Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Full name | SFRICE006035 |
| eAED | 0.42 |
| QI | 84|1|1|1|1|1|3|452|538 |
| AED | 0.42 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE006035-RA-five_prime_UTR | SFRICE006035-RA-five_prime_UTR-4 | Spodoptera frugiperda rice | five_prime_UTR | SFRU_RICE_002768 42755..42838 + |
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE006035-RA-three_prime_UTR | SFRICE006035-RA-three_prime_UTR-8 | Spodoptera frugiperda rice | three_prime_UTR | SFRU_RICE_002768 45025..45476 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2153bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
TATATTTATGGAGCGGCGTCGTGTATCGTTTCAGTCATTATTATTTTGCC
GCGGTGTACACTTGTGAACATAAGTGTGGAGAACATGGTGCAAGTGAGAG
TGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCAGAATGAGTTCGGAGGG
TCGTTCTACAGGTTCAGAGGAATACCGTACGCCCAGCCACCTCTTGGAGA
TCTCCGGTTTAAGGCACCGCAACCAATTAAACCATGGCAAGGTGTACGGC
AAGCCAAACAATTTGGCCCAGTGTGTTACCAGTTCAACCCCACCAACCCT
GGACTATCAAACATGAGTGAAGACTGCTTATACGTGAATGTTTATACTCC
AGACGTTAAGCCTCAAACCCCTCTACCTGTAATGGTTTGGATCCACGGAG
GAGGATACGTATGGGGAAGTGGCAATGACGACCTCTACGGCCCAGAATTT
CTAATCAGACATAATGTAGTTCTAGTCACATTCAACTACAGACTCGAAGT
TCTCGGCTTTCTTTGCCTTGACACTGCAGACGTTCCAGGCAATGCTGGCA
TGAAAGATCAAGTAGCAGCCCTCAGATGGGTCAAAAGAAACATTGCCAAC
TTTGGAGGCAACCCTGACAACATCACAATATTTGGTGAAAGTGCCGGTGC
TGGTAGTGTTTCACATCATTTAATATCCCCAATGTCAAAGGGCCTCTTCA
ACAGAGCAATCCCACAGAGTGGAGCCACCACATGTTTTTGGGCTACAGCA
TTCGAACCAAAAGAAAAAGCCATACTTCTCGCTAAACAACTGGGTTTTCA
TTCAGAGGACGAAAAAGAACTATATGAATTCTTCAAAAAACAGCCGTGTG
AAAATCTGGTCAACTTAAAATTACAAGTAACGACATCACAGAAGTCTTAT
GAGATTCATTTCAGTATTGCAAATGAGAAAGATTTTGGACAGGAAAGATT
TTTCTATGGCGATTTCGTCGACGCAATGAAAAACAATTTGCAGGAAGGTG
TAGACATTATGACGGGTTACACAAAGGACGAGTGTACGATATCGATATCC
ATCGGTGGACCACTGGAAGACATTCTTGCAAAAGCTCAGAGATACCGGGA
ATTTTTCGCTCCCAAACTGATACAGAACTTCGGGACGATAACTGACCAGT
TAGAAGCTGCACGGAAGCTACAAAAGTTTTATTTCAAAAACGAGAGAGTA
TCGAAAGACAATATTGATACTTTAATGAAATACATAAGTGTTGATATGTT
CGTCCATGGCGTGATGTTGGCTGCGAAGTTCTATTCAAGGAAGAATAAAG
TTTACTTTTACAAATTCAATTGTTACTCAGAGAGGAATGTCTTCACGGAT
GCCTTTTGCGTCGGCCATCTGAACGAAGGCCGGGAAGTAGTAAGTCATGC
GGATGATTTGGCATATCTCTTCCCAGTGAAACTTTTCACGCAAAAAGTTG
ATAAAACATCGGACACATTCAAACTGATTGACAGGGTCACTAAACTTTGG
ACAAACTTCGCCAAATACGGAAACCCGACTCCAGATAACAGCTTAGGAGT
GAAATGGCTCCCATACACCTTAGCAGCTCAGGACTATATGGACATTGGTG
ACAAGCTGATCCCTGGTCATTCACCAGACCAGGAAGAACTTGACTTCTGG
GAGTCTATATTTCAACAGTACCTGCCTAAATTCAGTATGTTAAACAAATA
ATTCACCACAATAGTGCCAACACAACAAGCTATACCAAACTGTTGTTAAC
AGATTTTCAAATCTATTTCTATGATGATAAAGTTGAAAATGTTTTGGGTT
AGTTTCATATGCTTGCGTCTTGTGTAGTGCTAAGAACTAATTTTGTTTTT
GTTTTATAGTAAGAAAAGTCTTTACTTGATAGGATTTGTTAAAAGACTAA
CTCTAATTAATATAAATATCTATAATATAATTAATATATTGTTACAAGTA
AATATGTTGAAGTAAGTGTTACGTACCATGTAATTTCAAATAATATAATA
TGTTATCTTAATGACTAACATAAATTAATAAAGTGGAATACGTCAATAGA
TCATTCATTATAGTATTATCTACAATAATAAAATTTATTGAATGTATACC
ATCAAAAGATATAACATAGAATTCAAATTTACTTGATTTTATTTTACATG
CAT back to topprotein sequence of SFRICE006035-RA >SFRICE006035-PA ID=SFRICE006035-PA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=539bp
MVQVRVSDGLLEGEQVQNEFGGSFYRFRGIPYAQPPLGDLRFKAPQPIKP
WQGVRQAKQFGPVCYQFNPTNPGLSNMSEDCLYVNVYTPDVKPQTPLPVM
VWIHGGGYVWGSGNDDLYGPEFLIRHNVVLVTFNYRLEVLGFLCLDTADV
PGNAGMKDQVAALRWVKRNIANFGGNPDNITIFGESAGAGSVSHHLISPM
SKGLFNRAIPQSGATTCFWATAFEPKEKAILLAKQLGFHSEDEKELYEFF
KKQPCENLVNLKLQVTTSQKSYEIHFSIANEKDFGQERFFYGDFVDAMKN
NLQEGVDIMTGYTKDECTISISIGGPLEDILAKAQRYREFFAPKLIQNFG
TITDQLEAARKLQKFYFKNERVSKDNIDTLMKYISVDMFVHGVMLAAKFY
SRKNKVYFYKFNCYSERNVFTDAFCVGHLNEGREVVSHADDLAYLFPVKL
FTQKVDKTSDTFKLIDRVTKLWTNFAKYGNPTPDNSLGVKWLPYTLAAQD
YMDIGDKLIPGHSPDQEELDFWESIFQQYLPKFSMLNK. back to topmRNA from alignment at SFRU_RICE_002768:42755..45476+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2722bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)
TATATTTATGGAGCGGCGTCGTGTATCGTTTCAGTCATTATTATTTTGCC
GCGGTGTACACTTGTGAACATAAGTGTGGAGAACATGGTGCAAGTGAGAG
TGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCAGAATGAGTTCGGAGGG
TCGTTCTACAGGTTCAGAGGAATACCGTACGCCCAGCCACCTCTTGGAGA
TCTCCGGTTTAAGGTAGGAATACTGAAATATTCGCAGTTATTTTTTTTTT
CGCAAAAAAGTGAATAAAAAATTTAATTGTTCTCTCAATACTTTTGAAAT
TTGTGAAAATAAAGAAAAGTCTTAATCATTATAACTTCAATTAGACCAAT
AATAAGGCCCTTTAGAAAGTCAACCAATATTTTCTGGTGATAAAAAAATA
CGAATTGAAGCCTAAGCAATATAAAATTGTTACAGGCACCGCAACCAATT
AAACCATGGCAAGGTGTACGGCAAGCCAAACAATTTGGCCCAGTGTGTTA
CCAGTTCAACCCCACCAACCCTGGACTATCAAACATGAGTGAAGACTGCT
TATACGTGAATGTTTATACTCCAGACGTTAAGCCTCAAACCCCTCTACCT
GTAATGGTTTGGATCCACGGAGGAGGATACGTATGGGGAAGTGGCAATGA
CGACCTCTACGGCCCAGAATTTCTAATCAGACATAATGTAGTTCTAGTCA
CATTCAACTACAGACTCGAAGTTCTCGGCTTTCTTTGCCTTGACACTGCA
GACGTTCCAGGCAATGCTGGCATGAAAGATCAAGTAGCAGCCCTCAGATG
GGTCAAAAGAAACATTGCCAACTTTGGAGGCAACCCTGACAACATCACAA
TATTTGGTGAAAGTGCCGGTGCTGGTAGTGTTTCACATCATTTAATATCC
CCAATGTCAAAGGGCCTCTTCAACAGAGCAATCCCACAGAGTGGAGCCAC
CACATGTTTTTGGGCTACAGCATTCGAACCAAAAGAAAAAGCCATACTTC
TCGCTAAACAACTGGGTTTTCATTCAGAGGACGAAAAAGAACTATATGAA
TTCTTCAAAAAACAGCCGTGTGAAAATCTGGTCAACTTAAAATTACAAGT
AACGACATCACAGAAGTCTTATGAGATTCATTTCAGTATTGCAAATGAGA
AAGATTTTGGACAGGAAAGATTTTTCTATGGCGATTTCGTCGACGCAATG
AAAAACAATTTGCAGGAAGGTGTAGACATTATGACGGGTTACACAAAGGA
CGAGTGTACGATATCGATATCCATCGGTGGACCACTGGAAGACATTCTTG
CAAAAGCTCAGAGATACCGGGAATTTTTCGCTCCCAAACTGATACAGAAC
TTCGGGACGATAACTGACCAGTTAGAAGCTGCACGGAAGCTACAAAAGTT
TTATTTCAAAAACGAGAGAGTATCGAAAGACAATATTGATACTTTAATGA
AATACATAAGTGTTGATATGTTCGTCCATGGCGTGATGTTGGCTGCGAAG
TTCTATTCAAGGAAGAATAAAGTTTACTTTTACAAATTCAATTGTTACTC
AGAGAGGAATGTCTTCACGGATGCCTTTTGCGTCGGCCATCTGAACGAAG
GCCGGGAAGTAGTAAGTCATGCGGATGATTTGGCATATCTCTTCCCAGTG
AAACTTTTCACGCAAAAAGTTGATAAAACATCGGACACATTCAAACTGAT
TGACAGGGTCACTAAACTTTGGACAAACTTCGCCAAATACGGGTGAGTGA
AATATCTTTTTTATCTTTTCAGTGGACCGTCTAATGTGCTCAATCGCTCT
GAGATAAAAATAATCTCATTTTATGACATTCGAATATCTATCAATTGATT
TAGATTGTGCGATAGAAAAAGATTTCCTTTAAATATTAAGAAAGTGTTTC
AAACATATTTTTAACGACTATAGGTAAAAGTTCAAATGTAACTAAAGTCC
ACAGTAATCTCTTTCAAAATGAGCCCACAACTAAAAATCAACTATATCTA
ATAGAAAATAAAACATAAATTTTCATTCACAATACCATACACACCATCTT
TTAAGAATAACACCAACATTCTGTTTTCTTTGTCAATAGAAACCCGACTC
CAGATAACAGCTTAGGAGTGAAATGGCTCCCATACACCTTAGCAGCTCAG
GACTATATGGACATTGGTGACAAGCTGATCCCTGGTCATTCACCAGACCA
GGAAGAACTTGACTTCTGGGAGTCTATATTTCAACAGTACCTGCCTAAAT
TCAGTATGTTAAACAAATAATTCACCACAATAGTGCCAACACAACAAGCT
ATACCAAACTGTTGTTAACAGATTTTCAAATCTATTTCTATGATGATAAA
GTTGAAAATGTTTTGGGTTAGTTTCATATGCTTGCGTCTTGTGTAGTGCT
AAGAACTAATTTTGTTTTTGTTTTATAGTAAGAAAAGTCTTTACTTGATA
GGATTTGTTAAAAGACTAACTCTAATTAATATAAATATCTATAATATAAT
TAATATATTGTTACAAGTAAATATGTTGAAGTAAGTGTTACGTACCATGT
AATTTCAAATAATATAATATGTTATCTTAATGACTAACATAAATTAATAA
AGTGGAATACGTCAATAGATCATTCATTATAGTATTATCTACAATAATAA
AATTTATTGAATGTATACCATCAAAAGATATAACATAGAATTCAAATTTA
CTTGATTTTATTTTACATGCAT back to topCoding sequence (CDS) from alignment at SFRU_RICE_002768:42755..45476+ >SFRICE006035-RA ID=SFRICE006035-RA|Name=SFRICE006035-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1617bp|location=Sequence derived from alignment at SFRU_RICE_002768:42755..45476+ (Spodoptera frugiperda rice)
ATGGTGCAAGTGAGAGTGAGCGATGGTTTGCTCGAGGGGGAACAGGTCCA
GAATGAGTTCGGAGGGTCGTTCTACAGGTTCAGAGGAATACCGTACGCCC
AGCCACCTCTTGGAGATCTCCGGTTTAAGGCACCGCAACCAATTAAACCA
TGGCAAGGTGTACGGCAAGCCAAACAATTTGGCCCAGTGTGTTACCAGTT
CAACCCCACCAACCCTGGACTATCAAACATGAGTGAAGACTGCTTATACG
TGAATGTTTATACTCCAGACGTTAAGCCTCAAACCCCTCTACCTGTAATG
GTTTGGATCCACGGAGGAGGATACGTATGGGGAAGTGGCAATGACGACCT
CTACGGCCCAGAATTTCTAATCAGACATAATGTAGTTCTAGTCACATTCA
ACTACAGACTCGAAGTTCTCGGCTTTCTTTGCCTTGACACTGCAGACGTT
CCAGGCAATGCTGGCATGAAAGATCAAGTAGCAGCCCTCAGATGGGTCAA
AAGAAACATTGCCAACTTTGGAGGCAACCCTGACAACATCACAATATTTG
GTGAAAGTGCCGGTGCTGGTAGTGTTTCACATCATTTAATATCCCCAATG
TCAAAGGGCCTCTTCAACAGAGCAATCCCACAGAGTGGAGCCACCACATG
TTTTTGGGCTACAGCATTCGAACCAAAAGAAAAAGCCATACTTCTCGCTA
AACAACTGGGTTTTCATTCAGAGGACGAAAAAGAACTATATGAATTCTTC
AAAAAACAGCCGTGTGAAAATCTGGTCAACTTAAAATTACAAGTAACGAC
ATCACAGAAGTCTTATGAGATTCATTTCAGTATTGCAAATGAGAAAGATT
TTGGACAGGAAAGATTTTTCTATGGCGATTTCGTCGACGCAATGAAAAAC
AATTTGCAGGAAGGTGTAGACATTATGACGGGTTACACAAAGGACGAGTG
TACGATATCGATATCCATCGGTGGACCACTGGAAGACATTCTTGCAAAAG
CTCAGAGATACCGGGAATTTTTCGCTCCCAAACTGATACAGAACTTCGGG
ACGATAACTGACCAGTTAGAAGCTGCACGGAAGCTACAAAAGTTTTATTT
CAAAAACGAGAGAGTATCGAAAGACAATATTGATACTTTAATGAAATACA
TAAGTGTTGATATGTTCGTCCATGGCGTGATGTTGGCTGCGAAGTTCTAT
TCAAGGAAGAATAAAGTTTACTTTTACAAATTCAATTGTTACTCAGAGAG
GAATGTCTTCACGGATGCCTTTTGCGTCGGCCATCTGAACGAAGGCCGGG
AAGTAGTAAGTCATGCGGATGATTTGGCATATCTCTTCCCAGTGAAACTT
TTCACGCAAAAAGTTGATAAAACATCGGACACATTCAAACTGATTGACAG
GGTCACTAAACTTTGGACAAACTTCGCCAAATACGGAAACCCGACTCCAG
ATAACAGCTTAGGAGTGAAATGGCTCCCATACACCTTAGCAGCTCAGGAC
TATATGGACATTGGTGACAAGCTGATCCCTGGTCATTCACCAGACCAGGA
AGAACTTGACTTCTGGGAGTCTATATTTCAACAGTACCTGCCTAAATTCA
GTATGTTAAACAAATAA back to top
Synonyms
The feature 'SFRICE006035-RA' has the following synonyms
| Synonym |
|---|
| SFRICE006035-PA |
| SFRICE006035 |
| augustus_masked-SFRU_RICE_002768-processed-gene-0.10-mRNA-1 |
|