtatttcctatagtttttataatagatta
agttataataattatattcttaggACTACCtactcaaatattatataaaa
caattttacatgAATCTATTTCATTTATGTTGTGTGTTGgtctaatgatt
aaaaaaagaaactaatacttaaattatttaatcatataacaaaatattgt
tgttaacaTTATGAATTGTGATCATTGtgtataactttttatcaTAGAAT
AAGACTGATCACTATAGATAAATGTGTAGAATATATTCTgtgattaaaca
aaaattatatattttcatttcaattttcataattttttttttttttatac
cttataccttataatagcagctataatatatgtattaaagaaTTGCATAT
GTAATcattctttttcttttatagaCAATTACCATCTACAAAGatactaa
atgaaaaaatcaaaaatggttATTGGGATCGTACACCTGAAGAAAATTAT
AGATTAGAAatgatcaaaaaaaatttaaatcctgaaataaaaaatctgaA
GGATAGAAAAGATGAAATTATGTCGAAAAAAGAAGATTTTATACcaataa
agatataatattgta back to topCoding sequence (CDS) from alignment at NC_040877.1:19639776..19642490+ >rna-XM_026949029.1 ID=rna-XM_026949029.1|Name=XM_026949029.1|organism=Rhopalosiphum maidis|type=CDS|length=309bp|location=Sequence derived from alignment at NC_040877.1:19639776..19642490+ (Rhopalosiphum maidis) ATGgcctttgaaattaaaaattctggtAAGCCAAGACAAGTGAGGGGTAC TACTGCATACAAATATCGAAATTTGTATGCGTTTGGTGTATTGGCTGTCA GTGGACTTTCTTGGTGGCTGTTTGAaCAATTACCATCTACAAAGatacta aatgaaaaaatcaaaaatggttATTGGGATCGTACACCTGAAGAAAATTA TAGATTAGAAatgatcaaaaaaaatttaaatcctgaaataaaaaatctga AGGATAGAAAAGATGAAATTATGTCGAAAAAAGAAGATTTTATACcaata aagatataa back to top
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