GSSPFG00013663001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	GSSPFG00013663001-RA
Unique Name	GSSPFG00013663001-RA
Type	mRNA
Organism	Spodoptera frugiperda corn (Fall armyworm - corn variant)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
GSSPFG00013663001	GSSPFG00013663001	Spodoptera frugiperda corn	gene	scaffold_11131 3..4089 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00013663001-RA	GSSPFG00013663001-PA	Spodoptera frugiperda corn	polypeptide	scaffold_11131 3..3858 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-1	Spodoptera frugiperda corn	CDS	scaffold_11131 3..92 +
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-2	Spodoptera frugiperda corn	CDS	scaffold_11131 961..989 +
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-3	Spodoptera frugiperda corn	CDS	scaffold_11131 1245..1350 +
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-4	Spodoptera frugiperda corn	CDS	scaffold_11131 1640..1870 +
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-5	Spodoptera frugiperda corn	CDS	scaffold_11131 3005..3140 +
GSSPFG00013663001-RA-CDS	GSSPFG00013663001-RA-CDS-6	Spodoptera frugiperda corn	CDS	scaffold_11131 3470..3858 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-1	Spodoptera frugiperda corn	exon	scaffold_11131 3..92 +
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-2	Spodoptera frugiperda corn	exon	scaffold_11131 961..989 +
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-3	Spodoptera frugiperda corn	exon	scaffold_11131 1245..1350 +
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-4	Spodoptera frugiperda corn	exon	scaffold_11131 1640..1870 +
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-5	Spodoptera frugiperda corn	exon	scaffold_11131 3005..3140 +
GSSPFG00013663001-RA-exon	GSSPFG00013663001-RA-exon-6	Spodoptera frugiperda corn	exon	scaffold_11131 3470..4089 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00013663001-RA-UTR	GSSPFG00013663001-RA-UTR-1	Spodoptera frugiperda corn	UTR	scaffold_11131 3859..4089 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_11131:3..4089+
coding sequence from alignment at scaffold_11131:3..4089+

spliced messenger RNA

>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGATCAATATT
ATGAGCGATATGTAACTCTAGTCAAAGTGAATTACTTCGTACAATTCTAC
TGGTTGATGTGGAGGAACATACAAGCGTTGAAGCGTAACTACACTATATG
GATAGCCGAGTTCTTGCTGCTCATGTTCGTAGGTCTGATAATCTCAGTTC
CCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGACATTCAGAACGTG
GAGGGTCTCCTCTACCTCACGATTACAGAAACGATATTCCTCTTCATATA
CGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATACTGCTTCGGGAGA
CCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTGTCGAAGATGATA
TTCTGGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTAT
ATTCTTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCA
ACTTCGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGCTCATTC
CTATCGGCGACGTTCAACTCAATGGAAACAGCTGCATTGGTATCTGTACC
TTTCGACCTGATTGGCACAATGTTTTCTGGTCTATACTTAAACTTAGCTA
GCGTCACACCGTACATATCATGGCTTAGATTCGTATCAGGTTTCTACTAT
GGCGTTGAAAGCATCTCTATACTCCAATGGGATTCCATCGAGACCATTGA
GTGTGTACAAATCGATGGCATGCCTTGTATAAAGACAGGCCCTGAGGTGT
TGAGAAGGTTTGGTTTTGCTGAAGAGCATTTTTGGCGTAACTGCATCTGT
TTGTTTAGTATGTACTGCATAGCTCATTTCATAGCCTTCCTTATGGTCAT
GAAGAGAAGTAGGGGCACTCCTGTATACTAGAAAATAGTTGAATTGTACA
TAGCTTTTAACTTTAGCATCACTTCGGGCTGCTCTGATATAAACCCGTGC
CATAAAGGTGAACAGGGTCTAGGTCGATTAAGTTTCCCTTATGATAATAT
GCTCTATTAAATGAGTTGTCTTAAAAGCCTTGTTGGTAAACTCAACGTCT
GGATTGGCAGTAATTTTATAGATCTGATGAATTGGCTCAATAAATGTTAT
GAAGTTTTTAAA

protein sequence of GSSPFG00013663001-RA

>GSSPFG00013663001-PA ID=GSSPFG00013663001-PA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=327bp
SRSDIAAEIDSKVGHVKDETEYFNGETDEKDQYYERYVTLVKVNYFVQFY
WLMWRNIQALKRNYTIWIAEFLLLMFVGLIISVPYNGHFDELDQRDIQNV
EGLLYLTITETIFLFIYAVFITFPSEVPILLRETASGLYAPLPYYLSKMI
FWIPRAVIEPTLFTTLIFLVAGLHGGFMGWLGFNFVCILCANYANAYGSF
LSATFNSMETAALVSVPFDLIGTMFSGLYLNLASVTPYISWLRFVSGFYY
GVESISILQWDSIETIECVQIDGMPCIKTGPEVLRRFGFAEEHFWRNCIC
LFSMYCIAHFIAFLMVMKRSRGTPVY.

mRNA from alignment at scaffold_11131:3..4089+

Legend: polypeptideCDSexonUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4087bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGTAGGTCCTT
AATATTAAGGTAATTTTAGAAAAAAAAAACTCCCTTAAACCAATCTTAAC
CGATGAGATCTTAACAGAAGATGCATGAAAAGACTGATAAATGTTGATGA
AGCGGAAGAGGTATGTAAGATTCGTAGCAATTGACGTGTCATTGTTTCTA
CCTACCCCCACGGGATACCTCACGCTTGCGTGAGGTGATGTATGTACAAA
AATCGTTTAGTTTTGGTTCTCGTTTTTATGGAAAGGAGGTTTGTGCTATG
GTTTGTTAAAAAATCTACTAATTATAGCAATGTTTCTTCAATTATGTCAG
ACGGAAGCATTCTATAACTTTTGTGTCCAGTCCTACAGTCCTAAACCACT
ATCTTAATGGATTTGCCATTTAATAGTAATAAAATTCAAATGTTTTAACA
TGGTAAAATTAACGTTAGATAAGGGAGTAGACCTTATCTTATCTTTTTTT
AAAAAAGCAAGTCCGATATGGAAACTTTTGGACGTTTTAAGAATAAAAAA
TTAAGCATATCTAAAATTGATCTTTGATCGTTAAGATAGATCAGTTTTTT
ACAAATGTCAAATCTATTAAATCATCAACAGTATCGTGATTCAAAATATT
AATGAATTCATTTTCAATAAACAACTTAAACATTCAGATAGGAAAATGTC
AATACGTAAATAAATAATATTTTTATTAGGCTATTGTCCAAGATAGATAG
ATTCTCACGATGATAACATTACAAATTATGTATAAGAACAAGTATAGAAG
ATTACATTTGAATTTCGTTTTGGAGCTAGATGTGATGATAAGATGATATT
CATTGTAAAATGATATCCAATTAATGATTTTATTACAAATGTTTTTTTCT
TGTTTCAGGATCAATATTATGAGCGATATGTAACTCTGTAAGTTTGTTTC
ATTATTTTTCTTCTTATTTTGACAATTGTTTCTTAACTTCTGTCCCTTTT
TTGCTATTACCGAGATTTTATTTTACCATTAATTTTAAGAGTTTTATTAG
TTTTTCTTTTCCGTTTATCATTTTTACCCATTTTAAACTGATCTCCTGAT
TGTTTTTCGAGATGTATGAAATACTTCTTTGTCATGTGCCTACGTTGTTC
TTCTGGTCAGAATATTTTATTCATTTGTTGATGTATTTGCAGAGTCAAAG
TGAATTACTTCGTACAATTCTACTGGTTGATGTGGAGGAACATACAAGCG
TTGAAGCGTAACTACACTATATGGATAGCCGAGTTCTTGCTGCTCATGGT
AAGCTTCAAATTCTTCATCGTCTTCAGTGTCATCTACTTAAGTTATTAAT
GTTTTGCTTTCCATTCTATAGTCGTTCTTATGTATAAGTAGAATTTGGTA
AAATAAGTGCTTATCATTTTTTTTATTCCACTAATGTCAGTACCAAATGT
AGCTTTATCCTGCAGTTTGTACAATTTCTTTATCGCACTATTAATCAAGC
TCTAATTTTCAGTTCCTTCTAAAAGTAGATGATCCTAACGTCCAATTTTT
AGTTCACCAGTATTAATTTAGTTCTGTCTCCTCACAGTTCGTAGGTCTGA
TAATCTCAGTTCCCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGAC
ATTCAGAACGTGGAGGGTCTCCTCTACCTCACGATTACAGAAACGATATT
CCTCTTCATATACGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATAC
TGCTTCGGGAGACCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTG
TCGAAGATGATATTCTGGGTAAGTTTTGATTTTCTTATAACTAGTATATC
TTTACCTACGTAGTAATTTTTGTTTTCCTTTGACATATTCCAAAAGTCTG
TCTAGTCACTAACATTTACTTATAGAAGGGGAATTAAATAAAGTCTTTAA
GAAAGGTTTCCAAAAAAATATTGTGTAGAAAAAGACCTTTAGATGAAGCT
CTATAACCATGAAAGTATTGGCAATACTATGCGTATCTTACTTCTACAAA
ACTTAACAGAAGAATACATTTATTAAGACGTGATAGATACTCTAGCAGCA
AATCATCATGACGTTGATGTTCTTGTATGAATTGAATACAATGAAAACAG
TTACATTGGCTTATACTCATCCGATTAGAATGACAAAGACTTTGATTCAT
TCAACAAGTTCTTAAATACATAAATCATTCCTATAGTGGGTGTTCAAATC
TGTTCACCGCCAACCATTGCCCATTGTCCACAGAAGTAAATATCGGTGTT
GATGGAATTATAATGTGGTAGAAAGTTTTATTTTTATAGCAAGGCCCTTA
AATTGTGTCATCTACAAACGATCATGGCCAAACCAGTTTAGTGCTACCAT
CGTTAACATTCCGTTTAGTGGTTTTGGAATATATTTTTCTGTGAATCGTA
GCCGTTTCCACATTGGTAATTATTAAAATGTTGATTTTACATAAGTAATC
AATTTATTGGTAAGCTACTGCGGTCGCGTTATCACATAAATCTTGTTTGT
TAATGATTTTTGACTTGCGCATTAAAATATGTCGTAGAACTAGTCCATTA
CTTTATTAAATGAAATCGTTTAAAAATTGTATCGTTAAATATTATATCGT
TGCGTGGTCGCATCTATACCTTGATATGATCTTATATTCTATTAGGCCAT
ATTTATGTAAGATCTATGGAGAAATACTGATTCCTAATACTATCTGGACA
TGCTAAAAACATAATATAAAGCTACCATGTAAGAAAAAGTCATAAAAAGA
ATATAATGTTTCGAATCCGATGCAATGTGGTTAATAAGCGGCAGTTTTTT
TGCATATACAGTTAGGCTATATCATCATCTTCTTCAAACCAAATAAAAGT
CACAAGAAAGACAAATTCATGGCAAATATAATGTTTCTCTTTCTCTCTCT
AGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTATATTC
TTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCAACTT
CGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGTAAGTCCAATG
TTTTTATTTTTATCTAATGGTAGTCTTAGCCTTTGTTCCCTTTTAAGTTC
TATGTAGTTAGTTGACCTTGCTTTATTTCAGTAACAATTATGTACTAGTA
ACTTTAGATTTTGTTGTTCTTATATTAAGAGCGAATGTTGTATATTATTC
ATCTTTGTACAAACTAAAAGAAATAAAATTAATTTTTATATCTAATAAAA
ATTTACTACTATTTAATTCAATTTTATCAGCTGGCAAGGCTATCAAAATT
CTAAATTCAAAATTTATGTGACCACCATTTTAAAATTGGCATTGCAATTC
TCTTTTCGAAATTCCAGGCTCATTCCTATCGGCGACGTTCAACTCAATGG
AAACAGCTGCATTGGTATCTGTACCTTTCGACCTGATTGGCACAATGTTT
TCTGGTCTATACTTAAACTTAGCTAGCGTCACACCGTACATATCATGGCT
TAGATTCGTATCAGGTTTCTACTATGGCGTTGAAAGCATCTCTATACTCC
AATGGGATTCCATCGAGACCATTGAGTGTGTACAAATCGATGGCATGCCT
TGTATAAAGACAGGCCCTGAGGTGTTGAGAAGGTTTGGTTTTGCTGAAGA
GCATTTTTGGCGTAACTGCATCTGTTTGTTTAGTATGTACTGCATAGCTC
ATTTCATAGCCTTCCTTATGGTCATGAAGAGAAGTAGGGGCACTCCTGTA
TACTAGAAAATAGTTGAATTGTACATAGCTTTTAACTTTAGCATCACTTC
GGGCTGCTCTGATATAAACCCGTGCCATAAAGGTGAACAGGGTCTAGGTC
GATTAAGTTTCCCTTATGATAATATGCTCTATTAAATGAGTTGTCTTAAA
AGCCTTGTTGGTAAACTCAACGTCTGGATTGGCAGTAATTTTATAGATCT
GATGAATTGGCTCAATAAATGTTATGAAGTTTTTAAA

Coding sequence (CDS) from alignment at scaffold_11131:3..4089+

>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGATCAATATT
ATGAGCGATATGTAACTCTAGTCAAAGTGAATTACTTCGTACAATTCTAC
TGGTTGATGTGGAGGAACATACAAGCGTTGAAGCGTAACTACACTATATG
GATAGCCGAGTTCTTGCTGCTCATGTTCGTAGGTCTGATAATCTCAGTTC
CCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGACATTCAGAACGTG
GAGGGTCTCCTCTACCTCACGATTACAGAAACGATATTCCTCTTCATATA
CGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATACTGCTTCGGGAGA
CCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTGTCGAAGATGATA
TTCTGGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTAT
ATTCTTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCA
ACTTCGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGCTCATTC
CTATCGGCGACGTTCAACTCAATGGAAACAGCTGCATTGGTATCTGTACC
TTTCGACCTGATTGGCACAATGTTTTCTGGTCTATACTTAAACTTAGCTA
GCGTCACACCGTACATATCATGGCTTAGATTCGTATCAGGTTTCTACTAT
GGCGTTGAAAGCATCTCTATACTCCAATGGGATTCCATCGAGACCATTGA
GTGTGTACAAATCGATGGCATGCCTTGTATAAAGACAGGCCCTGAGGTGT
TGAGAAGGTTTGGTTTTGCTGAAGAGCATTTTTGGCGTAACTGCATCTGT
TTGTTTAGTATGTACTGCATAGCTCATTTCATAGCCTTCCTTATGGTCAT
GAAGAGAAGTAGGGGCACTCCTGTATACTAG