SFRICE023373-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	SFRICE023373-RA
Unique Name	SFRICE023373-RA
Type	mRNA
Organism	Spodoptera frugiperda rice (Fall armyworm - rice variant)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE023373	SFRICE023373	Spodoptera frugiperda rice	gene	SFRU_RICE_003199 3..3343 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023373-RA	SFRICE023373-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_003199 3..3212 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023373-RA-exon	SFRICE023373-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 3..53 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 249..388 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 610..752 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 844..1029 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 1142..1335 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-6	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 1417..1588 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-7	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 1694..1910 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-8	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 2029..2135 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-9	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 2462..2594 +
SFRICE023373-RA-exon	SFRICE023373-RA-exon-10	Spodoptera frugiperda rice	exon	SFRU_RICE_003199 3047..3343 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 3..53 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 249..388 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 610..752 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 844..1029 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 1142..1335 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-6	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 1417..1588 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-7	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 1694..1910 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-8	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 2029..2135 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-9	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 2462..2594 +
SFRICE023373-RA-CDS	SFRICE023373-RA-CDS-10	Spodoptera frugiperda rice	CDS	SFRU_RICE_003199 3047..3212 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE023373-RA-three_prime_UTR	SFRICE023373-RA-three_prime_UTR-21	Spodoptera frugiperda rice	three_prime_UTR	SFRU_RICE_003199 3213..3343 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_003199:3..3343+
coding sequence from alignment at SFRU_RICE_003199:3..3343+

spliced messenger RNA

>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1640bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATTTTCTTCATCCACCCCGGCGGGTTCTACTCGATGTCCG
GCCGCAGCGACCTGGCCGGCCCTCACTACCTACTGGACAGAGATGTCGTC
CTTGTCACCATCAACTACAGGCTTGGATCCTTAGGCTTCATGAGTACGGG
AGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTCGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCCTGCATAT
GATCTCGCCCATGGCTAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAGGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGTCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCGAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCCCGTCTTACAAAAC
GAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCCCCGAT
ATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACGTTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCACAAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCG
TCGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTGC
GGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTAGGACTGGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGTT
ACATTTACACGGAATATTAAAATGTTAATAAACTGATTCAGAATGTTGTA
ATTTAATATTGTAAAATTTTGTACCCGATATTAAATAAAT

protein sequence of SFRICE023373-RA

>SFRICE023373-PA ID=SFRICE023373-PA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=503bp
YRGIRYADPPVGALRFQPPKLKLQYEGIVDASEEGPACPLPAPPTYYVDE
DCLTVNVYTPTHNSTKKLPVIFFIHPGGFYSMSGRSDLAGPHYLLDRDVV
LVTINYRLGSLGFMSTGDALAPGNNGMKDQVAALKWVQRNIAAFGGDPNL
VTITGCSAGSISVILHMISPMAKGLFHRGIAMSASPVGKGVEAITHQRHL
AVRQAQILNCPTDNSSAIVDCLMTKPWRELGDSLPKFWEFGEGDPVGLWG
PVVEPDFGQERYLPINPLDAIKEGKMHTVPLIVSQTTDEFFWKAFPVLQN
ETLLKAMNEEWERVAPISFMLPKENRAAAVQKLREVYLKGNKLANDKPSE
KALGQLYGDSVIGFGVHRLANLMCRHSKHPVWYSEFAYVGNNSHYEDSHG
KPQGAAHHDDLLYVFTLSYRFPVISPDSKHSHVVDEMTALWYNFARYGDP
NPRGDTPELGGLRWPAMTAADRRYLHRGPQLHVRQNLFEDRFKVWDDLYP
IQ.

mRNA from alignment at SFRU_RICE_003199:3..3343+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3341bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GGTAACATCCGCATATACCGTGTAATCTAATCCACGACAAAACACACCAC
AAATCTGCAGCCTATAAGAGACCAGTGCTGGACTATAGACCCCTCTACCG
GTCCCTAGAGGTACATATTTCTTTTGAGGAAGAAAGAGGCTTCTCATTTT
CGTTTTCAACCATGCAGTATAAGTAATTCGTTCCTTGTGTCTGCAGCCGC
CGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGGAGGGC
CCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAGGACTG
CCTCACTGTCAACGTCTACACGCCGACACACAACAGGTAATCACCATTTC
TTTCTGCTGATCTAATCACACATACACTAGCACGCCACAGAGCTCAATCT
TGTCTTTTTGCATTCAACTTCTGCAAGTCTTTTAGATCGTAACTACACCT
TGCTGGGGAGCGCTATTCCAGTTGAAACTGCAACAAACGTGACCGAACCA
CTTCAGCTTATCTATGAACTATTTCTATAATAATAATTACTTTCTATTTT
GTCGCAGCACCAAAAAGCTCCCCGTGATTTTCTTCATCCACCCCGGCGGG
TTCTACTCGATGTCCGGCCGCAGCGACCTGGCCGGCCCTCACTACCTACT
GGACAGAGATGTCGTCCTTGTCACCATCAACTACAGGCTTGGATCCTTAG
GTAGTCACCGAACTCCTGAATTAATTGCCTTTCTTTTGTTCCTCCAATTC
CACCTTCCAAAGAAGAATTTGACTAAGCTTGTTTTGTCTAGGCTTCATGA
GTACGGGAGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTC
GCCGCCCTCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCC
GAACCTCGTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCC
TGCATATGATCTCGCCCATGGCTAAAGGTAATCAGTACTGTCTTACTATG
GAAGTACTTGAAGATATCTGCTACCAGAACTAGCTGTAGAGTGAATTATC
CGGGTAGTGGGCCTTTGTACATTAAAGCAATGTTTCTAGGTCTCTTCCAC
CGCGGCATAGCAATGAGCGCGTCTCCTGTAGGCAAGGGAGTGGAAGCTAT
AACTCATCAGCGCCACCTCGCAGTACGCCAGGCACAGATCCTCAACTGTC
CGACTGACAACTCGTCCGCCATCGTCGACTGTCTTATGACCAAGCCTTGG
AGGGAGCTCGGAGACTCACTGCCGAAATTCTGGGTACGTTTTTATTAAAA
GAACTTTTGAAAAATGAGACAGGATACTGAGAATGGCCAGAAATAAAGTA
CTGTGTTGTTGCAGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCGTAAGTAACCATAG
TTTTAGCAAATATTTATAAGTATATCAACACAACAACTTTGTTAATAAAT
TTAAATAATGTATACTATTGCCCTAACTTGCTTACTTCTAGCCGTCTTAC
AAAACGAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCC
CCGATATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAA
ACTTAGAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAA
GTGAGAAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGA
GTACACAGGTAAGGCGATAATTTAGTTTTTGGAACTATGTAAATTAATTT
TGATATGGGAACGCTACTTAATCATAACAGAGTTTATCATTATTCTCCAC
TTAACACAGCGTTGATGTATGCGCAGGCTGGCCAACCTAATGTGTCGTCA
CTCCAAGCATCCAGTGTGGTACTCGGAATTCGCGTACGTTGGGAACAACT
CCCATTATGAGGACTCTCACGGAAAACCACAAGGTAAATTCTTTTCTGAC
TGACACTAAATTCTGGTGGATTTGTTTTGTGCTAATAAACAGATGATTTG
CCGTTAGTCTTGAAAGTCTTAGGATAGAAAATGGGTAGAAAAAGCAATTT
GTTTATCTAACATAGGTTTTTTTTTGAGGGGGTAAATCATCCAATGACTT
CTCTCGCCCTGGGCGAGGCGAGAGGGAGTGTCTGACTCTTACTGACTAAA
AACCACCCTGTTCCTACTCCTGCCTTTCGAACATCTAACATAGGTACAAG
TGTGTTAGTTAAATAAGTTGTTCAAGTACAGTACAGGTAATAAGTTGTAC
ACTGTGCAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCTG
AGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCGT
CGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGGTAAGACA
CCACCACTTAAACAATCATCGTAGGTATTACTTTTGTAAAGATGGAAAAC
CACCAAATGTTTCCTCACGCTCTAGGTGACGTGCGACGCTAGAGAGGGCC
ATACTTTGACCACTACCCCGTTCCTATTTTCACCCTAGTCTTTTCTTTTT
TGAAGACAGGGAAGAAACCTTCAGAAGGCTCCTAGCCGAAAAACTAGGGA
GACTTAAGTAACTTACTAAAACCCCATCGGTGGCCACCGTCAACACCTGT
AAGGGCTATCTGACATTCTAATAGATCTGCTCCGGAGACCCCACTGTGCA
ACGCCTGCTAAAACATACTTATGGAAGTGTGCCTCTCCCTTGACTTCTGC
ACTGACTCAAAGAAATAAAGAGATGACAAGGAGGATTGTGACATCATCAA
ATAAAAGTAAAGTAGAGTAATAGCTAATTGTTTGGTCCCCCCAGAGACCC
GAACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCA
TGACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTG
CGGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCC
CATACAGTAGGACTGGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGT
TACATTTACACGGAATATTAAAATGTTAATAAACTGATTCAGAATGTTGT
AATTTAATATTGTAAAATTTTGTACCCGATATTAAATAAAT

Coding sequence (CDS) from alignment at SFRU_RICE_003199:3..3343+

>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1509bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATTTTCTTCATCCACCCCGGCGGGTTCTACTCGATGTCCG
GCCGCAGCGACCTGGCCGGCCCTCACTACCTACTGGACAGAGATGTCGTC
CTTGTCACCATCAACTACAGGCTTGGATCCTTAGGCTTCATGAGTACGGG
AGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTCGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCCTGCATAT
GATCTCGCCCATGGCTAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAGGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGTCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCGAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCCCGTCTTACAAAAC
GAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCCCCGAT
ATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACGTTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCACAAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCG
TCGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTGC
GGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTAG