Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Full name | SFRICE022150 |
| eAED | 0.05 |
| QI | 0|1|0.5|1|1|1|2|44|508 |
| AED | 0.05 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| SFRICE022150-RA-three_prime_UTR | SFRICE022150-RA-three_prime_UTR-5 | Spodoptera frugiperda rice | three_prime_UTR | SFRU_RICE_012849 6888..6931 - |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1571bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGCAACCCTACTCCAGATGACTCCTTTGGCGTAGTATGGACCCC
ATACACCTTAGAGAATCAGGATTATTTGGACATCGGCAATGAATTGAAAA
CTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGGGAAAATATTTTA
ACAGAATTTGGACAAGAATTGTATTAAAGATTGATGTTTGAATTGGTAAT
AAATGGTAATAAAGTACTTAA back to topprotein sequence of SFRICE022150-RA >SFRICE022150-PA ID=SFRICE022150-PA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=509bp
MVLLSLSRLLQAPQPPEPWDGVRSAKEFGPGCFQYDLFVDKGHVSGSEDC
LYLNVYRPNVTHENPLPVMVWIHGGGLVSGAGDDYEYGPKFLVRQDVILV
TLNYRLEVLGFLCLDTEDVPGNAGMKDQVAALRWVKKNIASFGGDPDNIT
IFGESAGGVSVTYHLMSPMSKGLFRRAIAQSGVSVSYWAQSYKPRERGFA
LARKLGFYSDDVKEVYEFLKQQPLENLIKVKVPITYSEKVRTNNEVFFSV
VEEKQFGNNERFFYGDMIDAVSNGIHEGVDIMTGYTADEGIMSVAVFGDY
KESLEQAKHFPQFFVSYPMSLTLSTNDQLELGNRLKEYYFKEQIQIPDHW
ENLKDFYSMDVFVFPTMRWIKLSARSKKNKIYLYKFTCHTELNRASELMG
VGHLVGDKPMVAHSDDLTYLFSAREQPILDMNSEEFKQVEVVTKLWTNFA
KYGNPTPDDSFGVVWTPYTLENQDYLDIGNELKTGQAPDDEEIKFWENIL
TEFGQELY. back to topmRNA from alignment at SFRU_RICE_012849:6888..8620- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1733bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGGTGAGTAATATGTTGCTACTGTTATTAAGGTCTCTAGATAAC
GTACATTTTTATCATTACAGCAATGCTTTGCTTTGACAATGATTTCACAC
AAATTATATCACTTGACAGTTACTTTGCCTTTCGTGCCAAATAATAAATA
TTGCTTTACGTTTGTTTTAGCAACCCTACTCCAGATGACTCCTTTGGCGT
AGTATGGACCCCATACACCTTAGAGAATCAGGATTATTTGGACATCGGCA
ATGAATTGAAAACTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGG
GAAAATATTTTAACAGAATTTGGACAAGAATTGTATTAAAGATTGATGTT
TGAATTGGTAATAAATGGTAATAAAGTACTTAA back to topCoding sequence (CDS) from alignment at SFRU_RICE_012849:6888..8620- >SFRICE022150-RA ID=SFRICE022150-RA|Name=SFRICE022150-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1527bp|location=Sequence derived from alignment at SFRU_RICE_012849:6888..8620- (Spodoptera frugiperda rice)
ATGGTTTTATTGTCATTATCTCGATTGTTGCAGGCTCCCCAACCACCGGA
GCCATGGGATGGGGTCCGCAGCGCCAAAGAATTCGGACCGGGCTGCTTTC
AGTACGATTTGTTCGTGGACAAAGGACATGTATCAGGAAGTGAAGATTGC
TTGTATTTAAATGTGTACAGACCTAATGTTACACATGAAAATCCTCTTCC
AGTAATGGTGTGGATCCATGGAGGAGGTCTAGTGTCTGGTGCCGGCGACG
ACTACGAATACGGTCCCAAGTTCTTAGTAAGACAAGATGTAATCCTTGTT
ACTCTCAATTACCGACTTGAAGTACTCGGTTTCCTCTGTTTAGACACTGA
AGATGTGCCTGGAAATGCTGGCATGAAGGATCAGGTAGCAGCCCTCAGGT
GGGTGAAGAAAAATATCGCCAGCTTCGGTGGTGACCCAGACAACATAACT
ATATTCGGTGAAAGTGCTGGTGGTGTCAGCGTCACATACCACTTGATGTC
ACCAATGTCCAAGGGCCTATTCCGGAGGGCAATAGCTCAGAGTGGTGTCA
GTGTCTCGTACTGGGCTCAATCATACAAACCTCGTGAAAGAGGCTTTGCG
TTAGCAAGGAAATTAGGATTCTATTCTGATGATGTTAAAGAAGTTTACGA
ATTTCTAAAACAACAACCTTTGGAGAATTTAATAAAAGTCAAAGTTCCAA
TAACTTATTCCGAAAAAGTACGAACAAATAATGAGGTATTCTTTAGTGTG
GTTGAGGAAAAACAGTTTGGGAACAACGAGCGATTCTTCTACGGAGACAT
GATCGATGCAGTGTCGAACGGTATTCACGAAGGAGTTGACATTATGACAG
GATACACAGCGGATGAAGGGATAATGAGCGTAGCTGTCTTTGGTGACTAC
AAAGAAAGTTTAGAACAAGCCAAACACTTCCCGCAATTTTTCGTCTCATA
TCCAATGTCACTCACATTGTCCACTAATGACCAATTGGAGCTTGGCAACA
GATTAAAGGAGTATTATTTCAAAGAACAAATTCAGATACCAGACCACTGG
GAGAATTTAAAAGACTTTTATTCAATGGATGTATTCGTATTTCCTACCAT
GAGGTGGATTAAGCTGAGCGCCCGTTCCAAGAAGAACAAGATATATTTGT
ACAAGTTCACTTGTCACACAGAACTAAATAGGGCTTCTGAGCTGATGGGA
GTTGGCCATCTTGTTGGAGATAAACCAATGGTGGCTCATTCCGATGATTT
AACGTATTTGTTTAGTGCCAGAGAACAGCCTATACTGGACATGAATTCTG
AAGAATTCAAACAGGTCGAGGTAGTGACAAAACTTTGGACCAACTTTGCT
AAATATGGCAACCCTACTCCAGATGACTCCTTTGGCGTAGTATGGACCCC
ATACACCTTAGAGAATCAGGATTATTTGGACATCGGCAATGAATTGAAAA
CTGGACAGGCACCTGACGATGAAGAAATCAAATTTTGGGAAAATATTTTA
ACAGAATTTGGACAAGAATTGTATTAA back to top
Synonyms
The feature 'SFRICE022150-RA' has the following synonyms
| Synonym |
|---|
| SFRICE022150-PA |
| SFRICE022150 |
| maker-SFRU_RICE_012849-augustus-gene-0.9-mRNA-1 |
|