Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Full name | SFRICE008490 |
eAED | 0.06 |
QI | 0|0|0|1|0.66|0.5|4|0|582 |
AED | 0.05 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE008490-RA ID=SFRICE008490-RA|Name=SFRICE008490-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1749bp|location=Sequence derived from alignment at SFRU_RICE_021459:11320..17352- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
ATGTGTTCAGTACCAGAAGATGTAAAATGCATTGTTGAAACAAAAGATGG ACCTATATGTGGATATATTGATAAAAACGATGAGGGAACTTATTATAAAT TTAGTGGTATACCATATGCCAAACCACCCCTTGGTCGCTTGAGATTTATG CCTCCATCTCCTATCGAACCATGGGAAAAAGTTCGAGATTGTACTGAGAA ACAACCCCTACAGCTATGCTGTGTCTTAAATAAAAGTATAGAAGGTTCAG AGGATTGCCTCTATATTGAAATCTCAACCCCTAATATAAAGTCTGAAACA CCTATGCCAGTTATGTTTTGGATAGGAAGTTATGGATTCACAGGCATCAT GGATCAACTATTTGATGCTACTCTCATCAATAATGAAAATGTCGTATTTG TAAGGTGCGGCTTCCGATTAGGACCATTTGGCTTCCTTTCTATCAATGAC TTTACAGCACCGGGTAATTGTGGCCTAAAGGATTTAGTCATGGCTTTAAA ATGGGTACAAAGAAATATATCTGTATTTGGAGGTGATCCAGACAATGTCA CCATTTTTGGAAGTTCTTCAGGTGGAGCTATGGTCCATCTCATGATGTTA TCCCCAATGGCTACTGGTCTTTTCCACAAAGCAATTATACAAAGCGCAAG TGCATTGAACAATTGGTCTTTAACCAAAAACCCCTCTCTAGCTGTCATAG AACTAGCAAATGAATTGAACATCCAGAAAACGAATAAAGTAGAAATAATT GAAGAGCTGAGGACTTTACCTGCGTTAGATATAATGCAGGCATTTCATAA TATGGCATTAAGAACACAAAAGGCTGCCAATCATGATATCATTGATTCAA TCTTTAAACCATGTATCGAAGTTGACTTTGAAGGTCAACCTGCATTCCTT ACAAAAAGCCCTCTTCTAATTCTGAAATCTGGAAACTTCAACAAAGTGCC TTTAATCATTGGTAGTAATAATATTGAAGCTGCATTATTGGAATTCATTA AAGAAGATTTTTATTCTGACTATGAAAAGTTTAATGAGAACACCAGTCTT ATCGTACCTAGATCGATCGCTAGAGAAGACAAAGTAACAAAAAGTATAGG TCAACAATTACTAAAGTTCTATTTGGGTGGTGAAGAACACCTTACGGCCG AAACTAGAACACAGTACTTGCAATTAATAAGTGATTATTATTTCTTATAT TATGTCAATAGGACTGTAAGAATGCATAGTCAGTCTGCACCAGAATCCCC AGTGTACTATTATATTGTCAACTATGCTGGCGAGTGGTCAGTACCTACAG ACATCAATTTTTTGAACTCTCCCGGGCATTGCGCCGAGCTACCTTTCATA TTCCGTATTAAAATGCCAGAAATTTGCAAGGGTAGTCGAGATTCGGTGAT CACAAGAAGCAGAGTAATCAAACTGTGGACAAATTTTGCCAAAACCGGCA ATCCAACTCCTAATGAAGATGACCCTCTCTTACAAATAACTTGGGATCCC GTTGAAAATAAGGATAAATTAAACTATCTGAGCATAGGATCCGAACTTAC AAAAGGCAGGAATCCGTTTTATGAGAGAATGAAGTTTTGGGACTCTCTTC ATCAAGAACATGCATTTCTTAGAACAATTGTCTATTTTAATGATATAGGC AAAAATATCTTGATTACTAGCAACCCGCCTCAGCTTCGCATGGGTGCAAT GGTGATAAATTATGCCTGTACTATATATACATTAAAATCTTCCCCTTGA back to topprotein sequence of SFRICE008490-RA >SFRICE008490-PA ID=SFRICE008490-PA|Name=SFRICE008490-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=583bp
MCSVPEDVKCIVETKDGPICGYIDKNDEGTYYKFSGIPYAKPPLGRLRFM PPSPIEPWEKVRDCTEKQPLQLCCVLNKSIEGSEDCLYIEISTPNIKSET PMPVMFWIGSYGFTGIMDQLFDATLINNENVVFVRCGFRLGPFGFLSIND FTAPGNCGLKDLVMALKWVQRNISVFGGDPDNVTIFGSSSGGAMVHLMML SPMATGLFHKAIIQSASALNNWSLTKNPSLAVIELANELNIQKTNKVEII EELRTLPALDIMQAFHNMALRTQKAANHDIIDSIFKPCIEVDFEGQPAFL TKSPLLILKSGNFNKVPLIIGSNNIEAALLEFIKEDFYSDYEKFNENTSL IVPRSIAREDKVTKSIGQQLLKFYLGGEEHLTAETRTQYLQLISDYYFLY YVNRTVRMHSQSAPESPVYYYIVNYAGEWSVPTDINFLNSPGHCAELPFI FRIKMPEICKGSRDSVITRSRVIKLWTNFAKTGNPTPNEDDPLLQITWDP VENKDKLNYLSIGSELTKGRNPFYERMKFWDSLHQEHAFLRTIVYFNDIG KNILITSNPPQLRMGAMVINYACTIYTLKSSP. back to topmRNA from alignment at SFRU_RICE_021459:11320..17352- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE008490-RA ID=SFRICE008490-RA|Name=SFRICE008490-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=6033bp|location=Sequence derived from alignment at SFRU_RICE_021459:11320..17352- (Spodoptera frugiperda rice) ATGTGTTCAGTACCAGAAGATGTAAAATGCATTGTTGAAACAAAAGATGG
ACCTATATGTGGATATATTGATAAAAACGATGAGGGAACTTATTATAAAT
TTAGTGGTATACCATATGCCAAACCACCCCTTGGTCGCTTGAGATTTATG
GTAAGTCACATATTTTTAAATCACTTTATTTACAATTACCTAAGTCAACA
TTATCATCAGCTTATAAGTGCCCACTGCTGAGCAAAAGTCTATTTTCACA
TGTGAAGGAATGGGATATAGTCACCAATTTCAAAGTTACAATTTAGTAGT
TTAATTAATGTTAAATTAAATCAGACAAATCATCACTTTAGTATTCTTAA
TTTCGGAGCTGCGGACTACCTAGTGGGTTTACCGGGGCTCCGGCTCGAAA
AGCAGGAGAAGGAACGGGGTGGTTTTTAGTCAGTAAGAGTCTGACACTCC
CTGTCGAAAAAAAAAATACAAAAAAAAAGTATCCTTAATTTAGGTAGGTA
AGTAGGTAGACTATACCTAGTATTTATAAAACTGGAGATGATTTTGTATG
TAATTAAATTCTATAAACAATATTTGAACTGGAACTGACCATGTTGTTTT
CTTAAATATAAATAGCTTATCTGTGATTATGTTACACTTAATTTATTATC
ATAATAAATTAGCAATCATCATTACAGAGCCAATCAAATAAATAAAAACA
AACTGATACAATAATTCACATTTATGGTACAACACATATTTTTACAGATT
TTGTATTTATATACTAGCCTGGTATAAAATATGTAGTATAATAATAATTA
TGATAGATAATGTACTTTCATCTTGTAATCTTGATTTCTTACCAGCCATG
TAGATTTGTAAGCACACATTTGTAACTATACTTTTTATTACATCACTGAT
TTATTTACTTTCTTTGCAGCCTCCATCTCCTATCGAACCATGGGAAAAAG
TTCGAGATTGTACTGAGAAACAACCCCTACAGCTATGCTGTGTCTTAAAT
AAAAGTATAGAAGGTTCAGAGGATTGCCTCTATATTGAAATCTCAACCCC
TAATATAAAGTCTGAAACACCTATGCCAGTTATGTTTTGGATAGGAAGTT
ATGGATTCACAGGCATCATGGATCAACTATTTGATGCTACTCTCATCAAT
AATGAAAATGTCGTATTTGTAAGGTGCGGCTTCCGATTAGGACCATTTGG
CTTCCTTTCTATCAATGACTTTACAGCACCGGGTAATTGTGGCCTAAAGG
ATTTAGTCATGGCTTTAAAATGGGTACAAAGAAATATATCTGTATTTGGA
GGTGATCCAGACAATGTCACCATTTTTGGAAGTTCTTCAGGTGGAGCTAT
GGTCCATCTCATGATGTTATCCCCAATGGCTACTGGTCTTTTCCACAAAG
CAATTATACAAAGCGCAAGTGCATTGAACAATTGGTCTTTAACCAAAAAC
CCCTCTCTAGCTGTCATAGAACTAGCAAATGAATTGAACATCCAGAAAAC
GAATAAAGTAGAAATAATTGAAGAGCTGAGGACTTTACCTGCGTTAGATA
TAATGCAGGCATTTCATAATATGGCATTAAGAACACAAAAGGCTGCCAAT
CATGATATCATTGATTCAATCTTTAAACCATGTATCGAAGTTGACTTTGA
AGGTCAACCTGCATTCCTTACAAAAAGCCCTCTTCTAATTCTGAAATCTG
GAAACTTCAACAAAGTGCCTTTAATCATTGGTAGTAATAATATTGAAGCT
GCATTATTGGAATTCATTAAAGAAGATTTTTATTCTGACTATGAAAAGTT
TAATGAGAACACCAGTCTTATCGTACCTAGATCGATCGCTAGAGAAGACA
AAGTAACAAAAAGTATAGGTCAACAATTACTAAAGTTCTATTTGGGTGGT
GAAGAACACCTTACGGCCGAAACTAGAACACAGTACTTGCAATTAATAAG
TGATTATTATTTCTTATATTATGTCAATAGGACTGTAAGAATGCATAGTC
AGTCTGCACCAGAATCCCCAGTGTACTATTATATTGTCAACTATGCTGGC
GAGTGGTCAGTACCTACAGACATCAATTTTTTGAACTCTCCCGGGCATTG
CGCCGAGCTACCTTTCATATTCCGTATTAAAATGCCAGAAATTTGCAAGG
GTAGTCGAGATTCGGTGATCACAAGAAGCAGAGTAATCAAACTGTGGACA
AATTTTGCCAAAACCGGGTAATTATTTAATTTTAATCATTGTGTCTATTA
TATTCATTTATTTGTCACGATTGTTTAACATATTTCTTTATGTACATGTT
AAATGCTGCCACACTTGTTCAAATATCCGTTTATGTAATAACAATAATAC
AACAGGAAAAGTATATCTATATTTTATTGGTTTTGAGTCTGTTTAATACA
AAGTTAATATTGCATAAATACTCCCTGTATTCACAATGAATGTATAATGA
GAATTCATTTTTATTTGCAGCAATCCAACTCCTAATGAAGATGACCCTCT
CTTACAAATAACTTGGGATCCCGTTGAAAATAAGGATAAATTAAACTATC
TGAGCATAGGATCCGAACTTACAAAAGGCAGGAATCCGTTTTATGAGAGA
ATGAAGTTTTGGGACTCTCTTCATCAAGAACATGCATTTCTTAGAACAAT
TGTCTATTTTAATGATATAGGTATTTCATGGTAAACAATACAACTACAAT
TTGTAGCTGTATTTAGACTCATTCAAACCTCCATAATATAAGAATAATAT
ATTGTTTGGCCTTTGGTCTATTTGTAACTGTAAGTTATATTATTGCAAGT
AATTTTACACTACTTTATACAATAAATATTTAAGTTGTTTTATTGTTTGA
CTAAAGTTTACTATTTTTATACTAAAATGAATTCCCCTATCTTTTCATAC
AAAATACAAAACATAAACTTCCCCTGACTTGTATAAGAACTGCAAAAGAA
AGGAACAGGACTGAAAATTAAATGACATTTTTTGTTGGTACCAATCTGTA
ATATAGCATGAAATGATACTTTCACATAACAATATACAAGTTTAATTATT
TTAGTAACAAAAGCATCAAGGCCAACAAATACAATACATACTACAAAATA
AATGAACTAGATACGCCATTATCTACAGTAAAAAAATAAGAAGGCGAATT
CCTTTGTTAATTATATAAATTAATAAAATAATCTATACATAATGGGTGCA
TAATATAATTACATACACATTGTGTAGATAGTTTGATCTGAAAACAGTTA
ATTCAACGAAGTTGTAGATACTACCCACTTCTGTATACACATAGATATCT
GAAAAAAGAAATTTTCTTCAGTCACAATGAAGCAAAATAGTAAATGTGTT
TTGTTACATGGTGAAAATAAAATAAGTTGGTCATATAGTGGTCAAACATA
TTTTATTTCCAATATTGCTGAGTAAGCATATTGCCTATGTATTACAAAGC
TGATATTGTCAGTATTGGTCAATATACCTATACATGGTATGCTAACTACT
ATACATACACAAAACTATGATCTCACTTTTAATAAGCACTTTGATTTCAA
TAAACATAGATGTTACCAGGTGAATTTTAGTTTTATCCATAACCCATTGT
AATTTTAATTATCTAATCCAAGTATTCCATGGGTTCTATGTCATAAGCAC
TAAATTAATTTATGATAATTATTGCATTTAAATATGTATAAATAGGAAAT
ACGTGTAGTGGTTCTATCTACATAACATTATCTTAGTTTAATAATAAAGT
CGATTCTTACGACATGAAATGAGTTCTAATATTATAATGGTTATTAGATG
AACCCCGCAATACATGTCACTATCATAACATTTCCTTAATTCCTTATAGT
GTAATTTACTGGTAGAATTGTGATACATTTTGTAAGATACTTAGAGCCAG
CGCTCTCTACCGACAAGGCACGCAGCGGCATTCTGATAAAAGCCCAGTAA
TTCTGCCATGACCACTGAGCAACCTTATTTTAACTAGATCAGTGATCATA
ATTCCACGACACAAAGTGACACATCAGACGTGATACAATGGCGTGCTGCG
CAATCTGTGGAATAAAACGGCATGCAACGACACGTCGTGGCATCGTAGTA
TTAATATAAAGTACAGTAGAAGCTCCTTATTCGCGGGGTACGCGTTCCGT
AAATATGCCGCGAATACAGAAAACGTGAATATGGAATGGTAATTTGTATG
GGGTTATAGGGGATACGTTCCTAGATGACGAAATTAAGAAGCAAATAGTA
GATAAAAAAAATGTTTAATTGAACTTTCTGGTCATACAGATTGCCTGATA
ATAATATTATTATCATTAGGTTTAGGTCACACTAGGTTTAGGCAGAAGTC
ACAATCTAGACGTAGCTGTAATAAGGTCTATTTTTTTTTTATCCTTCTAC
TGACGCGTTGACAAAGGATAGCGAATGTATTTTTTTAGGTTACGCACCGA
TATTTCGAATCGATCCGCGAATAAAGAAATTTTAGACCGCGAATATGGGA
ATTGGGTCGCAATTTTTCAATCCGCGAATAGTGAAACCGCGAATGAAGGA
AGCGCGAATAAGGAGCTTCTACTGTAATATGAATTCTAAACCCATTGAAA
TAAGAACTAAAATAAACTTGATTAGTGATAAAATCCTTTTCCATGCCACG
CCATACCGTGCCGGCAGTCAACGCTAGTTCTTTTTGCATAGCATTTAAGA
GCACAAAATGGCATAATGTCTATTTTATTTTACTTTTCCCCCAAGTCATA
ATTGCTGTGACCAAACTTTAAGATACTAATTTTCTACTCGGATTTCAATT
AAAATTTCGATTTAACAAAAAGCAGTATAATATATAAATAATATTAACTT
CCTTAGGAACTAAAAGATCATGGAAACAAGCTATAGTAGTTATCAGCGCC
ACAGCGTTAAATATAAAAGCTCAAATAATAGATTGATAAAATTTAGATTT
AAATCAAACTTTGAATTCCATATTTGTGAACTAAAGAAACAATAAATTTA
CAAAACATTACAACATAATTATACTCACTGCACGGTCAGCATCAATATAA
AGTATAATTATAAGCCTAGGTTAGAATTGGAAGCCACCCATAGGAACCGA
CTGATCGGTACTGAATTGATATTGGTCCGTAGTAGACGACACCGCAGGTG
CAGTTCTGCCATCCTCTTCTTCAGATCCAAAATAGTTCTCAATAATCTCG
AAAGATTTTTGATAAATGTCAAGGTTTTCATGTGACTGGAGAAATTCTAT
CTTATCCAAACCTGAAATAAGCAAAATTTTGTATTAACCCTAGAGAAAAT
AATCTAAAATGTTTTTTGAAGTGCCTGCATAATCTATATAAATCTTTCTC
TCTCTAATCTCGCTGAAACTCGAGAACGGCTGGACCAATTTGGCAAATCC
AAGGAAGGTTTAAAAGGTGAGAAGCTAATGTTTGAGGTGGTACGAAGTTA
GCCGGGTCAGCTAGTGAAACATAAATAAATGACGAGAAATGTGAGAGAAC
TTACCAAAGCACTCTTCAATGAGGACGGCATAAGGATTGTCTCGTTGGTC
AGCTTGTTGTCCTGCCTTTAAAATATTGTCTAATCCATTTAGAGCCACTT
GAACGGTCTTGGCGTCCGTTAATGTTAATAATTCGCATAAAGGTGGTATA
CAACCTTGCTCAACTAAATATCTAAAAAAACAAAATTATGTTAGCAAATA
TAAATTATAAAAAGAAAATGTCAATAAAAGACCTATATTAACGTTTGCAC
TTACCTAATTTGGTCATGGCTGCCTCCACTAGTGGCATTAGTAATAGCCC
AGGCTGCTTCTTTCCTTGTTTTAAATTCAGCTTGTCCCAAAATTTCAATC
AGCGCAGGGAAAATGTTGGCATCTATTACTTCCTGTAAATACAATATTGG
TAAATAAATATTTTTATAAAGTATGTATTTAGGCAAAAATATCTTGATTA
CTAGCAACCCGCCTCAGCTTCGCATGGGTGCAATGGTGATAAATTATGCC
TGTACTATATATACATTAAAATCTTCCCCTTGA back to topCoding sequence (CDS) from alignment at SFRU_RICE_021459:11320..17352- >SFRICE008490-RA ID=SFRICE008490-RA|Name=SFRICE008490-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1749bp|location=Sequence derived from alignment at SFRU_RICE_021459:11320..17352- (Spodoptera frugiperda rice) ATGTGTTCAGTACCAGAAGATGTAAAATGCATTGTTGAAACAAAAGATGG ACCTATATGTGGATATATTGATAAAAACGATGAGGGAACTTATTATAAAT TTAGTGGTATACCATATGCCAAACCACCCCTTGGTCGCTTGAGATTTATG CCTCCATCTCCTATCGAACCATGGGAAAAAGTTCGAGATTGTACTGAGAA ACAACCCCTACAGCTATGCTGTGTCTTAAATAAAAGTATAGAAGGTTCAG AGGATTGCCTCTATATTGAAATCTCAACCCCTAATATAAAGTCTGAAACA CCTATGCCAGTTATGTTTTGGATAGGAAGTTATGGATTCACAGGCATCAT GGATCAACTATTTGATGCTACTCTCATCAATAATGAAAATGTCGTATTTG TAAGGTGCGGCTTCCGATTAGGACCATTTGGCTTCCTTTCTATCAATGAC TTTACAGCACCGGGTAATTGTGGCCTAAAGGATTTAGTCATGGCTTTAAA ATGGGTACAAAGAAATATATCTGTATTTGGAGGTGATCCAGACAATGTCA CCATTTTTGGAAGTTCTTCAGGTGGAGCTATGGTCCATCTCATGATGTTA TCCCCAATGGCTACTGGTCTTTTCCACAAAGCAATTATACAAAGCGCAAG TGCATTGAACAATTGGTCTTTAACCAAAAACCCCTCTCTAGCTGTCATAG AACTAGCAAATGAATTGAACATCCAGAAAACGAATAAAGTAGAAATAATT GAAGAGCTGAGGACTTTACCTGCGTTAGATATAATGCAGGCATTTCATAA TATGGCATTAAGAACACAAAAGGCTGCCAATCATGATATCATTGATTCAA TCTTTAAACCATGTATCGAAGTTGACTTTGAAGGTCAACCTGCATTCCTT ACAAAAAGCCCTCTTCTAATTCTGAAATCTGGAAACTTCAACAAAGTGCC TTTAATCATTGGTAGTAATAATATTGAAGCTGCATTATTGGAATTCATTA AAGAAGATTTTTATTCTGACTATGAAAAGTTTAATGAGAACACCAGTCTT ATCGTACCTAGATCGATCGCTAGAGAAGACAAAGTAACAAAAAGTATAGG TCAACAATTACTAAAGTTCTATTTGGGTGGTGAAGAACACCTTACGGCCG AAACTAGAACACAGTACTTGCAATTAATAAGTGATTATTATTTCTTATAT TATGTCAATAGGACTGTAAGAATGCATAGTCAGTCTGCACCAGAATCCCC AGTGTACTATTATATTGTCAACTATGCTGGCGAGTGGTCAGTACCTACAG ACATCAATTTTTTGAACTCTCCCGGGCATTGCGCCGAGCTACCTTTCATA TTCCGTATTAAAATGCCAGAAATTTGCAAGGGTAGTCGAGATTCGGTGAT CACAAGAAGCAGAGTAATCAAACTGTGGACAAATTTTGCCAAAACCGGCA ATCCAACTCCTAATGAAGATGACCCTCTCTTACAAATAACTTGGGATCCC GTTGAAAATAAGGATAAATTAAACTATCTGAGCATAGGATCCGAACTTAC AAAAGGCAGGAATCCGTTTTATGAGAGAATGAAGTTTTGGGACTCTCTTC ATCAAGAACATGCATTTCTTAGAACAATTGTCTATTTTAATGATATAGGC AAAAATATCTTGATTACTAGCAACCCGCCTCAGCTTCGCATGGGTGCAAT GGTGATAAATTATGCCTGTACTATATATACATTAAAATCTTCCCCTTGA back to top
Synonyms
The feature 'SFRICE008490-RA' has the following synonyms
Synonym |
SFRICE008490-PA |
SFRICE008490 |
maker-SFRU_RICE_021459-snap-gene-0.31-mRNA-1 |
|