GSSPFG00026303001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00026303001-RA
Unique NameGSSPFG00026303001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3357contigscaffold_3357:15491..21073 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00026303001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00026303001GSSPFG00026303001Spodoptera frugiperda corngenescaffold_3357 15491..21073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00026303001-RAGSSPFG00026303001-PASpodoptera frugiperda cornpolypeptidescaffold_3357 15491..21073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-8Spodoptera frugiperda cornCDSscaffold_3357 15491..15670 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-7Spodoptera frugiperda cornCDSscaffold_3357 16388..16473 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-6Spodoptera frugiperda cornCDSscaffold_3357 16907..17055 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-5Spodoptera frugiperda cornCDSscaffold_3357 18029..18239 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-4Spodoptera frugiperda cornCDSscaffold_3357 19070..19217 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_3357 19576..19709 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_3357 20479..20592 -
GSSPFG00026303001-RA-CDSGSSPFG00026303001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_3357 20932..21073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-8Spodoptera frugiperda cornexonscaffold_3357 15491..15670 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-7Spodoptera frugiperda cornexonscaffold_3357 16388..16473 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-6Spodoptera frugiperda cornexonscaffold_3357 16907..17055 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-5Spodoptera frugiperda cornexonscaffold_3357 18029..18239 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-4Spodoptera frugiperda cornexonscaffold_3357 19070..19217 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-3Spodoptera frugiperda cornexonscaffold_3357 19576..19709 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-2Spodoptera frugiperda cornexonscaffold_3357 20479..20592 -
GSSPFG00026303001-RA-exonGSSPFG00026303001-RA-exon-1Spodoptera frugiperda cornexonscaffold_3357 20932..21073 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00026303001-RA ID=GSSPFG00026303001-RA|Name=GSSPFG00026303001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_3357:15491..21073- (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCCTGACGGAGCGCGGTTTCTTCAACGGGCTGGTGAACAAGCT
GGCCAACCTGCGCTACCAGCCCACCACGGACGCGCACGCGGATGAAATGG
TGCGCGCTGAGAAAGCCTACGTCAGTCGAGCCATCACTCTACCATCGAAA
CAGATCCCGGACGCGATGTTAGTGGATGACATCCACAAGAACTACGTGTC
GATATTCAAAAAGAGTGTGAACGCTGTCAAGGGAGTCAGCTTTAGCGTCA
AAAAAGGTGAATGCTTCGGTCTGCTGGGTGTGAACGGCGCGGGCAAGTCC
AGCACGTTCAAGATGCTGACTGCGGAGGAGAGCGCCACCAGGGGGGACAT
CTTCGGGAACGGGTACCGCCTCACACGGGGGAACCCACAGTACCTACAGA
CGCTGGGCTACTGCCCGCAGTTCTTCGGGCTGGACATGTTCCAGACCGGG
CGCGACAACCTGCGGCTCGTACTCACGCTGCGCGGGTACGACCAGAAGCA
CGTCGACCAAGAAGTCGACAACTGGATACGCATCGTTGGGCTGGAGAAGT
ACGGCGACCGCGTGGTGGAGCAGTACTCTGGGGGCTGCGTGCGGCGGCTG
GGCGCGGCCGCGGCGCTGTGCGGGGGCGCCGCGCTGTGCCTGCTGGACGA
GCCCAGCGCCGGCGTCGACGTCGCCGCGCGCCGCCGTCTGTGGCACGCGC
TGCGCCGGGGGCTGCGCCACCAGCGGGCCGTCATCATCACCTCGCACAGT
ATGGACGAGATGGAGGCGCTGTGCTCCCGCATCGCGATCCTGTCCACGGG
GCGGGTCCGCGCGCTGGGCACGGCCGCCGCGCTGCGGGCCGCGCACGCGC
AGGGACACGCCGTCGTCTTCAAAGTCACCAACGCACAGTCTACTGATGAA
GTGGACGGCGCCAAGCAACAGGTGGATCGGCTGAAGGGGAAACTGCAGGA
GACCTTCAACTGTTCACTCAAAGACGAACATAAGACAATGTTACACTACC
ACATCAACGATACGATGAGGTACAGCGAGCTCTTCACAGAGTTGGAGGCT
CTAAGGTCGGAGTTTCCAAACCTGATTGAGGACTACTCCGTCACGGAGAC
AACCCTGGAGGAGGTGTTCCTCTCCTTCGCCAAGGAACAACAGGCGATCA
ACCAGACTGTCTAA
back to top

protein sequence of GSSPFG00026303001-RA

>GSSPFG00026303001-PA ID=GSSPFG00026303001-PA|Name=GSSPFG00026303001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=388bp
MVFLTERGFFNGLVNKLANLRYQPTTDAHADEMVRAEKAYVSRAITLPSK
QIPDAMLVDDIHKNYVSIFKKSVNAVKGVSFSVKKGECFGLLGVNGAGKS
STFKMLTAEESATRGDIFGNGYRLTRGNPQYLQTLGYCPQFFGLDMFQTG
RDNLRLVLTLRGYDQKHVDQEVDNWIRIVGLEKYGDRVVEQYSGGCVRRL
GAAAALCGGAALCLLDEPSAGVDVAARRRLWHALRRGLRHQRAVIITSHS
MDEMEALCSRIAILSTGRVRALGTAAALRAAHAQGHAVVFKVTNAQSTDE
VDGAKQQVDRLKGKLQETFNCSLKDEHKTMLHYHINDTMRYSELFTELEA
LRSEFPNLIEDYSVTETTLEEVFLSFAKEQQAINQTV.
back to top

mRNA from alignment at scaffold_3357:15491..21073-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00026303001-RA ID=GSSPFG00026303001-RA|Name=GSSPFG00026303001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=5583bp|location=Sequence derived from alignment at scaffold_3357:15491..21073- (Spodoptera frugiperda corn)
ATGGTGTTCCTGACGGAGCGCGGTTTCTTCAACGGGCTGGTGAACAAGCT
GGCCAACCTGCGCTACCAGCCCACCACGGACGCGCACGCGGATGAAATGG
TGCGCGCTGAGAAAGCCTACGTCAGTCGAGCCATCACTCTACGTACGTAT
TGTTATACTGATTTCATCTTTATCTTTATTCGTGTTAAGGTTGTTTTTAG
AATGCTTATGCATTTACAATACAGATAAATAAATGTCAATTCAATTTTTT
TAGTTCGTAATTGTTAAACAATTCTAAACTTAATTCCAATGACGATATAG
TTTCTTATAGAATGCTAGGAATAATTAAGTATTTTACTTTTTTTAAAACA
ATCAAAAAATAGACTTTGATACTGTGGATCATAAGTCTTATTTTCGACCG
ATAAATGCTATGATAACTTAAACCAACTGTCTACTTTATCTGTCAAACAA
TAAGGTCTAAAATTATTTGTTTATTTTCCAGCATCGAAACAGATCCCGGA
CGCGATGTTAGTGGATGACATCCACAAGAACTACGTGTCGATATTCAAAA
AGAGTGTGAACGCTGTCAAGGGAGTCAGCTTTAGCGTCAAAAAAGGTGAC
ATTTTCAATTATAGTTATCACAGGTGCTAATGCTGAGATGACGAACCTTT
ACGTAACATCGTGCCATATTTTGTCCAAGAAAACACGGAACAAAATTAAA
TATTTTTGCACACATTGCACGGCAGTTGCCCAGCAACTGTGCCAAACATG
CAGCCAAAATGCATTTGTTTACTGAATACCTTTATCACTACTCCCAGTCT
TCCCGCGGGTTTTGTTACAGTCAGAGAAATACACAGAGGAAAATAAAGAT
GGCAGCACCGCTCCCTACCAAACCTGGACCATTTTTTTTTCTAGGCTACA
AAGCGGGGAGATATCTCCCTAAAACAACCAATTACTCCGCACTTGTCTGT
CGTTTTTACGAAAGAAATTAATGTATTCTGTATTCTGTTCTGTTCACGTA
ACGGTTTAACAAGGAACTCGACTAGTTTCAAGCCATGCTAGAGGCTTATA
TTCATGAGCAGCATTGTAACACGACGCAGCGATTGCCGCGCTGCTACTTA
CCAAGAACAGATAGTAAAGTTCCCTAAGAAAAGGAGGATCCTCCGACCAG
GCGAGGTGATCAGCCTGGCGGGCTTTCTGCCCCAACTGTTGTTGGTTGGG
ATTTTCTATCCGTGTTAATTCGCATGTAAACTTCATATGTGCGATGCAGG
ATATTTATGACGTCATCCGTTGATTTGCTCATCGATAGTCTATGTGCGAC
TTCTGTCATCTGTCACTTGTCACTTGTCGGAGTGTCGCCACATAGTATTC
TGTGTTTCCTGCAGGTGAATGCTTCGGTCTGCTGGGTGTGAACGGCGCGG
GCAAGTCCAGCACGTTCAAGATGCTGACTGCGGAGGAGAGCGCCACCAGG
GGGGACATCTTCGGGAACGGGTACCGCCTCACACGGGGGAACCCACAGGT
TGGTCGTTTGTACTGGTAGAGATGTATCAGAAAATTGGACTTTTCTTAAT
CAACTTTTTCGTTTTGACATTATGTATGTTTGTCCGTGATTATCCTGCGA
TTAGCTGAACTAAAGTGGGTGTACATAGTGGCATTACGTGCGATAATGTG
CACCTCTGCCTACCCCTTCGGGGATTAAAGGCGTGACGATATGTATGTAG
CTGAACTGATTTTGATGCGGGTTTTCAGAAAAGGATAAGGTTATAGATTT
GAAACGTCTTTAAATAAGTCTACTTACTACTTGTATGCCTATAAACATAA
TTTAAATTACTTCCCCTCCATGTAAGCATGATTAATGTTGTTGCCTTCCC
CCGCAGTACCTACAGACGCTGGGCTACTGCCCGCAGTTCTTCGGGCTGGA
CATGTTCCAGACCGGGCGCGACAACCTGCGGCTCGTACTCACGCTGCGCG
GGTACGACCAGAAGCACGTCGACCAAGAAGTCGACAACTGGATACGCATC
GTTGGTGAGTATCGCTAGCATAGGCGTAGCCAGGTTTTAGTTTCGGGAGG
GGTTCAAGAAAGTCGACCCATGAAATGTGTGACCAAAAAAAAAATTAAAA
AAAAAACCGTACATGACGAAAAAAAATATTTATGTAATGTGTAATAAACA
GATTCATAGGTAGTCATACAGACCTTTGCCAAACAGGGGATGTACTATGC
TAACTAGAAACATAATGTCATGACTCAAACAATCAAACACTCTGTAATGA
TGTCTAGGTACGCATGTTTGGGGGGGGGGTTGAACCCACCGGCCTGGCTA
CGCCTATGATCGTTACCCTTCATCATTGTTCCATCAGGTGTAGTTTATTA
CACGGGCCTTGTGGAGTCTCGAGCAAATTTCCGTGCATTTAGGCGTTTTT
GCCATACCTTTTATTGGAAGCAAGTATCACAGCTCACGCATAGGAGCCAT
TTAGTTTTAAGTAAAAAATCTCCGTGGTGCTTGGCGACTGAATTTCTGCC
AGTTGTGCAATCTCTTTTGTGTCTTTAGGCTTGTCATTCTATCTCCTGCA
TTAAATTCACCGAGGGAAGTGGAAACTATCGTTTTCTTTTTCTTCTCCTC
TAATAACATCTTCTGATTTGTTTCGTTGCGGGATCCAAGACAGTCATTCA
TTTCCCTGGGAAACACTTCTTGGCTTCGGCTTACTTCGGCTTACAAGAGT
TGCAGCGGTAAGGGAGGTTGTGGCGGACTTGTCCTTTAAAAAAAAGACCG
GGCCTTCGTTCCTCGTGCAGGACGAAGTTTATCCGGTGGGTCGGTTAGTT
CGTGGAGTATAATGTAATATAATGTATATGGTAGGGCTGGAGAAGTACGG
CGACCGCGTGGTGGAGCAGTACTCTGGGGGCTGCGTGCGGCGGCTGGGCG
CGGCCGCGGCGCTGTGCGGGGGCGCCGCGCTGTGCCTGCTGGACGAGCCC
AGCGCCGGCGTCGACGTCGCCGCGCGCCGCCGTCTGTGGCACGCGCTGCG
CCGGGGGCTGCGCCACCAGCGGGCCGTCATCATCACCTCGCACAGGTACC
CCACTACCACTACCACTACCACTACCACTACACACTCTGGCACGCGCTGC
GCCGGGGGCTGCGCCACCAGCGGGCCGTCATCATCACCTCGCACAGGTAC
CCCACTACCACTACCACTACCACTACCACTACACACTCTGGCACGCGCTG
CGCCGGGGGCTGCGCCACCAGCGGGCCGTCATCATCACCTCGCACAGGTA
CCCCACTACTTTATTTTTCAAGCATTCGGAAACTCATTATAAATATCATT
ATGTCATGACTAGATTCTACCCATAAAACCTTCATCCCAGATGTCACTTT
TATGTCGTTTATGCCTGTTATAGCCCAAAATAATATTTGTTTTGTTCTCC
AGCCTTTTAAATCTAAACAAATAAAAGTTCAAAAGTAAAAAGCATAAAAT
ACCTATTACTACTTATACAAACCAACTAATAGTTGTAAGTCTATGAACAC
CGTAGTGTAGCCACGATATTCATTCATTTATTCCTATTTCTACAACAATA
CAGACTTACAGTCATATAACCAAACTAGCTACTTCCGCGCGGTTTCACCC
GCTCTGCTCGGCTCCTTTTGGTCATAGCGTGATGTTTAATAGCCTATAGC
CTTCCTCGATAAATGCACTATCCAACACAAAAAGAATTATTCAAATCGGA
CCAGTAGTTCCGGAGATTAGCGCGTTCAAACAAACAAACTCTTCAGCTTT
ATAATATCTATACTAACTATACTAATATTATAAAGCTGAAGAGTTTGTTT
GATTGTTTGTTTGTTTGTTTGTTTGTTTGAACGCGCTAATCTCAGGTCCG
ATTTGAATAATTATTTTTGTGTTGGATAGCGCATTTTTCGAGGAAGTTTA
TAGGCTATAAATCATCACGCTACGATCAATAGGAACCGAGTAGAGCGAGT
GAAACCGCGCGGAAGTAGCTAGTTAGTATAGATAACGATATTGACCCTAA
CATTGTTTGTGTGTGTAGTATGGACGAGATGGAGGCGCTGTGCTCCCGCA
TCGCGATCCTGTCCACGGGGCGGGTCCGCGCGCTGGGCACGGCCGCCGCG
CTGCGGGCCGCGCACGCGCAGGGACACGCCGTCGTCTTCAAAGTCACCAA
CGCACAGTCTACTGATGGTAAGCACTTACTACATTATTAAAAAGTCAAAG
TCAAAGCATTTATTTCAATTAATCCTAAATAAGGCACTTATGAAACGTCA
AATTGAATTGTCCGTCAGTCTGTCTGTCAGTGAAGCTAGGCGCTCGTTCC
AAAGTGTAGCTTCGAATGGAGAAGAACGAGCAAGAAACTCCATCGTTACA
TTAACACTAACTGTTTAGATTAAGCCTTTAACTGTCAAATCCTCCACTAA
CGTAGGTCACCTACGTGGCAGAATGTGTTAAATACATTTCTAACTACATA
CTGACTGACCATTTTTATTTTGATTTAAAGACATTACCTATAAAATCTGA
ATTTGTATCTTTGTTTTTTTTTCATATTTTAAGTGAATATAAAAATGGTT
ACTGGTGTTAAAATTAGAATAGAGAGAAATATTGGTATTAAAACTTACAG
AAGTGGACGGCGCCAAGCAACAGGTGGATCGGCTGAAGGGGAAACTGCAG
GAGACCTTCAACTGTTCACTCAAAGACGAACATAAGGTCAGTACGTCGCG
TCCTACATGCTTTTAGTATAACTATATTTTTTACGGTATAAGCCGGTAAA
CAAGCTGACTGATCACCTGATGGTAAGCAATCGCCGCTGCCCATGGAAAC
ACCGGCAGCGTTACATGTGGATTGCCGGCTTTTTTTTATTTTTTAAAAAA
ACGTTGCCCCACATTGGGATTTTCTCCTGTGTCGTGGGTGCGTTTACAAA
CATACAAGTTCACATGCACATGACACCCAGACCCGAAACAACAATTTGTG
GATCACACAAAGAGTTGCTCCGTGCGGGAATCGAACCCGCTACCCGTTGC
GCGGCAGCCAGTTGCCCAGCCACCGCACCAACCCTGCAGTCTTTTTGGGG
GGGTAGGAATTTAAGGATTGTTGGGGAATCGAGCATTGGGAAAATTAGGC
ATAGGGGGGTAAGAGGGCATCGACAAAAACTAAATACAACGCAAATGTTG
CTTCACGTCGGTTTTCGGAAAGGCCTTGGTATCACTCCGGTCGAGCCGGC
CCAGTCGAGTCGAAGCATGGCTCTCCCACACTTTGGTACGACGGTTTGTA
AACGCACCAACGACACAGGAGAAAATCCTAGCGTGGGACAACGTTTAAAT
AAAAGATAATTGAATGAAAATAAGCGTAATTTAAAACTGTGCTACAAATG
AGAATCCGAACATTGATTTTAAGAATGATGAAATAAATGATTTTGTCCCG
CAGACAATGTTACACTACCACATCAACGATACGATGAGGTACAGCGAGCT
CTTCACAGAGTTGGAGGCTCTAAGGTCGGAGTTTCCAAACCTGATTGAGG
ACTACTCCGTCACGGAGACAACCCTGGAGGAGGTGTTCCTCTCCTTCGCC
AAGGAACAACAGGCGATCAACCAGACTGTCTAA
back to top

Coding sequence (CDS) from alignment at scaffold_3357:15491..21073-

>GSSPFG00026303001-RA ID=GSSPFG00026303001-RA|Name=GSSPFG00026303001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_3357:15491..21073- (Spodoptera frugiperda corn)
ATGGTGTTCCTGACGGAGCGCGGTTTCTTCAACGGGCTGGTGAACAAGCT
GGCCAACCTGCGCTACCAGCCCACCACGGACGCGCACGCGGATGAAATGG
TGCGCGCTGAGAAAGCCTACGTCAGTCGAGCCATCACTCTACCATCGAAA
CAGATCCCGGACGCGATGTTAGTGGATGACATCCACAAGAACTACGTGTC
GATATTCAAAAAGAGTGTGAACGCTGTCAAGGGAGTCAGCTTTAGCGTCA
AAAAAGGTGAATGCTTCGGTCTGCTGGGTGTGAACGGCGCGGGCAAGTCC
AGCACGTTCAAGATGCTGACTGCGGAGGAGAGCGCCACCAGGGGGGACAT
CTTCGGGAACGGGTACCGCCTCACACGGGGGAACCCACAGTACCTACAGA
CGCTGGGCTACTGCCCGCAGTTCTTCGGGCTGGACATGTTCCAGACCGGG
CGCGACAACCTGCGGCTCGTACTCACGCTGCGCGGGTACGACCAGAAGCA
CGTCGACCAAGAAGTCGACAACTGGATACGCATCGTTGGGCTGGAGAAGT
ACGGCGACCGCGTGGTGGAGCAGTACTCTGGGGGCTGCGTGCGGCGGCTG
GGCGCGGCCGCGGCGCTGTGCGGGGGCGCCGCGCTGTGCCTGCTGGACGA
GCCCAGCGCCGGCGTCGACGTCGCCGCGCGCCGCCGTCTGTGGCACGCGC
TGCGCCGGGGGCTGCGCCACCAGCGGGCCGTCATCATCACCTCGCACAGT
ATGGACGAGATGGAGGCGCTGTGCTCCCGCATCGCGATCCTGTCCACGGG
GCGGGTCCGCGCGCTGGGCACGGCCGCCGCGCTGCGGGCCGCGCACGCGC
AGGGACACGCCGTCGTCTTCAAAGTCACCAACGCACAGTCTACTGATGAA
GTGGACGGCGCCAAGCAACAGGTGGATCGGCTGAAGGGGAAACTGCAGGA
GACCTTCAACTGTTCACTCAAAGACGAACATAAGACAATGTTACACTACC
ACATCAACGATACGATGAGGTACAGCGAGCTCTTCACAGAGTTGGAGGCT
CTAAGGTCGGAGTTTCCAAACCTGATTGAGGACTACTCCGTCACGGAGAC
AACCCTGGAGGAGGTGTTCCTCTCCTTCGCCAAGGAACAACAGGCGATCA
ACCAGACTGTCTAA
back to top
Synonyms
The feature 'GSSPFG00026303001-RA' has the following synonyms
Synonym
GSSPFG00026303001-PA
GSSPFP00026303001
GSSPFT00026303001
GSSPFG00026303001