GSSPFG00013663001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00013663001-RA
Unique NameGSSPFG00013663001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11131contigscaffold_11131:3..4089 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00013663001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013663001GSSPFG00013663001Spodoptera frugiperda corngenescaffold_11131 3..4089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013663001-RAGSSPFG00013663001-PASpodoptera frugiperda cornpolypeptidescaffold_11131 3..3858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_11131 3..92 +
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_11131 961..989 +
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_11131 1245..1350 +
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-4Spodoptera frugiperda cornCDSscaffold_11131 1640..1870 +
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-5Spodoptera frugiperda cornCDSscaffold_11131 3005..3140 +
GSSPFG00013663001-RA-CDSGSSPFG00013663001-RA-CDS-6Spodoptera frugiperda cornCDSscaffold_11131 3470..3858 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-1Spodoptera frugiperda cornexonscaffold_11131 3..92 +
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-2Spodoptera frugiperda cornexonscaffold_11131 961..989 +
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-3Spodoptera frugiperda cornexonscaffold_11131 1245..1350 +
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-4Spodoptera frugiperda cornexonscaffold_11131 1640..1870 +
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-5Spodoptera frugiperda cornexonscaffold_11131 3005..3140 +
GSSPFG00013663001-RA-exonGSSPFG00013663001-RA-exon-6Spodoptera frugiperda cornexonscaffold_11131 3470..4089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013663001-RA-UTRGSSPFG00013663001-RA-UTR-1Spodoptera frugiperda cornUTRscaffold_11131 3859..4089 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGATCAATATT
ATGAGCGATATGTAACTCTAGTCAAAGTGAATTACTTCGTACAATTCTAC
TGGTTGATGTGGAGGAACATACAAGCGTTGAAGCGTAACTACACTATATG
GATAGCCGAGTTCTTGCTGCTCATGTTCGTAGGTCTGATAATCTCAGTTC
CCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGACATTCAGAACGTG
GAGGGTCTCCTCTACCTCACGATTACAGAAACGATATTCCTCTTCATATA
CGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATACTGCTTCGGGAGA
CCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTGTCGAAGATGATA
TTCTGGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTAT
ATTCTTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCA
ACTTCGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGCTCATTC
CTATCGGCGACGTTCAACTCAATGGAAACAGCTGCATTGGTATCTGTACC
TTTCGACCTGATTGGCACAATGTTTTCTGGTCTATACTTAAACTTAGCTA
GCGTCACACCGTACATATCATGGCTTAGATTCGTATCAGGTTTCTACTAT
GGCGTTGAAAGCATCTCTATACTCCAATGGGATTCCATCGAGACCATTGA
GTGTGTACAAATCGATGGCATGCCTTGTATAAAGACAGGCCCTGAGGTGT
TGAGAAGGTTTGGTTTTGCTGAAGAGCATTTTTGGCGTAACTGCATCTGT
TTGTTTAGTATGTACTGCATAGCTCATTTCATAGCCTTCCTTATGGTCAT
GAAGAGAAGTAGGGGCACTCCTGTATACTAGAAAATAGTTGAATTGTACA
TAGCTTTTAACTTTAGCATCACTTCGGGCTGCTCTGATATAAACCCGTGC
CATAAAGGTGAACAGGGTCTAGGTCGATTAAGTTTCCCTTATGATAATAT
GCTCTATTAAATGAGTTGTCTTAAAAGCCTTGTTGGTAAACTCAACGTCT
GGATTGGCAGTAATTTTATAGATCTGATGAATTGGCTCAATAAATGTTAT
GAAGTTTTTAAA
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protein sequence of GSSPFG00013663001-RA

>GSSPFG00013663001-PA ID=GSSPFG00013663001-PA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=327bp
SRSDIAAEIDSKVGHVKDETEYFNGETDEKDQYYERYVTLVKVNYFVQFY
WLMWRNIQALKRNYTIWIAEFLLLMFVGLIISVPYNGHFDELDQRDIQNV
EGLLYLTITETIFLFIYAVFITFPSEVPILLRETASGLYAPLPYYLSKMI
FWIPRAVIEPTLFTTLIFLVAGLHGGFMGWLGFNFVCILCANYANAYGSF
LSATFNSMETAALVSVPFDLIGTMFSGLYLNLASVTPYISWLRFVSGFYY
GVESISILQWDSIETIECVQIDGMPCIKTGPEVLRRFGFAEEHFWRNCIC
LFSMYCIAHFIAFLMVMKRSRGTPVY.
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mRNA from alignment at scaffold_11131:3..4089+

Legend: polypeptideCDSexonUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4087bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGTAGGTCCTT
AATATTAAGGTAATTTTAGAAAAAAAAAACTCCCTTAAACCAATCTTAAC
CGATGAGATCTTAACAGAAGATGCATGAAAAGACTGATAAATGTTGATGA
AGCGGAAGAGGTATGTAAGATTCGTAGCAATTGACGTGTCATTGTTTCTA
CCTACCCCCACGGGATACCTCACGCTTGCGTGAGGTGATGTATGTACAAA
AATCGTTTAGTTTTGGTTCTCGTTTTTATGGAAAGGAGGTTTGTGCTATG
GTTTGTTAAAAAATCTACTAATTATAGCAATGTTTCTTCAATTATGTCAG
ACGGAAGCATTCTATAACTTTTGTGTCCAGTCCTACAGTCCTAAACCACT
ATCTTAATGGATTTGCCATTTAATAGTAATAAAATTCAAATGTTTTAACA
TGGTAAAATTAACGTTAGATAAGGGAGTAGACCTTATCTTATCTTTTTTT
AAAAAAGCAAGTCCGATATGGAAACTTTTGGACGTTTTAAGAATAAAAAA
TTAAGCATATCTAAAATTGATCTTTGATCGTTAAGATAGATCAGTTTTTT
ACAAATGTCAAATCTATTAAATCATCAACAGTATCGTGATTCAAAATATT
AATGAATTCATTTTCAATAAACAACTTAAACATTCAGATAGGAAAATGTC
AATACGTAAATAAATAATATTTTTATTAGGCTATTGTCCAAGATAGATAG
ATTCTCACGATGATAACATTACAAATTATGTATAAGAACAAGTATAGAAG
ATTACATTTGAATTTCGTTTTGGAGCTAGATGTGATGATAAGATGATATT
CATTGTAAAATGATATCCAATTAATGATTTTATTACAAATGTTTTTTTCT
TGTTTCAGGATCAATATTATGAGCGATATGTAACTCTGTAAGTTTGTTTC
ATTATTTTTCTTCTTATTTTGACAATTGTTTCTTAACTTCTGTCCCTTTT
TTGCTATTACCGAGATTTTATTTTACCATTAATTTTAAGAGTTTTATTAG
TTTTTCTTTTCCGTTTATCATTTTTACCCATTTTAAACTGATCTCCTGAT
TGTTTTTCGAGATGTATGAAATACTTCTTTGTCATGTGCCTACGTTGTTC
TTCTGGTCAGAATATTTTATTCATTTGTTGATGTATTTGCAGAGTCAAAG
TGAATTACTTCGTACAATTCTACTGGTTGATGTGGAGGAACATACAAGCG
TTGAAGCGTAACTACACTATATGGATAGCCGAGTTCTTGCTGCTCATGGT
AAGCTTCAAATTCTTCATCGTCTTCAGTGTCATCTACTTAAGTTATTAAT
GTTTTGCTTTCCATTCTATAGTCGTTCTTATGTATAAGTAGAATTTGGTA
AAATAAGTGCTTATCATTTTTTTTATTCCACTAATGTCAGTACCAAATGT
AGCTTTATCCTGCAGTTTGTACAATTTCTTTATCGCACTATTAATCAAGC
TCTAATTTTCAGTTCCTTCTAAAAGTAGATGATCCTAACGTCCAATTTTT
AGTTCACCAGTATTAATTTAGTTCTGTCTCCTCACAGTTCGTAGGTCTGA
TAATCTCAGTTCCCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGAC
ATTCAGAACGTGGAGGGTCTCCTCTACCTCACGATTACAGAAACGATATT
CCTCTTCATATACGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATAC
TGCTTCGGGAGACCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTG
TCGAAGATGATATTCTGGGTAAGTTTTGATTTTCTTATAACTAGTATATC
TTTACCTACGTAGTAATTTTTGTTTTCCTTTGACATATTCCAAAAGTCTG
TCTAGTCACTAACATTTACTTATAGAAGGGGAATTAAATAAAGTCTTTAA
GAAAGGTTTCCAAAAAAATATTGTGTAGAAAAAGACCTTTAGATGAAGCT
CTATAACCATGAAAGTATTGGCAATACTATGCGTATCTTACTTCTACAAA
ACTTAACAGAAGAATACATTTATTAAGACGTGATAGATACTCTAGCAGCA
AATCATCATGACGTTGATGTTCTTGTATGAATTGAATACAATGAAAACAG
TTACATTGGCTTATACTCATCCGATTAGAATGACAAAGACTTTGATTCAT
TCAACAAGTTCTTAAATACATAAATCATTCCTATAGTGGGTGTTCAAATC
TGTTCACCGCCAACCATTGCCCATTGTCCACAGAAGTAAATATCGGTGTT
GATGGAATTATAATGTGGTAGAAAGTTTTATTTTTATAGCAAGGCCCTTA
AATTGTGTCATCTACAAACGATCATGGCCAAACCAGTTTAGTGCTACCAT
CGTTAACATTCCGTTTAGTGGTTTTGGAATATATTTTTCTGTGAATCGTA
GCCGTTTCCACATTGGTAATTATTAAAATGTTGATTTTACATAAGTAATC
AATTTATTGGTAAGCTACTGCGGTCGCGTTATCACATAAATCTTGTTTGT
TAATGATTTTTGACTTGCGCATTAAAATATGTCGTAGAACTAGTCCATTA
CTTTATTAAATGAAATCGTTTAAAAATTGTATCGTTAAATATTATATCGT
TGCGTGGTCGCATCTATACCTTGATATGATCTTATATTCTATTAGGCCAT
ATTTATGTAAGATCTATGGAGAAATACTGATTCCTAATACTATCTGGACA
TGCTAAAAACATAATATAAAGCTACCATGTAAGAAAAAGTCATAAAAAGA
ATATAATGTTTCGAATCCGATGCAATGTGGTTAATAAGCGGCAGTTTTTT
TGCATATACAGTTAGGCTATATCATCATCTTCTTCAAACCAAATAAAAGT
CACAAGAAAGACAAATTCATGGCAAATATAATGTTTCTCTTTCTCTCTCT
AGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTATATTC
TTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCAACTT
CGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGTAAGTCCAATG
TTTTTATTTTTATCTAATGGTAGTCTTAGCCTTTGTTCCCTTTTAAGTTC
TATGTAGTTAGTTGACCTTGCTTTATTTCAGTAACAATTATGTACTAGTA
ACTTTAGATTTTGTTGTTCTTATATTAAGAGCGAATGTTGTATATTATTC
ATCTTTGTACAAACTAAAAGAAATAAAATTAATTTTTATATCTAATAAAA
ATTTACTACTATTTAATTCAATTTTATCAGCTGGCAAGGCTATCAAAATT
CTAAATTCAAAATTTATGTGACCACCATTTTAAAATTGGCATTGCAATTC
TCTTTTCGAAATTCCAGGCTCATTCCTATCGGCGACGTTCAACTCAATGG
AAACAGCTGCATTGGTATCTGTACCTTTCGACCTGATTGGCACAATGTTT
TCTGGTCTATACTTAAACTTAGCTAGCGTCACACCGTACATATCATGGCT
TAGATTCGTATCAGGTTTCTACTATGGCGTTGAAAGCATCTCTATACTCC
AATGGGATTCCATCGAGACCATTGAGTGTGTACAAATCGATGGCATGCCT
TGTATAAAGACAGGCCCTGAGGTGTTGAGAAGGTTTGGTTTTGCTGAAGA
GCATTTTTGGCGTAACTGCATCTGTTTGTTTAGTATGTACTGCATAGCTC
ATTTCATAGCCTTCCTTATGGTCATGAAGAGAAGTAGGGGCACTCCTGTA
TACTAGAAAATAGTTGAATTGTACATAGCTTTTAACTTTAGCATCACTTC
GGGCTGCTCTGATATAAACCCGTGCCATAAAGGTGAACAGGGTCTAGGTC
GATTAAGTTTCCCTTATGATAATATGCTCTATTAAATGAGTTGTCTTAAA
AGCCTTGTTGGTAAACTCAACGTCTGGATTGGCAGTAATTTTATAGATCT
GATGAATTGGCTCAATAAATGTTATGAAGTTTTTAAA
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Coding sequence (CDS) from alignment at scaffold_11131:3..4089+

>GSSPFG00013663001-RA ID=GSSPFG00013663001-RA|Name=GSSPFG00013663001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_11131:3..4089+ (Spodoptera frugiperda corn)
TCCAGATCTGATATAGCTGCTGAGATCGACAGCAAAGTTGGCCACGTTAA
GGATGAAACCGAATACTTTAATGGCGAAACTGATGAGAAGGATCAATATT
ATGAGCGATATGTAACTCTAGTCAAAGTGAATTACTTCGTACAATTCTAC
TGGTTGATGTGGAGGAACATACAAGCGTTGAAGCGTAACTACACTATATG
GATAGCCGAGTTCTTGCTGCTCATGTTCGTAGGTCTGATAATCTCAGTTC
CCTACAACGGCCACTTCGACGAGTTGGACCAGCGTGACATTCAGAACGTG
GAGGGTCTCCTCTACCTCACGATTACAGAAACGATATTCCTCTTCATATA
CGCCGTCTTCATTACCTTCCCCAGCGAGGTCCCTATACTGCTTCGGGAGA
CCGCCAGCGGATTGTATGCACCGTTACCTTATTATCTGTCGAAGATGATA
TTCTGGATACCGCGAGCAGTAATAGAACCGACTTTATTCACGACGCTTAT
ATTCTTGGTTGCTGGACTCCATGGCGGGTTCATGGGATGGCTCGGTTTCA
ACTTCGTCTGCATCTTGTGTGCCAACTACGCTAACGCATATGGCTCATTC
CTATCGGCGACGTTCAACTCAATGGAAACAGCTGCATTGGTATCTGTACC
TTTCGACCTGATTGGCACAATGTTTTCTGGTCTATACTTAAACTTAGCTA
GCGTCACACCGTACATATCATGGCTTAGATTCGTATCAGGTTTCTACTAT
GGCGTTGAAAGCATCTCTATACTCCAATGGGATTCCATCGAGACCATTGA
GTGTGTACAAATCGATGGCATGCCTTGTATAAAGACAGGCCCTGAGGTGT
TGAGAAGGTTTGGTTTTGCTGAAGAGCATTTTTGGCGTAACTGCATCTGT
TTGTTTAGTATGTACTGCATAGCTCATTTCATAGCCTTCCTTATGGTCAT
GAAGAGAAGTAGGGGCACTCCTGTATACTAG
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Synonyms
The feature 'GSSPFG00013663001-RA' has the following synonyms
Synonym
GSSPFG00013663001-PA
GSSPFP00013663001
GSSPFT00013663001
GSSPFG00013663001