GSSPFG00022735001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00022735001-RA
Unique NameGSSPFG00022735001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23105contigscaffold_23105:62..3373 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00022735001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00022735001GSSPFG00022735001Spodoptera frugiperda corngenescaffold_23105 62..3373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00022735001-RAGSSPFG00022735001-PASpodoptera frugiperda cornpolypeptidescaffold_23105 62..3373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00022735001-RA-CDSGSSPFG00022735001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_23105 62..230 -
GSSPFG00022735001-RA-CDSGSSPFG00022735001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_23105 2424..2662 -
GSSPFG00022735001-RA-CDSGSSPFG00022735001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_23105 3170..3373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00022735001-RA-exonGSSPFG00022735001-RA-exon-3Spodoptera frugiperda cornexonscaffold_23105 62..230 -
GSSPFG00022735001-RA-exonGSSPFG00022735001-RA-exon-2Spodoptera frugiperda cornexonscaffold_23105 2424..2662 -
GSSPFG00022735001-RA-exonGSSPFG00022735001-RA-exon-1Spodoptera frugiperda cornexonscaffold_23105 3170..3373 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00022735001-RA ID=GSSPFG00022735001-RA|Name=GSSPFG00022735001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=612bp|location=Sequence derived from alignment at scaffold_23105:62..3373- (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCCTATTGGCAAAGGTCCTACAAAGAAAACGTCCATTAATTTT
TCAGACAGAAATGAAACTAGGCAGCTGCAAGGATCGAAGAATTAAAGCTA
CGCTGGACAGCTTAGTCGAGGAGTTTAAGATGAAGCCCCACATCAACACC
CCCGTCGGAGGACTCTCTGGAGGGGAGAGGAGGCTGCTGTCACTTGCTAC
TACGTTCCTATCAGACCCACAAATACTGATCTGTGATGAGCCAACCACGG
GGCTGGACAGCTACAACGCCCTCCTCGTGATTGGAGTCCTGAAGAAACTG
TCAGCATCAGGCAGGATCGTCATCTGTTCTGTCCACCAGCCTTCTTGTGA
CCTGTTTAAGGAGTTCAGCTCTATACTCCTAATGGCTGAAGGTAGACTGC
TGTTCCATGGATCGCAGGATGAGTGCAAAGATGTTTTTGAAAGCATAGGT
TTGCTGTGTCTACTGAACTACAACCCAGCAGAGTTCTACATCAGAGCAGT
CAGCTCCAGTAGCAACGTCCATAGACTTGTGGAAATTTCCCAAAACCGGT
CGGAGTACCAGGGAACCAGTTCCCTACGACCCGATTTGATCCACACTTAT
AATAGGCCGTGA
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protein sequence of GSSPFG00022735001-RA

>GSSPFG00022735001-PA ID=GSSPFG00022735001-PA|Name=GSSPFG00022735001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=204bp
MKILLAKVLQRKRPLIFQTEMKLGSCKDRRIKATLDSLVEEFKMKPHINT
PVGGLSGGERRLLSLATTFLSDPQILICDEPTTGLDSYNALLVIGVLKKL
SASGRIVICSVHQPSCDLFKEFSSILLMAEGRLLFHGSQDECKDVFESIG
LLCLLNYNPAEFYIRAVSSSSNVHRLVEISQNRSEYQGTSSLRPDLIHTY
NRP.
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mRNA from alignment at scaffold_23105:62..3373-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00022735001-RA ID=GSSPFG00022735001-RA|Name=GSSPFG00022735001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=3312bp|location=Sequence derived from alignment at scaffold_23105:62..3373- (Spodoptera frugiperda corn)
ATGAAGATCCTATTGGCAAAGGTCCTACAAAGAAAACGTCCATTAATTTT
TCAGACAGAAATGAAACTAGGCAGCTGCAAGGATCGAAGAATTAAAGCTA
CGCTGGACAGCTTAGTCGAGGAGTTTAAGATGAAGCCCCACATCAACACC
CCCGTCGGAGGACTCTCTGGAGGGGAGAGGAGGCTGCTGTCACTTGCTAC
TACGGTAAAAAAACCTAATATTGGACTTTATTGAGAACATTAGATTATAC
TATATCCGATAGATCTTAAACAATTTTAAATACCTTAGTATTATTATGTT
ATCGGCTTACTCGCGTAATTGTTTGACGAGGAATTCGACTAGTTTCAAAC
CTTACTACTAGAGGCTCATATTCATGAGTAGTATTCCATGATTGACGTGG
CGATTGTCGCGCTGCTACTGCTCCTTAGCAGATAACATAATAATTAATTT
GGTATGTCTCACGAAAGTTACAATAAACTTATACCTTAGTATTGATAGGT
ACTAATATGCTTTAGAGTTTTGCATTGCCTACAACCTAATTTGACACGAT
TTCAAGAGATAAGTATGCACAATAAGAATCTATATCTTTAGATCCAAAAT
AGTAGGTATCATTATTTAATTGACCGTTACTCACAAAGCCAGCTGAAAGT
GTCATTTAAAAATTGTTCCGGCAAATAAATATGTAACATTACATTATATC
TTTTCTCACAGTTCCTATCAGACCCACAAATACTGATCTGTGATGAGCCA
ACCACGGGGCTGGACAGCTACAACGCCCTCCTCGTGATTGGAGTCCTGAA
GAAACTGTCAGCATCAGGCAGGATCGTCATCTGTTCTGTCCACCAGCCTT
CTTGTGACCTGTTTAAGGAGTTCAGCTCTATACTCCTAATGGCTGAAGGT
AGACTGCTGTTCCATGGATCGCAGGATGAGTGCAAAGATGTTTTTGAAAG
GTAAGCATAAGTTATTAATTTCATGTCATTTTCATCTCCTATTTTCTAAG
TGTGGGAGTGCCATGCTTCGGCACGAAGGGGCCGGCTCGACTGGAGTGAA
CGCTTGCATTGTGTTTCGTTGTGTGGGTGAGGTTATCAAAGGCCCAATTA
CTCCCCAATGTTCCCAATCTCTGATTCCCCAATAACCCTTAAATGCCTAA
CACCCAAAACGCAGTCAACGCAACGGCAGTGGCGATTGCTTACCATCAGG
TGATTCGTCTGCTCGTTTACCGGCTTATTCCATAACAAAAGTTTAGCAGT
GATCTATACTTAACACGTCCGAGATTTCTATTCCTGGGTTGATTCTAAGT
GAATAAGAAATGCTTTGGGTGGACAAGTCAAGGTCGTCACTATTCATTAG
GGCATCGCCAGTTATATCGATTTAGCCAACACAAATGTAAGATTTTATGA
CCATCTAAAAAGTCATTGGCAGAATTAAAACCATGATCTGTAGGCTTGTT
TAGCAGATTATAAAAAATATTTATATTTACATATTCATAAAAGTGTGTTT
AGGTATATAAAAAATTGCTATATTTAGTTCTTGTTTCATAGCAACCGCCT
ACAAGTTCGTTAAGGCGTAAACTATCAAATGAAGTGTAAAATTATACACA
GATTTGTTCCGGAGTCATCGAAGTTGTTCACCGGTCGACAACATATCGAT
ATTTCATCTTCGAAACGTTATGACATTATTTACTATGATATTTTATTTAG
ACATTCTTTTTTTGTTAAATAATAAAATTTTATAACCGTGTTTAAAAGTG
TCTAGATTCCGATGCGTATTTAACTACTACATAAAAAATAAAAGCTACCA
TTTGACCAAAATTCACGCCTCCTGCTATATAGAATACAAAATCACTTAGT
CAATCAATAACTATTATTTAATTTTGTCGTTTTAATACCTAATAACCTAA
AATCTAAACTTAATATATTATGTATAAGGCTGAAGTTTTGTTTGTTTGAA
CGAGCTAAACGCTGGAACTAGGTACTGGTCCATTTTGAAAATATATTTTT
GTGTTGGATAGTCTATTTATTGAGGAAGGAGAAAGGGAGAAAGAGAGAAA
GAAGCCGATGAGCACGGGTAAAACCGCGCGTAAGAAGCTAATAGGTATAA
AGAATTGAGGATTCAGAAATTAAAAACTTAATCCATTAAAAAAAATCTGA
ACTTGGAAAATACTAATTTTTACACTAGGTACCTATTCTGTATACTAGGT
ATAATCCATTGACGCTTATGGAAAAATAGCATCACTTAATGTGTCATATA
AAAAAAACAAAGACATTTGTTTTTCTGCATGCATATTCAATCGGTCCACT
ACTGAATTTATTATAGCTGATAAAAGCTATATCGCAAAGAACAATAAAAC
AACGCCATTTAGGATTGATTTAAGTCATTTTTATTATGTAAATTATTTTA
TTAATTGCTAAGCTTCTGGCGTGATGGCGATCATAAATTCATTCTTCTCA
AACATTTATGAGCAACATTTAACATATTAAAGAAATTACGCTGTTGGTCT
TCTAGGATTCAAAATATCAAGTGATGATCTTGTCAAATAAATTCATGTTT
AAGTGCTGTAAATTGCGATGGCTGGCCATATTTCAAACGAATATGAGTAA
ACGTTTTGCAGTCTCATTAATCAGAAACGCTACCTACTTATTTTTCTTTA
CATATTTTGGAAAATATTAATAAAACGCATATTATGTTACCACATAACAG
TCTGCCTGCTGCCTGATGCCTGTTAGAACTGTTAACGTACGGTACCCCGT
ACGTTAACAGTTCTAAGAGGCACATTACCGAATTTGAGATTTTTTGTTTT
AAAGGTACTTTTATAACACTGTTTTTTTTTAATCAATTTTTGCGCGAATA
ATCTACACTTTGTAATACAACGCAAGCGTTGTTTCACGTCGGTTTTCTGT
GAGGCTGTGGTATCACTCCAGTCGAGCTGGCCCATTTGTCTCCTACAATC
AAATCGCTTGATCAATGATCATGAAACTTTTAATAGAAAATGACATGATT
ATATCGTCAGTTTCGGTTGCAAATAGACTCTCAAACTGAAGTTTTTCAGC
GATGGACATATCTTTGTACGACTTTCTGAAATCAACAACATCTTCGTTGT
AGCTTTTGTAAAAATAAATTTGACACTTCATTTCTTCTTCCAGCATAGGT
TTGCTGTGTCTACTGAACTACAACCCAGCAGAGTTCTACATCAGAGCAGT
CAGCTCCAGTAGCAACGTCCATAGACTTGTGGAAATTTCCCAAAACCGGT
CGGAGTACCAGGGAACCAGTTCCCTACGACCCGATTTGATCCACACTTAT
AATAGGCCGTGA
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Coding sequence (CDS) from alignment at scaffold_23105:62..3373-

>GSSPFG00022735001-RA ID=GSSPFG00022735001-RA|Name=GSSPFG00022735001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_23105:62..3373- (Spodoptera frugiperda corn)
ATGAAGATCCTATTGGCAAAGGTCCTACAAAGAAAACGTCCATTAATTTT
TCAGACAGAAATGAAACTAGGCAGCTGCAAGGATCGAAGAATTAAAGCTA
CGCTGGACAGCTTAGTCGAGGAGTTTAAGATGAAGCCCCACATCAACACC
CCCGTCGGAGGACTCTCTGGAGGGGAGAGGAGGCTGCTGTCACTTGCTAC
TACGTTCCTATCAGACCCACAAATACTGATCTGTGATGAGCCAACCACGG
GGCTGGACAGCTACAACGCCCTCCTCGTGATTGGAGTCCTGAAGAAACTG
TCAGCATCAGGCAGGATCGTCATCTGTTCTGTCCACCAGCCTTCTTGTGA
CCTGTTTAAGGAGTTCAGCTCTATACTCCTAATGGCTGAAGGTAGACTGC
TGTTCCATGGATCGCAGGATGAGTGCAAAGATGTTTTTGAAAGCATAGGT
TTGCTGTGTCTACTGAACTACAACCCAGCAGAGTTCTACATCAGAGCAGT
CAGCTCCAGTAGCAACGTCCATAGACTTGTGGAAATTTCCCAAAACCGGT
CGGAGTACCAGGGAACCAGTTCCCTACGACCCGATTTGATCCACACTTAT
AATAGGCCGTGA
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Synonyms
The feature 'GSSPFG00022735001-RA' has the following synonyms
Synonym
GSSPFG00022735001-PA
GSSPFP00022735001
GSSPFT00022735001
GSSPFG00022735001