Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Full name | SFRICE002614 |
eAED | 0.00 |
QI | 224|1|1|1|0.66|0.5|4|324|553 |
AED | 0.00 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SFRICE002614-RA-five_prime_UTR | SFRICE002614-RA-five_prime_UTR-5 | Spodoptera frugiperda rice | five_prime_UTR | SFRU_RICE_002397 33420..33630 + |
SFRICE002614-RA-five_prime_UTR | SFRICE002614-RA-five_prime_UTR-6 | Spodoptera frugiperda rice | five_prime_UTR | SFRU_RICE_002397 35562..35574 + |
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
SFRICE002614-RA-three_prime_UTR | SFRICE002614-RA-three_prime_UTR-10 | Spodoptera frugiperda rice | three_prime_UTR | SFRU_RICE_002397 38441..38764 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE002614-RA ID=SFRICE002614-RA|Name=SFRICE002614-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2210bp|location=Sequence derived from alignment at SFRU_RICE_002397:33420..38764+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
CCAAGGTTAACAAGTTCCCGCGTATATACCTGTATCTAGTCTGTTATTTA GTTTATGTGTTCAAGGCGTAATGACGTGCGTGATTATGTGAATTTAATTG TTTTTCCGCCGGCATCCATTGAACCAATTTAACAACAATAACAAATGAAC AACAAAGAAGGAATTTATATAAAACTTGTATCGTACTAAACATTTGTTCG TCTGTAGAAACGCTAACAATAAAAATGGCGGATATACCGGACGAAGCGAA ATGCATAGTGCAAACAGAAGACGGTCCTATTTGTGGATATTGTGAAAAGA CTGACGAAGGTATTTGTTACAAGTTTAAAAGTATACCGTATGCTAAACCA CCAGTAGGCCAGTTGAGATTCCTGCCCCCAACTCCAATACCACCATGGAC AGAAGTACTAGACTGTACGAAAGACGCTCCAATGCCTATCTGCCGATCAG TTTACGATTGCATCAGTGGATCAGAAGACTGCCTGTACATTGAGCTCTCT ACACCAAGTCTTAACCCTGAAAAACCATTACCAGTAATGTTTTGGATAGG AGGGTATGGCTACACATCTGTCCTAGACCCCATATTAGATGCCACGTTGC TCAATTACCAAAATGTTATATTCGTAAGGTGTGGCCACAGAACGGGTCCT TTTGGATTCCTCTCCATAAATGACTACGCTGCACCAGGAAACTGCGGACT CAAGGACGTAGTAATGGCCCTAAAATGGGTCCAACGAAACATAAGCACCG TTGGCGGTGACCCAAACAATGTCACAATTTTCGGAGGCTCTTCAGGGGGA GCCATGGTCAACTTTATGATGTTATCACCAATGGCCACTGGATTGTTTCA CAAACTCATCATACAGAGTGCCAGTGTTTTGAATAACTGGTCCTTAGCAA AGAACCCTTCACAAGGTGTTATAGAACTGGCAAAAATACTCGGCATTAAG AAGTCATCCAAGCAGGAAATCGTTGAGGAGTTACGAAGGATCCCCGCCGT GGATATCACCGAAGCTTTTCGAAACTTCAATGTTGGGTTTAGCGAAGGTG TCGAAAGCGATTTATTTGATTCTGTATTCAAACCCTGTATTGAAGTAGAC CTGGAAGGACAAGCTTCATTTATCACAAAGAGTCCAATAGTAATTCTAAA ATCTGGTAATTTTAATAAAGTACCTTGTATTATCGGAAGTAATAACATAG AGGGTGCAGTTTTGCAATACGTTGTAGACAATTTTTGTTCAAATTTTGAA AGGTATACTGATAATATCAAATTGCTTGTGCCTCGAGAACTGGCGAGGAG AGACAGAATGTCTGACAATATAGCCCATCAGATACTGAAGTTTTATTTAG ATGGAGAAGAACATTTGAGTGAAAAAAATAGAAGCCAGTATTTGCAATTG ATTAGTGATTATTACTTTTTATATTATGTTAATAAAACTGTGAGACTACT GTGTGAATTTGCGCCCTCGGTTCCAATATATTACTACATACTGAACTATG CTGGAGAATGGGCAGTGCCTGAGAGGTTAAATTTCTTCAACTCTACTGGG CATGGAGCGGAGTTACCGTTCCTGTTTCGTATCAAAATGCCAGAAGTCTG CAAGGGTAGTCCAGATTCAATAACTACTAGGACAAGAGTGATCAAAATGT GGACTAATTTCGCTAAAACAGGAAACCCAACACCAGATCCAGACGACCCA CTGCTCTGGATAACTTGGGACCCAGTGGAGAGCAAAGAAAAAATAAATTA TCTCAGTATAGGACAAGAGTTGACGAAGGGTAGGAACCCCTTTCAAGAAC GAATGAAGTTTTGGGACGAACTGCATAAGGAACACATGTTTTTAAGAGCT TTAGTACACTTTAATGACTCGGGATATTCTGTATAAAATTAGCATCAGCC TGTAATTGCCCTTATGTGCAAAGGTCTCTTCTCACACGGAGAAAGAATGA GCATTAATCACCACGCTTGGCTAAGACGGATCGGTGATTTCAAGTATATA ATTTGAAATTGCACAGTTTTTTTAACGTATGTCAGTGATAGTTACATTGG AAAAAGTGACGTTGATCGGTATTCTGCCAGGTATTGAATCCGTATCCTCA TTAGAAAAGCAGATACTGAAGACAATATTATTAGGTATAATATTATTATA ATGTTTAAACATTTTGTGATGATCTGAAATTATTTTTGCGTCCCAATATA CAATGTAAAC back to topprotein sequence of SFRICE002614-RA >SFRICE002614-PA ID=SFRICE002614-PA|Name=SFRICE002614-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=554bp
MADIPDEAKCIVQTEDGPICGYCEKTDEGICYKFKSIPYAKPPVGQLRFL PPTPIPPWTEVLDCTKDAPMPICRSVYDCISGSEDCLYIELSTPSLNPEK PLPVMFWIGGYGYTSVLDPILDATLLNYQNVIFVRCGHRTGPFGFLSIND YAAPGNCGLKDVVMALKWVQRNISTVGGDPNNVTIFGGSSGGAMVNFMML SPMATGLFHKLIIQSASVLNNWSLAKNPSQGVIELAKILGIKKSSKQEIV EELRRIPAVDITEAFRNFNVGFSEGVESDLFDSVFKPCIEVDLEGQASFI TKSPIVILKSGNFNKVPCIIGSNNIEGAVLQYVVDNFCSNFERYTDNIKL LVPRELARRDRMSDNIAHQILKFYLDGEEHLSEKNRSQYLQLISDYYFLY YVNKTVRLLCEFAPSVPIYYYILNYAGEWAVPERLNFFNSTGHGAELPFL FRIKMPEVCKGSPDSITTRTRVIKMWTNFAKTGNPTPDPDDPLLWITWDP VESKEKINYLSIGQELTKGRNPFQERMKFWDELHKEHMFLRALVHFNDSG YSV. back to topmRNA from alignment at SFRU_RICE_002397:33420..38764+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE002614-RA ID=SFRICE002614-RA|Name=SFRICE002614-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=5345bp|location=Sequence derived from alignment at SFRU_RICE_002397:33420..38764+ (Spodoptera frugiperda rice) CCAAGGTTAACAAGTTCCCGCGTATATACCTGTATCTAGTCTGTTATTTA
GTTTATGTGTTCAAGGCGTAATGACGTGCGTGATTATGTGAATTTAATTG
TTTTTCCGCCGGCATCCATTGAACCAATTTAACAACAATAACAAATGAAC
AACAAAGAAGGAATTTATATAAAACTTGTATCGTACTAAACATTTGTTCG
TCTGTAGAAACGTAAGTTATTTTTTTTTATAATAATAAATGGTGTTTGTT
TATATAGGTGCCTTAAGCATGTACTTTGAGTGTATTATTTTCCTACAATA
CTGTTTTTATATTATTAATTTTCCTGTTATGTTCCAATTGTATTAAACAG
AAAGAGATGACAAACATGTGTGTTTGTGAAAAGATTGTCTACCTACTAAG
AATTTGTACAATATTTCTAAAATTACGGAAAATGCTACTTAAAATTCCAT
ATTTTTTGTGATAAATGCAATGGATTCTTACGTGCTACTGTTATCAAAGT
TAAATATAGACTTTAGTTACGTCTGTTATCACTGCGAGGTTATTTAATGT
TCTCAATTCTCATTGCTTGGTTTTATAAAACGTATTGTTAAATTAAAATA
GATACTCTATTCATCTCATTGGTTTTAAATTAAACAATACCAAAATAAGT
TTGACGTCACAGGTTTAACTTTAACGCAAGTTTGATTAACCAGAATACAT
AAACAGTTTGACATTATGAAAATAAATAAATTAGGTAGATGTACTGTAGG
CAGCTAAGTAGTCGTTAACATGGCTCTACACCGTAAATTTAAGCATACCT
ACTTACTTATGTATCTAGCTAATATCTACTTATTATTTATTTAGACACAG
ATAATAAATAATGAGTTTGTTTCGGCATTTCTTCTCAGATTGTCCGATAG
GAAATGCCGGTCTCATCTAGTTATTTAAGAGATTGACGTGTAAAAGAGTT
CATTAAAGTAATGTTTCTAAGAAAAATCTAAGAGCTTTAGGGTCGTTTGA
GAGTCGATTAAGTAACACAAGTTACTTTATTTTAATTTCCTAAGGGATTC
AGATTGAGACTCACGCAAACAAAATTACTTACGAGTAAAGACTTACTAAA
CAAATATATTTATTTAATCCAATAACTATAGACAGTAGAGAATATTAGAT
CTAAGACTGCCAATAGAAAACTGTTGAAGGCAAATCCTCCGCTAACGTCG
GTCACCGGTGACCACGACGGCGTTCAATGTATTAAACGTTAAACACTATC
TACCGCACTTAGAGACATTTAATGATTACTTAAAATTATTCCTTAGTAAC
GATTTTGTATCGAAAACAATCTGAAGGTCTGATTTAAGTATTGTTTGTTT
CGTTTGAATTTGTTACTAGGAATCCAATCCCCATTGTGACGTCCGATCCC
ATTAAATAACTCTGAGGCGGCAGCATAATATTTAATCGATAAACAAGTCT
AATAAATATTAGTTTATAGAACGAAAGACAATCTGTATAAAGTCAAGGTT
TTTTACGGAACATCAATGGCTATAAACATAACACAACATAAGCTAATCAC
AATTCTAATAATAGCCGACTCGTACCTACATATTTTTTTTCGTATAGGCA
TAGAGTAAAAAAAAATCCGATTGGTTTATAAAACTGGATATGCATGGCCA
ATGTGGCCATAGATAATATTGTATTCTTAATTTGTTTTTATCATCGACTA
CATTGTGTTTTTTTTATTAGCCAATCTGTGATGTGTATTATTTTTCTCTT
GAATTATTTTATATATTAATTATGAAATACTGAATTATTACAAAAGTAAT
TTATTATTAATGGTTATTAATAGATATTTTTACATTATTAATTTACATTT
TCCCTAAAAGGGCAATGATATCATCGCGACATTCTTATTTATGTCTGAAA
TATTCATTAGCTACGAAATATTTTGTTTATACCAACTTTTAATATATTAA
TAAATGTACCTAACTACTAAGTAAAATTTCCGAGAAATATTCCAATAGGT
AATATTATTTCTTGTAGATAACATAACTTGTACTGCATATAACATAATTA
AGTCTACCCGATCTGACTTAAAACTTAGTCGACATAGCTCACCAGCTCAC
AAAAAATATTATCAAAATTGATTTTTAATTAAAATTTTCCAGGCTAACAA
TAAAAATGGCGGATATACCGGACGAAGCGAAATGCATAGTGCAAACAGAA
GACGGTCCTATTTGTGGATATTGTGAAAAGACTGACGAAGGTATTTGTTA
CAAGTTTAAAAGTATACCGTATGCTAAACCACCAGTAGGCCAGTTGAGAT
TCCTGGTAAGTCATACATCAGACCTCTAGGCTATTCTATAATTTCCAATT
CGAAACATTCGAGGTGAGTTTGATCGCAGAGCCACGTCAATGGTTGTGAG
ATTATTCTCGACCAATGATGGAAGAGAATACGATCGATCTCACTTCAAAT
ATTTCGAATTGACAATTACAGAATAACCTAGCTGACACATACGACCACTT
TCGAGCTAATTCCTTTTAAATTATTAGAGTCTATTTTTCTATTTAAATAA
TCTTCTTATTTAAATAAAAATACCGTTTAAATGTAATATAATATAGGATA
TGATCAACTAATTTCCAAAACTTGAAACATAGAAGAATATTTGTATTGAC
TATCTTTCTATTCCTATGTTTTTAAAACGGTAATGCCGACAGAGTAGGAA
CAAAAAACCATATTTAGTGTCAACATAGTCTTCATTTAGACATAAATAGG
ACTTGTTATTATTATAAATAACAGTTGCAAGTAAGTACTTGCACAGTTAA
CTACATTTTATTTGTGTGCAGTTATTTGTAGGTTATTTATATTTAATTAC
ACGCCACCTGTAGAAGGTAATTAGTTGTGTTTATGTATATTGTACTTCAC
TTGCGTCAGAATATTGACGTAAAGGTACCTACTGTTACACATGCTCTAAA
ATAAGCATGCTTAAAGGCATTCCATTGAGCATTCTCAAAAATGTACAAAA
TTCGAACGCCTGTCGTTTCGCAAACGTGCCCGAAATAAACTTGCTAATTT
AGCATGTGAACAATACCTAAAGTATAAGATATTATTTTTTCCGGAGGCGA
TCGAAGGGTAAATTGGCCCAGCAGGGCGGATGCTGCCCGATATCTCTGCT
TCAGTCAATATTTGAATATAATTTGACATTATTAATTTCAGACGATCACC
TTAATATTTTAAAAAGACATTTATTTTATCGTATGTTTCCAGCCCCCAAC
TCCAATACCACCATGGACAGAAGTACTAGACTGTACGAAAGACGCTCCAA
TGCCTATCTGCCGATCAGTTTACGATTGCATCAGTGGATCAGAAGACTGC
CTGTACATTGAGCTCTCTACACCAAGTCTTAACCCTGAAAAACCATTACC
AGTAATGTTTTGGATAGGAGGGTATGGCTACACATCTGTCCTAGACCCCA
TATTAGATGCCACGTTGCTCAATTACCAAAATGTTATATTCGTAAGGTGT
GGCCACAGAACGGGTCCTTTTGGATTCCTCTCCATAAATGACTACGCTGC
ACCAGGAAACTGCGGACTCAAGGACGTAGTAATGGCCCTAAAATGGGTCC
AACGAAACATAAGCACCGTTGGCGGTGACCCAAACAATGTCACAATTTTC
GGAGGCTCTTCAGGGGGAGCCATGGTCAACTTTATGATGTTATCACCAAT
GGCCACTGGATTGTTTCACAAACTCATCATACAGAGTGCCAGTGTTTTGA
ATAACTGGTCCTTAGCAAAGAACCCTTCACAAGGTGTTATAGAACTGGCA
AAAATACTCGGCATTAAGAAGTCATCCAAGCAGGAAATCGTTGAGGAGTT
ACGAAGGATCCCCGCCGTGGATATCACCGAAGCTTTTCGAAACTTCAATG
TTGGGTTTAGCGAAGGTGTCGAAAGCGATTTATTTGATTCTGTATTCAAA
CCCTGTATTGAAGTAGACCTGGAAGGACAAGCTTCATTTATCACAAAGAG
TCCAATAGTAATTCTAAAATCTGGTAATTTTAATAAAGTACCTTGTATTA
TCGGAAGTAATAACATAGAGGGTGCAGTTTTGCAATACGTTGTAGACAAT
TTTTGTTCAAATTTTGAAAGGTATACTGATAATATCAAATTGCTTGTGCC
TCGAGAACTGGCGAGGAGAGACAGAATGTCTGACAATATAGCCCATCAGA
TACTGAAGTTTTATTTAGATGGAGAAGAACATTTGAGTGAAAAAAATAGA
AGCCAGTATTTGCAATTGATTAGTGATTATTACTTTTTATATTATGTTAA
TAAAACTGTGAGACTACTGTGTGAATTTGCGCCCTCGGTTCCAATATATT
ACTACATACTGAACTATGCTGGAGAATGGGCAGTGCCTGAGAGGTTAAAT
TTCTTCAACTCTACTGGGCATGGAGCGGAGTTACCGTTCCTGTTTCGTAT
CAAAATGCCAGAAGTCTGCAAGGGTAGTCCAGATTCAATAACTACTAGGA
CAAGAGTGATCAAAATGTGGACTAATTTCGCTAAAACAGGGTAAGGTTTA
GTGTACCTAATGTTTCCAAAAAGTAATTTCTAGGTTCGTTTTCTTGTTGC
GTTCCATATTTAATTTGGGTTCGTTTACTAGTTCACATTTGTTTCTAGTA
TTCTAGGCTAGACTACTACTGCACAGAAATATGATAGTTTGGCAATTTTT
AAATACTCATTAATTTTACTACCTACTGAAAATTCATTTCATCTACGTCA
ATAATTCGAAAGAACTTCTTTTTTTTACTAATTCTTAACTTATAATTAAA
ATTTCAGAAACCCAACACCAGATCCAGACGACCCACTGCTCTGGATAACT
TGGGACCCAGTGGAGAGCAAAGAAAAAATAAATTATCTCAGTATAGGACA
AGAGTTGACGAAGGGTAGGAACCCCTTTCAAGAACGAATGAAGTTTTGGG
ACGAACTGCATAAGGAACACATGTTTTTAAGAGCTTTAGTACACTTTAAT
GACTCGGGATATTCTGTATAAAATTAGCATCAGCCTGTAATTGCCCTTAT
GTGCAAAGGTCTCTTCTCACACGGAGAAAGAATGAGCATTAATCACCACG
CTTGGCTAAGACGGATCGGTGATTTCAAGTATATAATTTGAAATTGCACA
GTTTTTTTAACGTATGTCAGTGATAGTTACATTGGAAAAAGTGACGTTGA
TCGGTATTCTGCCAGGTATTGAATCCGTATCCTCATTAGAAAAGCAGATA
CTGAAGACAATATTATTAGGTATAATATTATTATAATGTTTAAACATTTT
GTGATGATCTGAAATTATTTTTGCGTCCCAATATACAATGTAAAC back to topCoding sequence (CDS) from alignment at SFRU_RICE_002397:33420..38764+ >SFRICE002614-RA ID=SFRICE002614-RA|Name=SFRICE002614-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1662bp|location=Sequence derived from alignment at SFRU_RICE_002397:33420..38764+ (Spodoptera frugiperda rice) ATGGCGGATATACCGGACGAAGCGAAATGCATAGTGCAAACAGAAGACGG TCCTATTTGTGGATATTGTGAAAAGACTGACGAAGGTATTTGTTACAAGT TTAAAAGTATACCGTATGCTAAACCACCAGTAGGCCAGTTGAGATTCCTG CCCCCAACTCCAATACCACCATGGACAGAAGTACTAGACTGTACGAAAGA CGCTCCAATGCCTATCTGCCGATCAGTTTACGATTGCATCAGTGGATCAG AAGACTGCCTGTACATTGAGCTCTCTACACCAAGTCTTAACCCTGAAAAA CCATTACCAGTAATGTTTTGGATAGGAGGGTATGGCTACACATCTGTCCT AGACCCCATATTAGATGCCACGTTGCTCAATTACCAAAATGTTATATTCG TAAGGTGTGGCCACAGAACGGGTCCTTTTGGATTCCTCTCCATAAATGAC TACGCTGCACCAGGAAACTGCGGACTCAAGGACGTAGTAATGGCCCTAAA ATGGGTCCAACGAAACATAAGCACCGTTGGCGGTGACCCAAACAATGTCA CAATTTTCGGAGGCTCTTCAGGGGGAGCCATGGTCAACTTTATGATGTTA TCACCAATGGCCACTGGATTGTTTCACAAACTCATCATACAGAGTGCCAG TGTTTTGAATAACTGGTCCTTAGCAAAGAACCCTTCACAAGGTGTTATAG AACTGGCAAAAATACTCGGCATTAAGAAGTCATCCAAGCAGGAAATCGTT GAGGAGTTACGAAGGATCCCCGCCGTGGATATCACCGAAGCTTTTCGAAA CTTCAATGTTGGGTTTAGCGAAGGTGTCGAAAGCGATTTATTTGATTCTG TATTCAAACCCTGTATTGAAGTAGACCTGGAAGGACAAGCTTCATTTATC ACAAAGAGTCCAATAGTAATTCTAAAATCTGGTAATTTTAATAAAGTACC TTGTATTATCGGAAGTAATAACATAGAGGGTGCAGTTTTGCAATACGTTG TAGACAATTTTTGTTCAAATTTTGAAAGGTATACTGATAATATCAAATTG CTTGTGCCTCGAGAACTGGCGAGGAGAGACAGAATGTCTGACAATATAGC CCATCAGATACTGAAGTTTTATTTAGATGGAGAAGAACATTTGAGTGAAA AAAATAGAAGCCAGTATTTGCAATTGATTAGTGATTATTACTTTTTATAT TATGTTAATAAAACTGTGAGACTACTGTGTGAATTTGCGCCCTCGGTTCC AATATATTACTACATACTGAACTATGCTGGAGAATGGGCAGTGCCTGAGA GGTTAAATTTCTTCAACTCTACTGGGCATGGAGCGGAGTTACCGTTCCTG TTTCGTATCAAAATGCCAGAAGTCTGCAAGGGTAGTCCAGATTCAATAAC TACTAGGACAAGAGTGATCAAAATGTGGACTAATTTCGCTAAAACAGGAA ACCCAACACCAGATCCAGACGACCCACTGCTCTGGATAACTTGGGACCCA GTGGAGAGCAAAGAAAAAATAAATTATCTCAGTATAGGACAAGAGTTGAC GAAGGGTAGGAACCCCTTTCAAGAACGAATGAAGTTTTGGGACGAACTGC ATAAGGAACACATGTTTTTAAGAGCTTTAGTACACTTTAATGACTCGGGA TATTCTGTATAA back to top
Synonyms
The feature 'SFRICE002614-RA' has the following synonyms
Synonym |
SFRICE002614-PA |
SFRICE002614 |
maker-SFRU_RICE_002397-augustus-gene-0.22-mRNA-1 |
|