GSSPFG00001269001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	GSSPFG00001269001-RA
Unique Name	GSSPFG00001269001-RA
Type	mRNA
Organism	Spodoptera frugiperda corn (Fall armyworm - corn variant)

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_14312:2260..6517-
coding sequence from alignment at scaffold_14312:2260..6517-

spliced messenger RNA

>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=660bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGGACACGATACTACAGCAATGGCGCTCGTTTTTGGACTA
ATGTTGCTAGCAGACCATCCAGAAGTACAGGAACGTATTTACGAAGAGTG
TCAGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGG
CTGAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTAC
CCGAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGG
TAAGCACTAA

protein sequence of GSSPFG00001269001-RA

>GSSPFG00001269001-PA ID=GSSPFG00001269001-PA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=220bp
YLLQKYVTYHYFPETAMGTQLDSDSSTKTQEYKTAILQIGGLLMGRLTRV
WLHNEYIFRKFPIGKQFEKCLEKVHSFADNVIMERKKNWTPGQSDVVEDE
VGGKKRLAMLDVLLEAERKGEIDLEGIREEVNTFMFEGHDTTAMALVFGL
MLLADHPEVQERIYEECQTILGDSDTTPTMSDLAEMKYLEAVIKETLRLY
PSVPFIAREVTEDFMLGKH.

mRNA from alignment at scaffold_14312:2260..6517-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4258bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGTGAGTTTCTAATTATTATGTTAAGGATGAAAAAAACCG
TCTTGGACCTTTAGAAAAGTTTAAAATCTGACTTCTGTGTTCTTTCAATA
GTAAAATCATATCCAAATAGCGTGCCTTTTATTCCCGAAGGGGTAGGTAG
AGGTGTAAATTCTGGCACGTAATGCCACTGTATACCCACTTTGCACTATT
TATGTTATAAGTCCTATGTAATGGGGGGTGAGGCTATTGCCATATACCGG
GCACATTTCCGGAGTCCGTGACTACAGAGAAATTAAAAAAAAGAAAAATA
ACAAAGTAACACTTTGCTCGGCAGTAGCATTTGCGACCCCTCGGCCAACA
GAGTAACTAACCTTGACAAATTGCGTAACTTAATAAAGCTTAAAGCAGAC
TCGCTCAGACTTCTTTCAGGCTATTTGCAAATAAAATACTGTCTCATTTG
ATTTCACAATTCCTGGTATTCGGATATTTGGCAAAATAAACATCTAGTAT
GTAAATCACGTTTATCATGACATGGACTTTCATTGCGTCAAGTAAAGTAA
TTCAGCGAACTCATTAGACACGGTAATTAATATTTTTACGAAAAAAATCT
TCCAATTTTTGTTAATGGCGGTTGAAACTATGTTGAAAATACTTAGAAAA
TCAGGGTTTAGTGAAAATGTTTTGGCTTAGAGACAAAAGAGGGGATTTTC
GAGATTATTCCTTTGTTAATAAGGTTGTTTTTTCAGGGACACGATACTAC
AGCAATGGCGCTCGTTTTTGGACTAATGTTGCTAGCAGACCATCCAGAAG
TACAGGTAATTTAAAATTACTTTTTACCTGACTTTCGGAAGGTGTGTGGT
GTGTTTATTTTCTTATTTATATAATTGTGTGTCGGCGTTATAAGCTATAC
CAAAATTTTTTTTTTCGAGGTTCTAATCAGAGTCTGTAGCTAAATGCCAC
TTAAGCGCTTGTTTACCCAAAGAGCCAACAAGGGCTGATGTCGGAGCTGC
GGAATGCCTAGCGCCGCCCTCGGGCTCGAAAACTAAGTTTTTCCAAAAGA
AATCTTTTTCAAAAACAAAAATCGTTTGTCTTGTCAAAATTTACGTCAAT
CCCATTATATTTTTTTACACTCTTTGTAGACAAGCGCTAAATGGCATCTG
GATAGAGGCTGAGGAATCCTTTATCACAATCCAGTACTTAAATATTCTGA
CGTAGGCACAGGAAATTAGAATTGATAGCTGGCTGGATTTGTATCCCTAA
GCGAAGGGTATCGTGTGGTACACAGTTTATCTTAATTAATCGCTAGTTAA
TCCCATGTGACGTATCTCCTAGTGGTAGTATCTCGACATGTTTTTGTGAT
AAAGGTTATTAATGATCGAGGTTTTCTATACAATTAGTGCTAGTGTAAGT
GATTTGGGACTCATGCCTAATCCAGATCTGCGGACTACCTAACGGGTTTA
CCGGGGATCCGGCTTGAAGGTCAGAAGTAGGAACGGGGTGGTTTTTAGTT
AGTAAGAGTATGACACTCAATTCGTCTCGCCCAAGGCGAGAGAACTCGAT
TGCATAATTTTCCCGCCTTAAAAAAAAAGTTTCAGTGATTCGGTTCACTT
TTTGATTTACATTGGTAGTAGTATTAGGATTAAACATCTGTCCGTCTATA
GATCTTTTGTTAAGGAGACCATAGTCATAATTTTCTCGCGTTCTAGATGA
GATAAGGAGTGTAAATTTTTTATCTGACTTACATTGTTCCGGTCGACATC
TGTCTATAGATCTGACGTGATAGGTGGACGTGGTGTCCTAGATTTTCTAA
CGAAATGTCGTATGTATTTGAAATTCTTAGTATTGCGCTTTATATTATGA
AACTAATAACATAAAGAGTAACGCGTTGCTGTCAATCCTTTCGTGGAATC
AGAGTAATATATTTACAAAATATTTTCATCTTTCTGGCGACACATGACAA
ATTACAAATGACAGAAGTCGCACATAGACGATCGACGAACAAATTAAAGG
AGACGTCATGAATCCAACATCGCACATGTGAAGTTTACATGCGAATAAAC
ATGGATATAAATTCCCAACGAACAACAGTTGGGCAGAAAGCCCGCCAGGC
ACTATCACCTCGCCTAGTCGGAGGATCCTCCTTTTCCGATTTTATGGAAC
TTAACGCTCTGATCCCTAAATCCTTTATATATCTGTATAGTGGCTGAGAG
TCTCCCCATATGACGTTATACGCGTTTCCTATTACATGATATAATTACAA
GGCTAGCGGAATGGATGTAGTTAACGCGTCTGAATGGCCTTTCACAGAAA
CCGGCTTCAGATTCACTTTAATTAAAATTATTTAACGTTTTCACGACTCT
TGATGATTAACAAGGATCGTATCGAATCGATAGTGCATCTTCAACATCAT
CATTTGCTGTGAGTGGCATTTTTTCGAAAGAGGGTTTGGGTTTTAACTTG
TAATTTCTTTGTCCTGCCTTTTTTTGCTAATAATCTTCTATGAAATAAAA
ATAAGTTGGATTTTCCTTCCTGATGCTCTAACTCCAGAACGCACGAACCG
ATTTCCATGGTTTTGCATTCGTTGGAAAGGTTTCGAGCTCCGTGAGGTTT
ATATCAAAGAAAATTCAAATAATTCAGAAGCCTAAATTCTGCCACAAGTC
ATTATTGTACGTGGACGAAGTCGCGGGTACTGCTAGTAATTATTACAATT
CAAAATTATGTTGTCACAGACATAATCATGAAATTATTAAGAAAATCCTG
GCTTTGGTTTTTGATTCGCGGAAGTATATTTCGGTTTGGCCTTGAAATTA
CCCGTAAAAGAATTGAGTGCTTTCCATTATGTCATTCTAAAATAACAAGA
TAAAAAAGGCATGGCAATATATATTATGGTGTATGATCATTTAATTTTTA
CACATTCATATCTCAGAGAAAAATAAATTACATTTTACTGTATTAACCTC
CCACGGAAAAAAATAAAGTACTCGATTTGTTAGAATGTTTTACCATAATA
AACAACTTATTCATATTTTATTTCGCCGCGATATGTAACCAACCAATAAA
TTTTATCCGGCTTCTAAAGCCTCTTAAGTGAGTGTAGTAAATTCTTTGCC
CTCAAGAACCCAAGGTCATCAGACAAACTTTGAACAAGATAACAAAATCT
TGTCAGAAAATACTTTAAAGTTCCCAATTTTTTTGTAAAGAAACATTTTT
TCAAGTGTTCACGAAGGCTTTGTTAATCTAATCTAAGGAAACGTTTGGGT
TGTGTCTCACTTTTAGTACCCAGCCGCCATCTTAGGTTGACGCAAAAAAA
AACAAAATGGAAGCTGTTTTAGCAATTTACCGCTGTTTAATGCGAAACTT
TGGTCTTTATTGTAATGTCCTTTGAAGATATAGGGGTTCATGCAGAATTT
GCGGAGTTATTCAGGCTTGAGTTGGTACTGGTGTGGTGTATTATTGTGTT
TTTCATAAAATATTTTTCGTATTTAAAACTTTCTAGGTTATTCTGTAACT
TTTAATTTAAAAGAACGAAATAAACTCGATTGCTTTCCGCCATGTCATTG
GTTATGAGAATAATCTCGACCAATGACAGGCGAGAAAGCGTTCGAGCTCA
TTCTAAAGTTCGAATTGACAGTTACAGAATAACCTAAATAGCCATAGAAT
ACCTAGCTTATCGTTATTTTTTCCACAGGAACGTATTTACGAAGAGTGTC
AGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGGCT
GAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTACCC
GAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGGTA
AGCACTAA

Coding sequence (CDS) from alignment at scaffold_14312:2260..6517-

>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGGACACGATACTACAGCAATGGCGCTCGTTTTTGGACTA
ATGTTGCTAGCAGACCATCCAGAAGTACAGGAACGTATTTACGAAGAGTG
TCAGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGG
CTGAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTAC
CCGAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGG
TAAGCACTAA