SFRICE003205.2-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	SFRICE003205.2-RA
Unique Name	SFRICE003205.2-RA
Type	mRNA
Organism	Spodoptera frugiperda rice (Fall armyworm - rice variant)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
CYP315A1	SFRICE003205.2	Spodoptera frugiperda rice	gene	SFRU_RICE_004101 10646..15069 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA	SFRICE003205.2-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_004101 10646..14960 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 10646..10819 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 11054..11461 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 11790..12020 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 12124..12267 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 12335..12526 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-6	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 14592..14813 +
SFRICE003205.2-RA-exon	SFRICE003205.2-RA-exon-7	Spodoptera frugiperda rice	exon	SFRU_RICE_004101 14940..15069 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 10646..10819 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 11054..11461 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 11790..12020 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 12124..12267 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 12335..12526 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-6	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 14592..14813 +
SFRICE003205.2-RA-CDS	SFRICE003205.2-RA-CDS-7	Spodoptera frugiperda rice	CDS	SFRU_RICE_004101 14940..14960 +

The following non_canonical_five_prime_splice_site feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA-non_canonical_five_prime_splice_site	SFRICE003205.2-RA-non_canonical_five_prime_splice_site-19	Spodoptera frugiperda rice	non_canonical_five_prime_splice_site	SFRU_RICE_004101 10820..10820 +
SFRICE003205.2-RA-non_canonical_five_prime_splice_site	SFRICE003205.2-RA-non_canonical_five_prime_splice_site-20	Spodoptera frugiperda rice	non_canonical_five_prime_splice_site	SFRU_RICE_004101 11462..11462 +
SFRICE003205.2-RA-non_canonical_five_prime_splice_site	SFRICE003205.2-RA-non_canonical_five_prime_splice_site-21	Spodoptera frugiperda rice	non_canonical_five_prime_splice_site	SFRU_RICE_004101 12021..12021 +
SFRICE003205.2-RA-non_canonical_five_prime_splice_site	SFRICE003205.2-RA-non_canonical_five_prime_splice_site-22	Spodoptera frugiperda rice	non_canonical_five_prime_splice_site	SFRU_RICE_004101 12268..12268 +
SFRICE003205.2-RA-non_canonical_five_prime_splice_site	SFRICE003205.2-RA-non_canonical_five_prime_splice_site-23	Spodoptera frugiperda rice	non_canonical_five_prime_splice_site	SFRU_RICE_004101 14814..14814 +

The following non_canonical_three_prime_splice_site feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA-non_canonical_three_prime_splice_site	SFRICE003205.2-RA-non_canonical_three_prime_splice_site-1	Spodoptera frugiperda rice	non_canonical_three_prime_splice_site	SFRU_RICE_004101 11054..11054 +
SFRICE003205.2-RA-non_canonical_three_prime_splice_site	SFRICE003205.2-RA-non_canonical_three_prime_splice_site-2	Spodoptera frugiperda rice	non_canonical_three_prime_splice_site	SFRU_RICE_004101 11790..11790 +
SFRICE003205.2-RA-non_canonical_three_prime_splice_site	SFRICE003205.2-RA-non_canonical_three_prime_splice_site-3	Spodoptera frugiperda rice	non_canonical_three_prime_splice_site	SFRU_RICE_004101 12124..12124 +
SFRICE003205.2-RA-non_canonical_three_prime_splice_site	SFRICE003205.2-RA-non_canonical_three_prime_splice_site-4	Spodoptera frugiperda rice	non_canonical_three_prime_splice_site	SFRU_RICE_004101 14940..14940 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE003205.2-RA-UTR	SFRICE003205.2-RA-UTR-1	Spodoptera frugiperda rice	UTR	SFRU_RICE_004101 14961..15069 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_004101:10646..15069+
coding sequence from alignment at SFRU_RICE_004101:10646..15069+

spliced messenger RNA

>SFRICE003205.2-RA ID=SFRICE003205.2-RA|Name=SFRICE003205.2-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1501bp|location=Sequence derived from alignment at SFRU_RICE_004101:10646..15069+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGCAACAGAAATAAGACTTTATTAAAACTTATCAAATTCAAATT
CAATAAGCGTTTATTACACGATGTTGCTCCAGCACCCAAGTCTATTGAAT
TTATGCCGCGTCCAAAATCTCTGCCTATTGTGGGAACTAAATTGGATTTC
ATAGCTGCTGGAGGTGGTTCAAAGTCTAGATTGCACGAGTATGTCGATAT
TCGTCACAAACAATTAGGTTCCATCTTTTGTGACAAATTAGGAGGAAGTG
TAGATTTAGTATTTGTTAGTGATCCCGCACTAATAAAAACACTATTTCTA
AATCTTGAAGGAAAGTATCCCATACATATATTACCAGAGCCATGGGAATT
GTATGAAAAGCTTTATGGTTCTAAAAGAGGCTTATTTTTCATGAATGGGG
AGGAATGGTTAGAAAATCGAAGAGTTGTGAATAAATATTTATTGAAAGAA
AATTCTGAAAAATTATTCGATAATCCAGTTAAAAATACTATCAACCAAAT
GATACAGAAATGGACAACTGAGGCAAAGAAGGGCTCTTATGTGCCAAACT
TAGAGAGCGAATTTTATCGACTATCTATTGATTATTTTCTTTTTGTTACA
GTGATAATATCAGCAATGTTAGGCAGTTCTACCTTCCATAAGTTTAGCGC
ACACAGTGATGCTTTATTGACTGCATTTGCGGAAGAAGTAAAAAAAATAT
TTCAGACCACAACCAAATTGTATGGTTGGCCTGTTAACATGTGCCAGAAG
CTGAATTTAAAAGTTTGGAGGGATTTCAAAAATTCTGTTGATATATCATT
ATTCCTAGGTAATGCTAACAAAATTGTCGAAGAAATGATAAATAAGAAAC
AACCCAAAGACGGACTGATTAATCTTCTTATTGAAGAAAATCTCAAACCA
GAAATCATAAAAAGGATTATCGTTGATTTTGTCATCGCTGCTGGTGATAC
GGTAAGTACGTCTTATACCACAATATGGACATTGTATCTATTGTCTAAGA
ACAAAGATGTGAGACAGGAACTATTTAAAAGAAATTCTATTATAAACTAT
GCGATAAAGGAATCTATGAGATTATATCCTGTTGCACCGTTTTTGACAAG
GATTCTGCCCAAAGAATGCATCTTCGGAGCTTACAAACTTAAAGGAGGCA
CTCCAATAATAGTTTCCATTTATACATCTGGAAGAGATGAGCAATACTTT
AGTAGAGCTACAGAATACCTGCCTTACCGCTGGGACCGCAATGATGAAAG
GAGGAAACATCTTGTGAATCATGTGTCTTCTGCTTCATTACCATTTGCTC
TTGGGGCCCGGTCATGTATAGGTAAAAAGCTAGCAATGCTACAAATGACA
GAACTTATAACTCAGGTAAACTCAGATGGTACAAAACTTTGATTTTGAAT
GTATTAATAAAGATGAAGTTACTTCCAAAACTTCTCAGGTACTTGTACCT
AGTCAAGAAATCAAGTTATCTTTCTCGTTGAGAAAACCGGAATGTGCTGA
A

protein sequence of SFRICE003205.2-RA

>SFRICE003205.2-PA ID=SFRICE003205.2-PA|Name=SFRICE003205.2-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=464bp
MISNRNKTLLKLIKFKFNKRLLHDVAPAPKSIEFMPRPKSLPIVGTKLDF
IAAGGGSKSRLHEYVDIRHKQLGSIFCDKLGGSVDLVFVSDPALIKTLFL
NLEGKYPIHILPEPWELYEKLYGSKRGLFFMNGEEWLENRRVVNKYLLKE
NSEKLFDNPVKNTINQMIQKWTTEAKKGSYVPNLESEFYRLSIDYFLFVT
VIISAMLGSSTFHKFSAHSDALLTAFAEEVKKIFQTTTKLYGWPVNMCQK
LNLKVWRDFKNSVDISLFLGNANKIVEEMINKKQPKDGLINLLIEENLKP
EIIKRIIVDFVIAAGDTVSTSYTTIWTLYLLSKNKDVRQELFKRNSIINY
AIKESMRLYPVAPFLTRILPKECIFGAYKLKGGTPIIVSIYTSGRDEQYF
SRATEYLPYRWDRNDERRKHLVNHVSSASLPFALGARSCIGKKLAMLQMT
ELITQVNSDGTKL.

mRNA from alignment at SFRU_RICE_004101:10646..15069+

Legend: polypeptideexonCDSnon_canonical_five_prime_splice_sitenon_canonical_three_prime_splice_siteUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE003205.2-RA ID=SFRICE003205.2-RA|Name=SFRICE003205.2-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=4424bp|location=Sequence derived from alignment at SFRU_RICE_004101:10646..15069+ (Spodoptera frugiperda rice)
ATGATTAGCAACAGAAATAAGACTTTATTAAAACTTATCAAATTCAAATT
CAATAAGCGTTTATTACACGATGTTGCTCCAGCACCCAAGTCTATTGAAT
TTATGCCGCGTCCAAAATCTCTGCCTATTGTGGGAACTAAATTGGATTTC
ATAGCTGCTGGAGGTGGTTCAAAGTAAGGATTTTGTACTATTAACAAGAT
TTAATTGAATGTTAAATGAAATTTAATTTGTTAATTAACAAAGTTTGTAA
AACAGAAAATCATGACTGACTATACTATAGGTCCCTAGTCGGCCAAAGAG
TATAATAAGTAAGTATTAGTGACATTGACATCATGTGCCATTATGTTCAT
CCCTTCGGGGATAAAAAGCGTGATGATATGAATAAAATATTTTTGTATGT
TTTCATTTTCTAGATTGCACGAGTATGTCGATATTCGTCACAAACAATTA
GGTTCCATCTTTTGTGACAAATTAGGAGGAAGTGTAGATTTAGTATTTGT
TAGTGATCCCGCACTAATAAAAACACTATTTCTAAATCTTGAAGGAAAGT
ATCCCATACATATATTACCAGAGCCATGGGAATTGTATGAAAAGCTTTAT
GGTTCTAAAAGAGGCTTATTTTTCATGAATGGGGAGGAATGGTTAGAAAA
TCGAAGAGTTGTGAATAAATATTTATTGAAAGAAAATTCTGAAAAATTAT
TCGATAATCCAGTTAAAAATACTATCAACCAAATGATACAGAAATGGACA
ACTGAGGCAAAGAAGGGCTCTTATGTGCCAAACTTAGAGAGCGAATTTTA
TCGACTATCTATTGATGGTAAGTTTAATATTATTACAAATAAGCTTTTTA
AATATGGTATTTAAAATAAGTAGAACGTAATTTATTATTAGGTAATGTAA
TTTGCCCACGATTCTTTTTATGTTAAACTTGGACTAGGTTGTTCTCCTGG
GTCATGAGTGCATTATAAACATGTAATTTCACATACACATGACACCCAGA
CCTGACACGACAATTTGTCGACACAAAGAGTTGCTCCTTGCGGGAGTCGC
ACCTGCGTTGTGTGGCAGCCGCTGCACCGTTGCTTACTTATTTTGAAATC
AACCGATTTAAAAATAAGTAGGTAAGTAACAGGGGTAGGCTACTTATTTT
CTTTTTGTTACAGTGATAATATCAGCAATGTTAGGCAGTTCTACCTTCCA
TAAGTTTAGCGCACACAGTGATGCTTTATTGACTGCATTTGCGGAAGAAG
TAAAAAAAATATTTCAGACCACAACCAAATTGTATGGTTGGCCTGTTAAC
ATGTGCCAGAAGCTGAATTTAAAAGTTTGGAGGGATTTCAAAAATTCTGT
TGATATATCATTATTCCTAGGTAATTCTTATATGATATTGATCTACTTAA
TTCATATTTAAATTGACTTAATACGATGATGATTATGATTATGATGAACA
AGAAAATATACATTCTTGACCTATTTCAGCTAACAAAATTGTCGAAGAAA
TGATAAATAAGAAACAACCCAAAGACGGACTGATTAATCTTCTTATTGAA
GAAAATCTCAAACCAGAAATCATAAAAAGGATTATCGTTGATTTTGTCAT
CGCTGCTGGTGATACGGTAAGTACTTATTAACGATTATTTTACTTTTGTG
TGTTAATTTAAAATGGAGACTTATTTAAGGTATTTTCAGACGTCTTATAC
CACAATATGGACATTGTATCTATTGTCTAAGAACAAAGATGTGAGACAGG
AACTATTTAAAAGAAATTCTATTATAAACTATGCGATAAAGGAATCTATG
AGATTATATCCTGTTGCACCGTTTTTGACAAGGATTCTGCCCAAAGAATG
CATCTTCGGAGCTTACAAACTTAAAGGAGGCGTGAGTAGTTTATTTATGA
AGTTTTATCAATATGATTTTGTCGTAAACTTAAAACGTATATACTAATAG
AATTACGTGGTAACATGTCCATTTACTAAATTGATTGCCGTGTTGGTTAA
GTGATCGCAAGCGCGACTGTCAAGTGTTAAGCATAGGTTCAATTTCTGGG
TTAGCTAAAGCATTTTCAGGGTTTTAGAATTTTCAAATATTCTCCACGTT
CCATGACGTCTGAACTGGAAAGGTCAGGAAAAACTCTTCTTCCCTTTTAC
GTTTTCAAAATTACTGGTGAATTGTCGCAGTTATATTTGGTATATTACGC
ATTTACTCTAATAGTTTGATACAACTACTATTACTAGGCTTAAAGCTACA
TCGTACGTGCGGCCCCCGTAACAAAAGAAAAGACGACTTTTTTAAAGTGC
CCATTTTTTTATTTTATTAATAGAACAACTTCTAAAGATAAATTATTTAA
TGATTTTATTCCTTCTTCTTAGATATACACTAAAAAAAAAAATATAACAT
TTCCCGTGTCGAATTTGGAAGTTATGCTGTACCTACTCTGTTTTGGACTT
AGACGAAATAAATCAAATAGACAAAAAAAACAAGAATCCTTAATCTATTT
TTTTTCTTGAATAGCAACCGAGATCCTTAATCTATGTTTTTGAACAAGAT
TTTTGTTGACATTGACAATGTCAATAATATTTTTTGACACAATTGAAAAT
ATTTGACAAATTGAAATTGACATTTGTTGTTATTGTATTCCATCTATGGA
AGATAGGTTATGTTATACAACTTAAACTAAATAAAATAACTAACGAAATT
AAATACTTCTTTCAAAATGTTAATATACAATTGTATTACGAAGTTAAGAT
TTAGCCCTACATTACAAACCTATCGGAAATTTAGTGCAATTTGTTGCAAT
CATAGCGAAGCAAAAAATGAAAACAAAGTGTATAAACATAAATTATTCAA
TAAAGACAAGTTTAATTCTGTGGATGTACACATTCGAAGAAATATTTCAA
TGGAAGGATTTCTAAAATGGCAAGAACAAACGTACGCTAGTATATCTGGT
AGCACGCCGGTACATTTTATGCAGGATAGTTTACTCTATTTCCATGATAT
CACAGGAATGTCATGGTGGGCCACAATTGTAACATCTACGATACTAATAA
GATCGCTTATGACTTTACCACTGTCTGTATATCAAAACTATATATTGGCT
AAAGTTGAAAACATCAGTCTGGAGTTAAAAGATTTGGTCAATGAATTAAA
AAAAGAAACATCAATAGCAAAGAAAGCCTACAATTTAACAGACAAGCAAG
CAGTAATATTGTACAAACGGTCATTGAAAAAACAATGGAACAATCTAATA
GTGAGAGATAACTGCCACCCCTTCAAAGCTAGTTTATTAATTTGGTTCCA
AATCCCAATTTGGGTGTGCATGTCATTTGCTTTGAGGAATCTAGTATATA
TGGCTGATGCAGACCCTGCAGCATTAGTGACATTTATGGAATTATCTGCA
GGTGGCATAGGATGGATACCCAATTTAACTGAACCAGACCATTCATGGAT
TCTACCTGTAGCATTTGGATTGACCAACTTATCTATTATTGAAATACAGA
GGTTATCTAAGCTAAGACAACCATCTAAGCTGTACAATGTTTTTACAAAT
GTCTTCAGAGTATTTACAGTAATAATGATACCTGTAGCTGCCAATGTGCC
ATCATGTATGTGTCTGTACTGGATGACCTCAAGTAGTATTGGCTTAGTTC
ACAACTTGATCCTACTATCACCTTCATTAAGAAGAAAACTCAGGATACCT
TTAGCTCCAAGTGAACTTGAAGAACCTTATAAACATATAAGACAAGAATT
AAAACATTCTTATAAAAATGTGTTAAATAGAATTATACCAAAAGAATCAT
AATATTTTCTTTTATTTTTACATTCACCTGGTTCCCTTAATCTAGTATGT
TTGTGTTGAAGTTTATAGGTATGTTAAACACATTTCCTATTAGAAACTCA
TTTATTGTGATTGTTTTTTATTTATCAAAATATTTACGATTTACAGACTC
CAATAATAGTTTCCATTTATACATCTGGAAGAGATGAGCAATACTTTAGT
AGAGCTACAGAATACCTGCCTTACCGCTGGGACCGCAATGATGAAAGGAG
GAAACATCTTGTGAATCATGTGTCTTCTGCTTCATTACCATTTGCTCTTG
GGGCCCGGTCATGTATAGGTAAAAAGCTAGCAATGCTACAAATGACAGAA
CTTATAACTCAGGTAAACACCCATTTTTAAAATATTTAAATTATTCCAAC
ATGGGATCTCATGTTTTATTAATTTTTTATTCCAATTCTGAGATTTTTTG
CCACTTGATTCTATCATAGATAGCAATATATTTTATTTTTTGTTTCAGAT
GGTACAAAACTTTGATTTTGAATGTATTAATAAAGATGAAGTTACTTCCA
AAACTTCTCAGGTACTTGTACCTAGTCAAGAAATCAAGTTATCTTTCTCG
TTGAGAAAACCGGAATGTGCTGAA

Coding sequence (CDS) from alignment at SFRU_RICE_004101:10646..15069+

>SFRICE003205.2-RA ID=SFRICE003205.2-RA|Name=SFRICE003205.2-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1392bp|location=Sequence derived from alignment at SFRU_RICE_004101:10646..15069+ (Spodoptera frugiperda rice)
ATGATTAGCAACAGAAATAAGACTTTATTAAAACTTATCAAATTCAAATT
CAATAAGCGTTTATTACACGATGTTGCTCCAGCACCCAAGTCTATTGAAT
TTATGCCGCGTCCAAAATCTCTGCCTATTGTGGGAACTAAATTGGATTTC
ATAGCTGCTGGAGGTGGTTCAAAGTCTAGATTGCACGAGTATGTCGATAT
TCGTCACAAACAATTAGGTTCCATCTTTTGTGACAAATTAGGAGGAAGTG
TAGATTTAGTATTTGTTAGTGATCCCGCACTAATAAAAACACTATTTCTA
AATCTTGAAGGAAAGTATCCCATACATATATTACCAGAGCCATGGGAATT
GTATGAAAAGCTTTATGGTTCTAAAAGAGGCTTATTTTTCATGAATGGGG
AGGAATGGTTAGAAAATCGAAGAGTTGTGAATAAATATTTATTGAAAGAA
AATTCTGAAAAATTATTCGATAATCCAGTTAAAAATACTATCAACCAAAT
GATACAGAAATGGACAACTGAGGCAAAGAAGGGCTCTTATGTGCCAAACT
TAGAGAGCGAATTTTATCGACTATCTATTGATTATTTTCTTTTTGTTACA
GTGATAATATCAGCAATGTTAGGCAGTTCTACCTTCCATAAGTTTAGCGC
ACACAGTGATGCTTTATTGACTGCATTTGCGGAAGAAGTAAAAAAAATAT
TTCAGACCACAACCAAATTGTATGGTTGGCCTGTTAACATGTGCCAGAAG
CTGAATTTAAAAGTTTGGAGGGATTTCAAAAATTCTGTTGATATATCATT
ATTCCTAGGTAATGCTAACAAAATTGTCGAAGAAATGATAAATAAGAAAC
AACCCAAAGACGGACTGATTAATCTTCTTATTGAAGAAAATCTCAAACCA
GAAATCATAAAAAGGATTATCGTTGATTTTGTCATCGCTGCTGGTGATAC
GGTAAGTACGTCTTATACCACAATATGGACATTGTATCTATTGTCTAAGA
ACAAAGATGTGAGACAGGAACTATTTAAAAGAAATTCTATTATAAACTAT
GCGATAAAGGAATCTATGAGATTATATCCTGTTGCACCGTTTTTGACAAG
GATTCTGCCCAAAGAATGCATCTTCGGAGCTTACAAACTTAAAGGAGGCA
CTCCAATAATAGTTTCCATTTATACATCTGGAAGAGATGAGCAATACTTT
AGTAGAGCTACAGAATACCTGCCTTACCGCTGGGACCGCAATGATGAAAG
GAGGAAACATCTTGTGAATCATGTGTCTTCTGCTTCATTACCATTTGCTC
TTGGGGCCCGGTCATGTATAGGTAAAAAGCTAGCAATGCTACAAATGACA
GAACTTATAACTCAGGTAAACTCAGATGGTACAAAACTTTGA