SFRICE023343-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	SFRICE023343-RA
Unique Name	SFRICE023343-RA
Type	mRNA
Organism	Spodoptera frugiperda rice (Fall armyworm - rice variant)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE023343	SFRICE023343	Spodoptera frugiperda rice	gene	SFRU_RICE_016335 3..3097 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023343-RA	SFRICE023343-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_016335 3..2976 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023343-RA-exon	SFRICE023343-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 3..53 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 243..382 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 636..778 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 866..1051 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 1164..1357 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-6	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 1440..1611 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-7	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 1717..1933 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-8	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 2048..2154 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-9	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 2302..2434 +
SFRICE023343-RA-exon	SFRICE023343-RA-exon-10	Spodoptera frugiperda rice	exon	SFRU_RICE_016335 2808..3097 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 3..53 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 243..382 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 636..778 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 866..1051 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 1164..1357 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-6	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 1440..1611 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-7	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 1717..1933 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-8	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 2048..2154 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-9	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 2302..2434 +
SFRICE023343-RA-CDS	SFRICE023343-RA-CDS-10	Spodoptera frugiperda rice	CDS	SFRU_RICE_016335 2808..2976 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023343-RA-three_prime_UTR	SFRICE023343-RA-three_prime_UTR-21	Spodoptera frugiperda rice	three_prime_UTR	SFRU_RICE_016335 2977..3097 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_016335:3..3097+
coding sequence from alignment at SFRU_RICE_016335:3..3097+

spliced messenger RNA

>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1633bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAG
GCCGCAGCGACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTT
CTCGTCACCATCAACTACAGACTTGGATCCTTAGGCTTCATGAGTACGGG
CGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTGGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCGGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACAGGCTGCAGCGCCGGCTCTATCAACGTCATCCTGCATAT
GATCTCGCCCATGGCCAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCTAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTTTGGGGG
CCGGTGGTAGAGCCAGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCCATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACTACTGACGAATTTTTCTGGAAGGCATTCCCGGTCTTACAAAAC
GAAACGCTTCTGAAGGCAATGAATGAGGAGTGGGACAGAGTCGCCCCCAT
CTCGTTCATGCTACCGATGGAGAACCGTGCCGCGGCGGTAAAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATTGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCGCAAGGTGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCG
TCGACGAGATGACGGCGCTCTGGTACAACTTCGCCAGATATGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGCAGCTCCAGGTGC
GGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTACTGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGTTTTTA
CACAGAATATAAAAATGTTAATAAACTAATTCAGAATGTTATAATTTTAT
ATTGTAAAGTTTTGTACCCGATTTTAAATAAAT

protein sequence of SFRICE023343-RA

>SFRICE023343-PA ID=SFRICE023343-PA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=504bp
YRGIRYADPPVGALRFQPPKLKLQYEGVVDASEEGPACPLPAPPTYYVDE
DCLTVNVYTPTHNSTKKLPVIFFIHPGGFYAMTGRSDLAGPHYLLDRDVV
LVTINYRLGSLGFMSTGDALAPGNNGMKDQVAALKWVQRNIAAFGGDPNL
VTITGCSAGSINVILHMISPMAKGLFHRGIAMSASPVGKGVEAITHQRHL
AVRQAQILNCPTDNSSAIVDCLMTKPWRELGDSLPKFWEFGEGDPVGLWG
PVVEPDFGQERYLPINPLDAIKEGKMHTVPLIVSQTTDEFFWKAFPVLQN
ETLLKAMNEEWDRVAPISFMLPMENRAAAVKKLREVYLKGNKLANDKPSE
KALGQLYGDSVIGFGVHRLANLMCRHSKHPVWYSEFAYIGNNSHYEDSHG
KPQGAAHHDDLLYLFTLSYRFPVISPDSQHSHVVDEMTALWYNFARYGDP
NPRGDTPELGRLRWPAMTAADRRYLHRGPQLQVRQNLFEERFKVWDDLYP
IQY.

mRNA from alignment at SFRU_RICE_016335:3..3097+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3095bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GGTAACATCCACATATACATAGCGTGCAATCTAGTCCATGACAAAAAACA
TCATCACAAATCTACAACCCATAAATGTCCACTACTGGACTATAGGCCCC
TCTACCGGTCTCTAGAGTTTAATATTCCTTTTGCCTCTCTCTTCTACATG
CAACCATGCAGTTTAAGTAATTCGTTCCTTGTGTCTGCAGCCGCCGAAGT
TGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGGAGGGCCCCGCC
TGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAGGACTGCCTCAC
TGTCAACGTCTACACGCCGACACACAACAGGTTCGTTACCATTTCTTTCA
GCTGATCTTAACATATACACAATATAGGACACTGAGCTCAATCTTGACTA
TTTGCATTCAACTACTGCAAGTCACTTTTAGATCGTAACTACACCTGGCA
GTCTACGCCTACAGGGACGTGCGCTTTATTCCAGTCGATACCGTTATCGA
TTCTACAGCAAGTGACCGACTTACTACTTCAACATATCTATTTACTGCTA
TTATTTGTATAATAACTTTCTATTTTGTCGCAGCACCAAAAAGCTCCCCG
TGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAGGCCGCAGC
GACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTTCTCGTCAC
CATCAACTACAGACTTGGATCCTTAGGTAGTCACCGAACTCCTGAATACT
CCTAAATAAATTGACTTTGTTTTGTCCCTCCTTAGTTGATTTTACTAAGC
TTACTTTATCTAGGCTTCATGAGTACGGGCGATGCACTCGCCCCCGGTAA
CAACGGCATGAAGGACCAGGTGGCCGCCCTCAAGTGGGTGCAGAGGAACA
TCGCGGCGTTCGGCGGCGACCCGAACCTCGTCACGATCACAGGCTGCAGC
GCCGGCTCTATCAACGTCATCCTGCATATGATCTCGCCCATGGCCAAAGG
TAATCAGTACTGTCTTGCGATGACAGTACTTGAAGACATCTGGCACCAGA
ACTAAATGTAGAGTGAATTATCCAGGTAGTGGTCCTTTGTACATTAAAAC
AATGCTTCTAGGTCTCTTCCACCGCGGCATAGCAATGAGCGCGTCTCCTG
TAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTCGCAGTACGC
CAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGCCATCGTCGA
CTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCACTGCCTAAAT
TCTGGGTACGTTTGATATTAAAAGAACTTTTGAAAAATGTGACAAAATAT
TGAAAATGCCCAGAAATAAAGTATTGCGTTGTTGCAGGAGTTTGGTGAAG
GTGACCCAGTGGGTCTTTGGGGGCCGGTGGTAGAGCCAGATTTCGGGCAG
GAGCGGTACCTGCCTATCAATCCATTAGATGCCATTAAAGAAGGCAAAAT
GCACACCGTGCCACTCATCGTGAGTCAGACTACTGACGAATTTTTCTGGA
AGGCATTCCGTAAGTTACCATTGTTTTAGCAAATATTTATTATTATGAAC
ACAAGAACTTTATATTAGTAGATTGAAATAATTTATACGATTGCCCTAAC
TTGCTTGCTTCTAGCGGTCTTACAAAACGAAACGCTTCTGAAGGCAATGA
ATGAGGAGTGGGACAGAGTCGCCCCCATCTCGTTCATGCTACCGATGGAG
AACCGTGCCGCGGCGGTAAAGAAACTTAGAGAGGTGTACCTCAAGGGGAA
CAAGTTGGCCAATGATAAACCAAGTGAGAAAGCACTCGGACAACTTTATG
GAGACTCCGTTATTGGGTTTGGAGTACACAGGTAAGGCGATTATTTACCT
TTTGGTACTACTTGAATTTTTACATGGGAAATCCACTTGATCATAATAGA
CTTTATCATTATTCCCTACTTAACACAATGTTGATGTATCCCCAGGCTGG
CCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACTCGGAATTC
GCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGAAAACCGCA
AGGTAAATTCTCTTCTGACACTATATAATAGAGGATCAGCCGTTAGTCTT
AAAAAATCGTAGAACAGAAAAAGCATTTTGTGGTCAGTGGATAGCTTTAG
GGGTTGTTTATCAAACATACATGTGTTAATAAATTATTTCACTGTGCAGG
TGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCTGAGCTACCGGT
TCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCGTCGACGAGATG
ACGGCGCTCTGGTACAACTTCGCCAGATATGGGTAAGACACCAGGCACCA
CATCAACAATCATCATAGGTATTACTTTTGTAAAGATGGAAAACTACCAA
CGTTTCCTCCCGCTCTAGATGACGGTGGCATTTTGGTAGGCCTTTGTAGA
TCTTGATTTATCGGAGATTCGGAGTTGCAGTGTTTGAGATAAGGTGGTGG
GCCATTGTTATACCCTGGCTGACGAGCAGTCGTCACCTAATGGTAACCGC
ACATAAACACCTTTAACGCCACAGGTATTACAAGTACATTGCCGGCCTTT
TGAGGAGTTTGAGATTGGAGGATTTGACTTCCTCGAAAAACAAATATCTA
CCTATGCTTAAATATGTTTGATTAAAGTTGTAAAGGAATTGTTTGATTCC
CACAGAGACCCGAACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCG
CTGGCCCGCCATGACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGC
AGCTCCAGGTGCGGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGAC
GACTTGTACCCCATACAGTACTGAGGACTGTAGCTGAACTAGCTGAGACT
AGCGTGTTTTTACACAGAATATAAAAATGTTAATAAACTAATTCAGAATG
TTATAATTTTATATTGTAAAGTTTTGTACCCGATTTTAAATAAAT

Coding sequence (CDS) from alignment at SFRU_RICE_016335:3..3097+

>SFRICE023343-RA ID=SFRICE023343-RA|Name=SFRICE023343-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1512bp|location=Sequence derived from alignment at SFRU_RICE_016335:3..3097+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGCTGCAGTACGAAGGCGTAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCCCCTCCCACCTACTACGTGGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATCTTCTTCATCCACCCCGGCGGGTTCTACGCGATGACAG
GCCGCAGCGACCTGGCCGGCCCCCACTACCTGCTGGACAGAGACGTAGTT
CTCGTCACCATCAACTACAGACTTGGATCCTTAGGCTTCATGAGTACGGG
CGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTGGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCGGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACAGGCTGCAGCGCCGGCTCTATCAACGTCATCCTGCATAT
GATCTCGCCCATGGCCAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAAGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGCCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCTAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTTTGGGGG
CCGGTGGTAGAGCCAGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCCATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACTACTGACGAATTTTTCTGGAAGGCATTCCCGGTCTTACAAAAC
GAAACGCTTCTGAAGGCAATGAATGAGGAGTGGGACAGAGTCGCCCCCAT
CTCGTTCATGCTACCGATGGAGAACCGTGCCGCGGCGGTAAAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATTGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACATTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCGCAAGGTGCGGCCCACCACGACGACCTGCTGTACCTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCGGACAGCCAGCACTCGCACGTCG
TCGACGAGATGACGGCGCTCTGGTACAACTTCGCCAGATATGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCAGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCACCGCGGGCCGCAGCTCCAGGTGC
GGCAGAACTTGTTCGAGGAGCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTACTGA