Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Full name | SFRICE015531 |
eAED | 0.17 |
QI | 0|0|0|1|1|1|10|0|449 |
AED | 0.17 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE015531-RA ID=SFRICE015531-RA|Name=SFRICE015531-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1350bp|location=Sequence derived from alignment at SFRU_RICE_000796:32032..38909- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
ATGTGCACAGGAGTGGACACCCGCTACCACTCCCGAGACGACTTCCCCAC CATCACCAGTAGCACCGATGTACTCACAAAGAAAGACAAACCAAAAGGCA GCAAGAAGTTAACGAAGTCGCGGTATAAAGCTGTCTTCATCAAGAGCATA CAGCAGTTCGCCAGGCATCCTGGTGGTCTAATATTCTCGATCCTGTTCCC CATCATCCAAGTGGTAGCATTCTTCGCGGCAGTAGGCCACGACCCGCGGG ATCTGCAGATTGGAGTGGTCAACGATGAAGCGGCTCTCTCACCATTTGGC TTAAAGATCTGCAGTAACACGAGTCTGGTGACGACGGTACTACAAGAGGA CGAGACGTGCGACCTGTACATGCTCAGCTGTTGGTTCTTAGAGGAAATGG AGAAAAAGATGTTGTTCCCTACTGTATTCAACTCCACGGAGGAAGCTCGC AATGCCGTAGCGACGGGCAAGTTGTACGGCGCTTTACACTTCTCCAGGAA CTTCAGCGCGGCGCTGGGCAAGCGCGTGGCCGACGGAGAGGTCGACGACG ACATCGTGGAGGACAGCAGCGTCAGCGTCTGGCTGGATATGACTAACCAT CAGATCTCCAACTTCATGAAGACCCAGCTCCATAAGGCGTACGAGAGCTT CACGCGGCGCGCCATGATAGCGTGCGGCAGGCCGGACAACTTAGTACAGA TACCAGTGCACTTCGAGAAACCAGTTTACGGTAAGAGTGAACCTCAAGTG GTCAGCTTCATGGCGCCAGGAATACTCATCACCATCATTTACTTCTTGTC TGCGATCGTGACATCGACGCTGATGATCACGGACCGCCTAGAGGGAGTGT GGGAGAGGAGTGCGGTGGCCGGAGTGAAACCGAAGGAGATGTTGAATGTG CACATCACGCTGCAGTCTGCTGTTATATTGTTACAGACAATAGAAATGAT GGCACTAGCCTTCATTGGGTACGGCATCCCCTCAGTGGGCTCCAAACTGG TGTGCGGCCTACTGCTGTTCTTACAGGGTATATGCGGCATGTGCTACGGG TTCCTACTGTCCGTCTACTGCAACAGCCATACCATGTCCTTCTTCGTGGC TACCGGCAGCTTCTATCCCATGATTCTGTTGTGTGGTATCCTATGGCCGC TAGAGGGAATGTCATACACGCTCCGAATGATTTCCCTCACCCTCCCGTTC ACGATCCCCTCAATATCTCTCCGAGATATTATGGAGAAAGGAGCCACCAT CATGGACAAATCAGTCATCTACGGTTTCCTAACCACCATCGCCTGGATAG TCATCACCCTAGCTTTAATTTACCTACGGTTACGCTTCAAGAAAACGTAG back to topprotein sequence of SFRICE015531-RA >SFRICE015531-PA ID=SFRICE015531-PA|Name=SFRICE015531-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=450bp
MCTGVDTRYHSRDDFPTITSSTDVLTKKDKPKGSKKLTKSRYKAVFIKSI QQFARHPGGLIFSILFPIIQVVAFFAAVGHDPRDLQIGVVNDEAALSPFG LKICSNTSLVTTVLQEDETCDLYMLSCWFLEEMEKKMLFPTVFNSTEEAR NAVATGKLYGALHFSRNFSAALGKRVADGEVDDDIVEDSSVSVWLDMTNH QISNFMKTQLHKAYESFTRRAMIACGRPDNLVQIPVHFEKPVYGKSEPQV VSFMAPGILITIIYFLSAIVTSTLMITDRLEGVWERSAVAGVKPKEMLNV HITLQSAVILLQTIEMMALAFIGYGIPSVGSKLVCGLLLFLQGICGMCYG FLLSVYCNSHTMSFFVATGSFYPMILLCGILWPLEGMSYTLRMISLTLPF TIPSISLRDIMEKGATIMDKSVIYGFLTTIAWIVITLALIYLRLRFKKT. back to topmRNA from alignment at SFRU_RICE_000796:32032..38909- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE015531-RA ID=SFRICE015531-RA|Name=SFRICE015531-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=6878bp|location=Sequence derived from alignment at SFRU_RICE_000796:32032..38909- (Spodoptera frugiperda rice) ATGTGCACAGGAGTGGACACCCGCTACCACTCCCGAGACGACTTCCCCAC
CATCACCAGTAGCACCGATGTAAGTTGTGTACCAACTTTTTAAATAGAGA
TCTTATGACTTTAAGGTGTTGTTTTAGGATATGGGGATAGAGAGGAGGAT
TAGGCTTCTAGTAACTTCACACACATGGCGAAATACCTACACGATACCAC
GGCCTAACAGGAAACCGACGTGAAATAACGTTCGCGTTGTGTTTCGTGTG
AATGAGGTTACCGGATGCCCTATTTACCCCACATCCAAATCTTCTCAATC
CCCGATTCCCCAACAACCCTTAAATTCCTAACCCATTGGGGGTGGGCAAC
GCACTCGTACCGTCTCTCTACACCAGAGGCGTTACAAGTTGGGTGTCCAT
GGGCGGCGGTTGCTTACCATCAGACCATCCGTCAGCTCGTTTACCGGCTT
ATACCATAAAAAATATCAATTTTATTATTTTACATTTCAGGTACTCACAA
AGAAAGACAAACCAAAAGGCAGCAAGAAGTTAACGAAGTCGCGGTATAAA
GCTGTCTTCATCAAGAGCATACAGCAGTTCGCCAGGCATCCTGGGTAAGG
AAACATCTTCCAACTTTCCAATGAGTCATTCATCTTCAAATACTTTAATA
TTAAATATCCCAAATTGTCATCATCATCATCATCGAAGTCAGTTCAGCCG
TTTTAGCGTAAAAATGGAACATACCTAGACATTTTTCGGACGGCGAGCAA
GGCTAGTTCGCTGCGTGGCCAAAAACAGACCCGTGCGTACTTCAAGAGCC
ATCAAACCACCACCAACCAACCACCAAGCAGTAGTAAGAACGGGGTGGTT
TTAGTCAGTACGAATCTAACACTCCCTCTTGCCCAAGGTGGGAGAAGACA
ATGGATGATTGTCCCACTTCAAAAAAATCTACACACTTTTAGAATCATTG
ATATTAGCAGATCTATCTATATTAAGCAGTTCATTTTTCAGTACAAGCTG
GTAAATTGGTAAATAATAATATCCTCTCTGTTCCAGTGGTCTAATATTCT
CGATCCTGTTCCCCATCATCCAAGTGGTAGCATTCTTCGCGGCAGTAGGC
CACGACCCGCGGGATCTGCAGATTGGAGTGGTCAACGATGAAGCGGCTCT
CTCACCATGTATGTAGAATCTCTGGATACTGCAATTTTCTTATTGACTCT
TATTTACAGGCGGTTTTAATTTAAAGATGAAATAGCAATTTGGTCCTTTC
AAAAGCTATACATAGGTACCTAAAGTAAAGCAAACCTTCTGAAAATCCAA
TCCAGGATTTGGCCCTCGTTATTTGCGCAATCTACCACTGCTGATCAGAA
CCTCTTCTCACAAGGAGAAGGTTTAAGCATTAATCACCACTTTACTCAAT
GCGGGTTGGAAGGTTTCGAACTCGCATCCACGTGCATCAGGAATGGGTGT
CTTAAACCTCCGGGGCACTAGGACGTACCTTTTTAAAAGACTAGAAATAC
ACTTGTAGCTCTTCTGGAGTTACGGATGGTACTGATTAATTACCATCAGG
TGATAAGCCTGCTCGTTTTCTCCATTCCTATTCTTATACAAAACTATGGA
AATATAACGCAAAACCAAACATGCAATTAATTTGCTTCATAAATTTCTTA
TTTCTACTTTCCAGTTGGCTTAAAGATCTGCAGTAACACGAGTCTGGTGA
CGACGGTACTACAAGAGGACGAGACGTGCGACCTGTACATGCTCAGCTGT
TGGTTCTTAGAGGAAATGGAGAAAAAGATGTTGTTCCCTGTACGTATACC
ATGTTTCTTTGACTCCATATTGTTTGTGCACTCTTTAAGTGGTTTCATTT
GTCATGTCAAGTAGATTGTTTAACTTTATTCAATTATCGCCGAATCACCA
ATTCTTCAAATGGCTAGTATCTCTATAAGTGTGGGAGAAACAAGCTTGAA
TGGGATACCACGGACTGACAGAAAATCGTCATGAAACAACGCTTGCGTGA
GTCAGGTTACCAGACGCCCAATTACCCCCCNNNNNNNNCCACCCAATCTT
CCCAATCCCCGTTTTCCCAACAATCCTTTAATTCCTAACCTACAAAAGGC
CGGCAACCCACGTCTAACGCTTTCGGCTGTCCATGGGCGGCGATTGCTTA
CCATCAGGAGATCGGTCTGCTCGTTTACCGGTTTATACCCAATAAAATTC
TGATCACTTTCCTAACTTTTCACTTTCTTTAAATCCCAGACTGTATTCAA
CTCCACGGAGGAAGCTCGCAATGCCGTAGCGACGGGCAAGTTGTACGGCG
CTTTACACTTCTCCAGGAACTTCAGCGCGGCGCTGGGCAAGCGCGTGGCC
GACGGAGAGGTCGACGACGACATCGTGGAGGACAGCAGCGTCAGCGTCTG
GCTGGATATGACTAGTGAGTATATTATCATCATTTTGATAATCGTCATCA
TCATCATCATTTTGATAATCATCATCATCATCATAATCTTGATAATCATC
ATCATCATCATGATCTTGATAAAATCAGCATAATTACCATCCTTTTCTGT
TTTTATCGTCACGCCTTTTATATCCCCCATTAAGGAACAGAGAGTAAAGT
TCCCTAAGAAAAGTAGGATCCTATGACCAGGTGATCCTGCCTGGCGGGCT
TTCTGCCAAACTGTTGTTCGATTGGAATTTGCTATCCGTGTTTATTCGTG
TAAACTTGACATTTGCGATGTGGGTTTTTATGACGTAAAAAACGTTTTCG
TTGTTTTGCTCGTCAATAGTCTATGTACGACTTCTATCATCTGTGACCAC
ACCCCTAAGGGATAGGCAGAAGTGCACGTTTCGGCACGTAATGCCACTAT
ACAATGTACACCCACTTTTCATCATGTAAAAGGGAGCCATATTGCCATAA
GCAGGTTGGGCATATTCCAGAACAAAGGCTACCCCTGACCAAATTTCATC
TCAATCCCTTTAGCAATTTTTGCGTGAAGGGGTAGATAACAAACAAACAT
GCTTACAAAACTTTAGCATTTATAATATTAGTAGAATTATTAGTTGCAAC
TAACACAATACAACACAGCATGTGCCCAATACATGACAATAAGCTCACCT
CCTATTACATGGGACTTATACCACAAATGGTGAAAAGTGGTTGTACATTG
TATAGCGGCATTAGCCTTAATGTGCACCTCTGCTTACCTCGGGGATAAAA
GGCGTGACGTTGCACTAAAACAATACAATAACTACGTGTTTCCCCCAGAC
CATCAGATCTCCAACTTCATGAAGACCCAGCTCCATAAGGCGTACGAGAG
CTTCACGCGGCGCGCCATGATAGCGTGCGGCAGGCCGGACAACTTAGTAC
AGGTATGTTTTTTTTTACATTTAATGGGTCGACGTTTGGCCGCTATCTCG
CCTGATGGTAAGTGATGATGCGGCCTACGACGGAGCACGTCTGCCCATAA
GCAACCTATTCACTCGTTATATTATATTATATCGTATGTTTCACAATACC
ATACAGAAATATGCTTGACACTTTAAACCCCACGGGAGTCACCGGTGACT
GACTTTAGCGGAGGATTTGCCTTCAACAGTTTTCTATTGGCAGACAAAGA
CTTAATTATTATGTTTTTTGGCTCACTCACGTAACTGTTTGACGAGGATC
TCGACTAGTTTCAAGCTATGCTAGGGGCTCATACATAAGACGCGGCGACT
GTCTCTAGGGTGACTTGAAACTATTCGAGTTCCTCGTCGAACAGTTACGT
GTGTAGGCTAAAAACATAATAATTGGTTTAGTATGTCTCACGTAATATTG
TTATGTATGTATTTTGCACTATAATATTATTTATTTATTTTTATTAAAAC
CACTTTTTATTATCGTATCGTATCTATTATACAGCTCATTTTAAAATCTT
AACTATTAAGCTACTAGTAACTAAGTTTTGTTTTAACTTTCACCAATCTA
CATTATATTAAGAAGAATTGATTATTTTTAACTAATACTTATATCAAATT
GTCTTTTTATCATTCATTTGTCATGTTTCTTATGCACTGCTTCGGACTTC
AGATAATTTTATAGCACATCATCACCATCGCCTTACATTGATATACGTTA
TGTACATCACCCATCAGTAAGTATTTATACATTCCAGTATTTATTGTTAT
GCCTACATCTTGCTACTCTGCACTTACAATAAAAAAAATCTATGCTAAGT
TGACTACGATATATATACCTTATTGGGATCGCTCGAGAAAAACAACGCTT
GTGTTGTTTCGTCGTCTGAGTGAAGTTAACAGAGACCAATTTATTAACTC
CAATCAGCCCAATTCCCGAATCCCCAACAATCCTCAAATTCTAAACCCCC
AAAAGGCCAGTAACGCTCTTGTAACGCCTCTGGTGTTACGGATGTCCATG
AGCGGCGGCGATTGCTTACCATCAGGTGATCAGTCGGCTCGTTTACCGGC
TTATCTCATAAAAAACTAAAAAGTTTGATATTCCCCATCTTAATAAAACC
CTAACAGATTGTCCACACCCATACCCGTAGTAGCCCCTGAAGCTGATGGT
GGGTTGACTGGATTGTCTGATTAGTATGAGTTATCGAAACGAGATCACGT
TTGGCACTCTGCTTGGTTAGTTTATATCGAACAAGCCAATTTAGACCACC
GAACGCGCTCTTGTTTCGATTACTTTAAACGTAAAGCAAACTCGTACTAA
AGCTACCGATCCGGAGCCTCCACTAATGCAATAACACCTGTTACGTTCCA
TTCCTAGGATCCAAATCCATCACCCATATATCCTACAAAAAATACATAGT
CCATTAAAAATGACCATCCATGCACACCAATTCACTGAGATCTAATATCG
TTATTTATGCGACAGATACCAGTGCACTTCGAGAAACCAGTTTACGGTAA
GAGTGAACCTCAAGTGGTCAGCTTCATGGCGCCAGGAATACTCATCACGT
AAGTAAATGGAGCAGGCGATGGAAATATGGATATGAAACTTTTTATTCTC
CTTATTTAAAGTTCTTAAAGAGTAACTGCCGCACTCAGAGACATTTAATA
ATTTTGTTCCGAATACAATTGCCAAGTAACCATTAAATGCCTCTAAGTAC
GGCGGTAAGAGTATGAGTTTTCACACCTCTAGAGGCGCTGAAGCAGGTAG
CTAGTATTAAGACCTATTGACCATCAGGCGCATTAATCAGCCCTCAGAAC
TCAACCCAAATGATTGAAAATGTCGACCTAATCTATGTAAATAAAAATCG
ATTGCTGTTCGTTAGTCTCGCTAAAACTCGTTAGTGGCTGATATAATGAT
GATGATGATTTGATGAAAACACCTTCTTATGCATTCCAGCATCATTTACT
TCTTGTCTGCGATCGTGACATCGACGCTGATGATCACGGACCGCCTAGAG
GGAGTGTGGGAGAGGAGTGCGGTGGCCGGAGTGAAACCGAAGGAGATGTT
GAATGTGCACATCACGCTGCAGTCTGCTGTTATATTGTTACAGGTTAGTT
ACTGGTTTTACAAAACGTGCGAAACCTACCAACGGCAAATACCTATGTGA
CGTTTTCCGAGTCATATGTACGTTCTAAAGATTATTTAGACACCACTGAC
ATACGGTGAAGGAAAACATCGTGAGGAAGTGTTGGCTTATAATTTTTAAT
TATAAGTTTCGAATCACCAATCTGCATTGAGCAAGCGTGGTGATTAGGCT
GTTGATGTTGATGTAATTACAAATGCACATTAAACTTTTTGCCTTAGTTC
CACATAAGGAGTGAATTGCCTTTTACTGGGCTTGTTTACAGTTTCGTAGG
ATAAATTACGCTAATCAGATACCCAGTTGCAATCATCTTCATCAATAATA
ATTGCACCAAGCTTCAATGACGGACAGACTGGTGGTATATTCTATTTTTT
TTTTTAACTTTTAAAAATACCTATTTACGGTTTAATTGAAATAAATGCTT
TTGGACAATTCAATAGGGCAAGAAGGGAGAGATAGCTAACGCCCCTTGGA
TAATATTATATCACACCTTAATCATATTCTTCTTTCTCCTTCCAGACAAT
AGAAATGATGGCACTAGCCTTCATTGGGTACGGCATCCCCTCAGTGGGCT
CCAAACTGGTGTGCGGCCTACTGCTGTTCTTACAGGGTATATGCGGCATG
TGCTACGGGTTCCTACTGTCCGTCTACTGCAACAGCCATACCATGTCCTT
CTTCGTGGCTACCGGCAGCTTCTATCCCATGATTCTGTTGTGTGGTAAGA
TTCTATTGGGATTTTTTTGCCAAAATCACTTTTCCTGAGAGAAATGTTGT
CCATTTTTGCTATTAGGATATTAAATCGGACTATAATTAATGCTACTCGG
TTACTTATTGAGAATTATTGAATTTAATAATGTGATGATACATCGTCACA
TTATTAAACTTCTATGATATCATCGTTCAAATGCCTTACAGGTCATTTGA
AATAAATAATTTTGACTTTTACTATCTTAATATATAATAGTTTTCTGCAG
TTCTTTGCAAAGACCTCTCTGAAGTCCAATAACCCTTAACAAAAGTAAAC
TACCTAATAAAAAAATAGCAAATATTAACATAAAAGACAATCGAAATTTC
AAAATAAAGCCAATCTAAGTATACTTTTATACAAGATCACTAACATAATT
TCTTTAATTCCAGGTATCCTATGGCCGCTAGAGGGAATGTCATACACGCT
CCGAATGATTTCCCTCACCCTCCCGTTCACGATCCCCTCAATATCTCTCC
GAGATATTATGGAGAAAGGAGCCACCATCATGGACAAATCAGTCATCTAC
GGTTTCCTAACCACCATCGCCTGGATAGTCATCACCCTAGCTTTAATTTA
CCTACGGTTACGCTTCAAGAAAACGTAG back to topCoding sequence (CDS) from alignment at SFRU_RICE_000796:32032..38909- >SFRICE015531-RA ID=SFRICE015531-RA|Name=SFRICE015531-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1350bp|location=Sequence derived from alignment at SFRU_RICE_000796:32032..38909- (Spodoptera frugiperda rice) ATGTGCACAGGAGTGGACACCCGCTACCACTCCCGAGACGACTTCCCCAC CATCACCAGTAGCACCGATGTACTCACAAAGAAAGACAAACCAAAAGGCA GCAAGAAGTTAACGAAGTCGCGGTATAAAGCTGTCTTCATCAAGAGCATA CAGCAGTTCGCCAGGCATCCTGGTGGTCTAATATTCTCGATCCTGTTCCC CATCATCCAAGTGGTAGCATTCTTCGCGGCAGTAGGCCACGACCCGCGGG ATCTGCAGATTGGAGTGGTCAACGATGAAGCGGCTCTCTCACCATTTGGC TTAAAGATCTGCAGTAACACGAGTCTGGTGACGACGGTACTACAAGAGGA CGAGACGTGCGACCTGTACATGCTCAGCTGTTGGTTCTTAGAGGAAATGG AGAAAAAGATGTTGTTCCCTACTGTATTCAACTCCACGGAGGAAGCTCGC AATGCCGTAGCGACGGGCAAGTTGTACGGCGCTTTACACTTCTCCAGGAA CTTCAGCGCGGCGCTGGGCAAGCGCGTGGCCGACGGAGAGGTCGACGACG ACATCGTGGAGGACAGCAGCGTCAGCGTCTGGCTGGATATGACTAACCAT CAGATCTCCAACTTCATGAAGACCCAGCTCCATAAGGCGTACGAGAGCTT CACGCGGCGCGCCATGATAGCGTGCGGCAGGCCGGACAACTTAGTACAGA TACCAGTGCACTTCGAGAAACCAGTTTACGGTAAGAGTGAACCTCAAGTG GTCAGCTTCATGGCGCCAGGAATACTCATCACCATCATTTACTTCTTGTC TGCGATCGTGACATCGACGCTGATGATCACGGACCGCCTAGAGGGAGTGT GGGAGAGGAGTGCGGTGGCCGGAGTGAAACCGAAGGAGATGTTGAATGTG CACATCACGCTGCAGTCTGCTGTTATATTGTTACAGACAATAGAAATGAT GGCACTAGCCTTCATTGGGTACGGCATCCCCTCAGTGGGCTCCAAACTGG TGTGCGGCCTACTGCTGTTCTTACAGGGTATATGCGGCATGTGCTACGGG TTCCTACTGTCCGTCTACTGCAACAGCCATACCATGTCCTTCTTCGTGGC TACCGGCAGCTTCTATCCCATGATTCTGTTGTGTGGTATCCTATGGCCGC TAGAGGGAATGTCATACACGCTCCGAATGATTTCCCTCACCCTCCCGTTC ACGATCCCCTCAATATCTCTCCGAGATATTATGGAGAAAGGAGCCACCAT CATGGACAAATCAGTCATCTACGGTTTCCTAACCACCATCGCCTGGATAG TCATCACCCTAGCTTTAATTTACCTACGGTTACGCTTCAAGAAAACGTAG back to top
Synonyms
The feature 'SFRICE015531-RA' has the following synonyms
Synonym |
SFRICE015531-PA |
SFRICE015531 |
maker-SFRU_RICE_000796-augustus-gene-0.10-mRNA-1 |
|