Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
eAED | 0.45 |
QI | 0|0|0|1|1|1|2|0|126 |
AED | 0.45 |
Note | Protein of unknown function |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
SNONA2_00000853 | SNONA2_00000853 | Sesamia nonagrioides | gene | scf7180000016091_1 11853241..11856356 - |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SNONA2_00000853-RA:exon:17913 | SNONA2_00000853-RA:exon:17913 | Sesamia nonagrioides | exon | scf7180000016091_1 11853241..11853429 - |
SNONA2_00000853-RA:exon:17914 | SNONA2_00000853-RA:exon:17914 | Sesamia nonagrioides | exon | scf7180000016091_1 11856165..11856356 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SNONA2_00000853-RA:cds | SNONA2_00000853-RA:cds | Sesamia nonagrioides | CDS | scf7180000016091_1 11856165..11856356 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SNONA2_00000853-RA ID=SNONA2_00000853-RA|Name=SNONA2_00000853-RA|organism=Sesamia nonagrioides|type=mRNA|length=381bp|location=Sequence derived from alignment at scf7180000016091_1:11853241..11856356- (Sesamia nonagrioides)|Notes=Excludes all bases but those of type(s): exon.
ATGGACAAGAAGTATTACCTGGTTTCCGAAGCATACAATATGGCGAAGAG CCTCTTCAATCAGGGTCATTCCAATTACATCAGTTTGAAGAGCAAGTCCT TAAAAACCATAGACACGTTCCTAGACCTCGTCATCATTATGAACGAGGAG ATGTCCAAGGAACTGAGGAGTGCTGTCCTGAAGTTCTACAAAATGATAGA AATAGTCGAGCACTGCCTTATGGACCCTCTGGAAAAGCTGGAACAGATTC GCTCGCAGTTCCATAGCGTCATCAAGAACTTCCAGGATGTAAGGAACTTC GATTCAGTCAACAAGTGTCATAAGGAACTGCCTGATGAAGTCGCTGCAGC TCACTGTTTGTTACACCAAGCAGTACTGTAA back to topprotein sequence of SNONA2_00000853-RA >SNONA2_00000853-PA ID=SNONA2_00000853-PA|Name=SNONA2_00000853-RA|organism=Sesamia nonagrioides|type=polypeptide|length=127bp
MDKKYYLVSEAYNMAKSLFNQGHSNYISLKSKSLKTIDTFLDLVIIMNEE MSKELRSAVLKFYKMIEIVEHCLMDPLEKLEQIRSQFHSVIKNFQDVRNF DSVNKCHKELPDEVAAAHCLLHQAVL. back to topmRNA from alignment at scf7180000016091_1:11853241..11856356- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >SNONA2_00000853-RA ID=SNONA2_00000853-RA|Name=SNONA2_00000853-RA|organism=Sesamia nonagrioides|type=mRNA|length=3116bp|location=Sequence derived from alignment at scf7180000016091_1:11853241..11856356- (Sesamia nonagrioides) ATGGACAAGAAGTATTACCTGGTTTCCGAAGCATACAATATGGCGAAGAG
CCTCTTCAATCAGGGTCATTCCAATTACATCAGTTTGAAGAGCAAGTCCT
TAAAAACCATAGACACGTTCCTAGACCTCGTCATCATTATGAACGAGGAG
ATGTCCAAGGAACTGAGGAGTGCTGTCCTGAAGTTCTACAAAGTGAAATA
TTTACATGATTTCACTAATTATATTATTAGTATGGAAGAGGTATGTATTT
GAAGGTTTCACGTCTCGCAAGTCTCAATTAAATATCTAGGCATTAACTAA
AAGGTACCTACAGACGACAGCACATCAAGCTACTACAATCTGTCAATTTC
TTTACCAGATTTGATCTTTATATCTAAATAAAGTATTAAGGTTCAATGTT
GACTGAAAATATCTGACAGTTTCGGGAGCTTGATCTGCTGTCGTCCTCAC
CAAGGTCTCGACTTCCTTACGAGGTGGACTTTAGGTGACAGAGTAAAAAG
TAAAACCTGATTGTATTATACTTTTTGCTGCGCTTACACTACATGAGATC
AAAATTCGTTATGCTCGAAATAGGCCTTTCCACTTGCACGCCATTCCACT
CGATTCTTATCCAGCTGCTACTAGCCACCCTGCGAAGATCGTCGCCCCGC
TTAGTCTCATCATTCTCCTGCCCTTATCCCAATTTATTTGGGGTCGGCGC
AACATGTCTTTTTCTTCCATGCATCCCTATCAGAAACCATCTCGGCAGTC
ACCCCCTTCTTAGCCATATCATCCTTCACACATTCCATCCATCGTTTCTT
TGGTCTTTCCCTACTCTTATAGCCATCAACATTCATAATTATGACTCTCC
TCACGACATTCTCCTCAGTTCTCCGTAACACATGCCCGTACCATGACAAC
CGATTTCCACACAACTTTTCAGCTACCGGTGCCACTTTCAGACTTTCTCT
TATGTACTCATTTCTTATTCTATCCATTCGTGTAACACCACACATCCCTC
TTAGCATTCTCATCTCGGCTGCATGCAATTGCCTTTCATTCATCCCTTTC
GTAGCCCAACATTCTGATCCATACAAGACAGCAGGTCGGATCATGGTTTT
ATATATTTTCCCCTTAAGTTTAAGGGGAATGCGGGAGTCGCAAATTGTTC
CCGTGACCTGCCGCCATTTCATCCACCCAGTGTTAATTCTGTGCTTAACC
GTCCGATCTATTTCGCCATCGCTTTGCACGAGTGAACCGAGATACCGAAA
GTCGGAGCAGATTGGTAGGAGTGCGCCATCAAGGGCTATGGCTCCAGAAG
TGGAGAGACCGCCGAAATCGCAGAACATATATTCGGTTTTGGTTCTGCTG
ATTTTCAAGCCAACATTCTCCAGCTTCTGTTGCCATTTCTCCAATCTGCT
CTGGATCTCAGGTCCATCTTCACCGACGAGAACAATGTCATCGGCGAACA
GCATGCACCAGGGTGCCTCCTCCTGGATGTCCGACGTAAGAGCGTCCATA
ATCAACAGGAAGAGGTACGGACTTAAAGCCGATCCCTGGTGCAAGCCTAC
CGCCACACTGAACTCGTCGGTATTGCCAGCAGCCGACCGGACGTAGGTAC
GAGATCGACTGTACATAGCACGAATTAACTCTACATACTTCCCAGGCAAA
CCTTTCTCTTTCAGGGCCCACCACAGCACATCACGAGGTACCCTATCATA
CGCTTTCTCCAGATCAATGAACACCATGTGCAAGTTCTTGTGTGCACGTC
TGTACTTCTCGCACACTTGGCGGAGTGCAAAAGTGGCGTCCATTGTTCCT
CGACCTGGCATAAACCCAAACTGGTTTGGGGTAATCTCACTCTCCTCTCG
CAATCTTTTCTCAATCACTTTCTCCCATACCTTCATACTATGTGACATGA
GCTTTATCCCTCGATAGTTGTTACAGTCCTGTACATCACCTTTATTCTTA
AAGATGGGCACTAGTGAACTATTGCACCATTCTTGTGGGATCTCTCCTTC
ATGCAACAACTTATTGAAGAATAAAGTCAGCCACATACATCCATCTCCTT
TTAAACACTTCCATACTTCTACTGGTATATCATCTGGGCCCATAGCTTTT
CCATTTTTCATACCTTGAACTGCTATTCTTACTTCATCCATGCTAATTTC
TCTTACTAAACCCATATTCTCTTGTACCTCTTTGAGCACGCCACTCCATT
TATTCTCTTCGTTCATTAGCTTTTCAAAATAAACCTTCCATCGCTCTTTT
ATTTCGTCATCCCTGGACAGAACCTTACCAGCATCATACATTTGATATTA
CTTATATCTCTCGTTCTCCTTTCTCTTGCTTTTGTAATCCGGTAGAGCTC
CTTCTGGCCTCTAGGGCTGTCTATATAAGTCTATACAGTCTAAATTACTT
CATCGAATTGGGATTGAAATCGGTGGTAATTCAGTCAGAAGGACAATGGA
GAGGGCTATGCTTCGGGTTTCACTGCGTGATCAAATCAGACATGAGGAGA
TTCTCAGAAGAACGAAAGTAACCGACATAGCCCGAAGAATTGCAACACTA
AAGTGGCAGTAGGCCGGGCACATTGCCCGTAGGACCGATGCCCGATGGGC
CGACGGGTTCTCGAGTGGCGACCACGCACCGGAAGACGCAGCGTGGGTAG
GCCCCCAACAAGGTAGACCGACGATCTGGTGAAGGTCGCAGGAAACCGCT
GGATGCGGGAGGCCCAGGACCCGTCGTCGTGGAGATCCTCGGGGGAGGCC
TATGTACAAAGTCTTTCGGCTGAAATAATGACGATGGGATTTTCGAGATA
TTAGTTATTTTGGTAGAACTTACATATATAACAGCGTAATGCTATTTGGA
TTGATTAATAAACGATTTATTACGATCCTAAACCGTTCATTCTATACCCT
GCCTGACATTTCTCCCTACGTCTTTAGATGATAGAAATAGTCGAGCACTG
CCTTATGGACCCTCTGGAAAAGCTGGAACAGATTCGCTCGCAGTTCCATA
GCGTCATCAAGAACTTCCAGGATGTAAGGAACTTCGATTCAGTCAACAAG
TGTCATAAGGAACTGCCTGATGAAGTCGCTGCAGCTCACTGTTTGTTACA
CCAAGCAGTACTGTAA back to topCoding sequence (CDS) from alignment at scf7180000016091_1:11853241..11856356- >SNONA2_00000853-RA ID=SNONA2_00000853-RA|Name=SNONA2_00000853-RA|organism=Sesamia nonagrioides|type=CDS|length=381bp|location=Sequence derived from alignment at scf7180000016091_1:11853241..11856356- (Sesamia nonagrioides) ATGGACAAGAAGTATTACCTGGTTTCCGAAGCATACAATATGGCGAAGAG CCTCTTCAATCAGGGTCATTCCAATTACATCAGTTTGAAGAGCAAGTCCT TAAAAACCATAGACACGTTCCTAGACCTCGTCATCATTATGAACGAGGAG ATGTCCAAGGAACTGAGGAGTGCTGTCCTGAAGTTCTACAAAATGATAGA AATAGTCGAGCACTGCCTTATGGACCCTCTGGAAAAGCTGGAACAGATTC GCTCGCAGTTCCATAGCGTCATCAAGAACTTCCAGGATGTAAGGAACTTC GATTCAGTCAACAAGTGTCATAAGGAACTGCCTGATGAAGTCGCTGCAGC TCACTGTTTGTTACACCAAGCAGTACTGTAA back to top
Synonyms
The feature 'SNONA2_00000853-RA' has the following synonyms
Synonym |
maker-scf7180000016091_1-augustus-gene-118.17-mRNA-1 |
|