SFRICE033104-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	SFRICE033104-RA
Unique Name	SFRICE033104-RA
Type	mRNA
Organism	Spodoptera frugiperda rice (Fall armyworm - rice variant)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE033104	SFRICE033104	Spodoptera frugiperda rice	gene	SFRU_RICE_015775 598..2989 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE033104-RA	SFRICE033104-PA	Spodoptera frugiperda rice	polypeptide	SFRU_RICE_015775 761..2944 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE033104-RA-exon	SFRICE033104-RA-exon-5	Spodoptera frugiperda rice	exon	SFRU_RICE_015775 598..878 -
SFRICE033104-RA-exon	SFRICE033104-RA-exon-4	Spodoptera frugiperda rice	exon	SFRU_RICE_015775 1460..1653 -
SFRICE033104-RA-exon	SFRICE033104-RA-exon-3	Spodoptera frugiperda rice	exon	SFRU_RICE_015775 2103..2244 -
SFRICE033104-RA-exon	SFRICE033104-RA-exon-2	Spodoptera frugiperda rice	exon	SFRU_RICE_015775 2497..2555 -
SFRICE033104-RA-exon	SFRICE033104-RA-exon-1	Spodoptera frugiperda rice	exon	SFRU_RICE_015775 2804..2989 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE033104-RA-three_prime_UTR	SFRICE033104-RA-three_prime_UTR-12	Spodoptera frugiperda rice	three_prime_UTR	SFRU_RICE_015775 598..760 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE033104-RA-CDS	SFRICE033104-RA-CDS-5	Spodoptera frugiperda rice	CDS	SFRU_RICE_015775 761..878 -
SFRICE033104-RA-CDS	SFRICE033104-RA-CDS-4	Spodoptera frugiperda rice	CDS	SFRU_RICE_015775 1460..1653 -
SFRICE033104-RA-CDS	SFRICE033104-RA-CDS-3	Spodoptera frugiperda rice	CDS	SFRU_RICE_015775 2103..2244 -
SFRICE033104-RA-CDS	SFRICE033104-RA-CDS-2	Spodoptera frugiperda rice	CDS	SFRU_RICE_015775 2497..2555 -
SFRICE033104-RA-CDS	SFRICE033104-RA-CDS-1	Spodoptera frugiperda rice	CDS	SFRU_RICE_015775 2804..2944 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
SFRICE033104-RA-five_prime_UTR	SFRICE033104-RA-five_prime_UTR-6	Spodoptera frugiperda rice	five_prime_UTR	SFRU_RICE_015775 2945..2989 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at SFRU_RICE_015775:598..2989-
coding sequence from alignment at SFRU_RICE_015775:598..2989-

spliced messenger RNA

>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=862bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TGTATATCTTAAAATGTGTTTCCATTATAAGATTGTGATTTCCAGATGGT
TGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTGCATGA
TGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAAACCTC
ATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGAAAAATCCTCTCCA
CACAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAGCCACG
CAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTTGGTAC
CCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTCTTCGA
CACAGCTATAATTTTCCCTAGATTACGAAATATCACATATAACATTGTGA
TGAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTGCAGAA
GCCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATAGCTGC
AGATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGACGTCTC
TCGAACACATTCTTCCTGTGGAACCTAAAAAATACCCAAAAACATCTGCG
TGGTTAGCAAACTTGAAAGCGACGCCATATTGCAAGAAATGGAACGAAGA
AGGTGCTAATGCTTTGGGCGCGTATGTTAAGAGTAAAGTTGCTTTGTAAG
GTCTAAGCGAATAAATGTATTTAACCAGAATTACTTTTTATTATACAATT
TCTCATGTATGAATAAAGATATATTTTCCATTTATTATCGTTTTGTTTTA
TCTTTGAACCCTAGGAAGACTACGTCGAAGTTATCATTTAAACAGGATCA
TTCTGAGAAAAG

protein sequence of SFRICE033104-RA

>SFRICE033104-PA ID=SFRICE033104-PA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=218bp
MVVKLYTLDMSPPVRACMMACEIFNVPFEKIPVNLIAGEHLTPEYLKKNP
LHTVPVMEDGDVTLHDSHAIMAYLADTYGKDESWYPKDTKKRALVNQKLF
FDTAIIFPRLRNITYNIVMKGKTTIEPELMEAIAEAYGFMEAFLSRTKYI
AADHVTIADIGILAVMTSLEHILPVEPKKYPKTSAWLANLKATPYCKKWN
EEGANALGAYVKSKVAL.

mRNA from alignment at SFRU_RICE_015775:598..2989-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2392bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)
TGTATATCTTAAAATGTGTTTCCATTATAAGATTGTGATTTCCAGATGGT
TGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTGCATGA
TGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAAACCTC
ATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGGTAAGATAATATAT
CTGCTATATGTTTTTACTCTAATGCTGCACTGTAGTTGATCCAACAGAAA
TTATGACTTAGCAGTTGTGCATAAGTACTAGTAATCCTATGTGTAAATTA
TACGTCATAAGAACATACACAGTTTTATGCTATGTCCATCTACATTCCTA
TGGGTTATAAACGGATAGAAATATCTTAAGAGTATAGATGTACATAAATG
CAACTTAAATAAAAAAGATTTTTGTTTTTTACAGAAAAATCCTCTCCACA
CAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAGGTTGGTG
TGATTTCTTCTCGAACATTATAGACTGTTAACTGTATCAAATCATCATCA
AACACACTCAAAACACTTCAAATACAGATCATTTAGCACACACACCGTGA
TGTCGATCACGGTTGTATAGTCTGAGTTAGAAGTGGCATTACTATGACCA
TGGTCTTAACTTAAGATCAATTCTATGCCAAAAAAATCTGAGACCCTCAT
AAAAAAGTAAACACATAACTTATGCACACTTTTTTTCATTTCCAGCCACG
CAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTTGGTAC
CCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTCTTCGA
CACAGCTATAATTTTCCCTAGATTACGAAATATCACAGTAAGTAGCATTC
TTGAAACTACAAGGCAGATTTGAATGGGACCGTTGGTAGAAGGCGCCTTA
GACGGACATAGAGCGACCAGATTAGCGATATATTATAGAAGGGCCAAATT
AAAAGTAACTTTAACTGACGAGCATACATGAAAAGACTGATGAATGTTGA
TGATGAAGTGAAAGAGATGTGTAAGAATCGTAGTAAATGGCGTTCCATTG
TCTCCGCCTCCCCCATGGGCATTCTCGCTTAATAACATGACACGTACACA
ACGTATGTCTAAATATAAATATTTTGTTTTCAAATGGAAAAGATTTTAAA
AAAACATTCAAACCAAAAACAAATATTTTTCATTACAAATAACATATAAA
TATATAGAGCATTAACAATATGGATATCGTCTGAAATATGGTATTAACAG
ATTTTTTGTATTAAAATATTATATTTTTTCTTACAGTATAACATTGTGAT
GAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTGCAGAAG
CCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATAGCTGCA
GATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGACGTCTCT
CGAACACATTCTTCCTGTGGAACCTAAAAAGTGAGTAAAATTATTCCTCT
TTAACCTCTTGTCTGCCGGTACAGGAGCCACAATAGAAAACACACTGTGT
TTCGAGTAGATCTGCGTTTATACCACGGGTTAAAAGGCCGGCAACGCACC
TATGACTGCTCTAGTGTTACGCCCCGTCTATGGGCAGCATGATCGCTTAC
CATTACGTGATCCGTCAGCTTGTTTACCTCCTATCCCATAAAAAAATACA
TTTAGAGTTTTTGCCCACAATTCTCTGGTTAACTTCGTTAGTCAAATTAA
CGTTTTAATAAGTCAATATGAACCTAATTGGATTTGATAAATGGATTAAA
AAAAGCAATATTATTTTTCGAATTTCGACATAAGCTTGCTTATTATGTTA
GTTTGCAATGCAAAAGGGCTTACACTCGTTCACTACATTCTTTCTGAAGG
AACTGAAGGGGGTCGACAGAAAACCAAAGGCGTCGACATAACTGATAAGC
TTAAATGTCAAACAGTGTACAGAAATGTCGGAGGAAAAAATAAAGTTTTA
ATAGTTTAAATTATGATGAATCAATTATGAATATTAAACCAATTTGTTGT
TTCTCTTTCAGATACCCAAAAACATCTGCGTGGTTAGCAAACTTGAAAGC
GACGCCATATTGCAAGAAATGGAACGAAGAAGGTGCTAATGCTTTGGGCG
CGTATGTTAAGAGTAAAGTTGCTTTGTAAGGTCTAAGCGAATAAATGTAT
TTAACCAGAATTACTTTTTATTATACAATTTCTCATGTATGAATAAAGAT
ATATTTTCCATTTATTATCGTTTTGTTTTATCTTTGAACCCTAGGAAGAC
TACGTCGAAGTTATCATTTAAACAGGATCATTCTGAGAAAAG

Coding sequence (CDS) from alignment at SFRU_RICE_015775:598..2989-

>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=CDS|length=654bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)
ATGGTTGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTG
CATGATGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAA
ACCTCATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGAAAAATCCT
CTCCACACAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAG
CCACGCAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTT
GGTACCCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTC
TTCGACACAGCTATAATTTTCCCTAGATTACGAAATATCACATATAACAT
TGTGATGAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTG
CAGAAGCCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATA
GCTGCAGATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGAC
GTCTCTCGAACACATTCTTCCTGTGGAACCTAAAAAATACCCAAAAACAT
CTGCGTGGTTAGCAAACTTGAAAGCGACGCCATATTGCAAGAAATGGAAC
GAAGAAGGTGCTAATGCTTTGGGCGCGTATGTTAAGAGTAAAGTTGCTTT
GTAA