GSSPFG00014622001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	GSSPFG00014622001-RA
Unique Name	GSSPFG00014622001-RA
Type	mRNA
Organism	Spodoptera frugiperda corn (Fall armyworm - corn variant)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6826	contig	scaffold_6826:1576..5957 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Spodoptera frugiperda corn annotation OGS2.2	2015-12-04

Properties


Property Name	Value
Full name	GSSPFG00014622001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
GSSPFG00014622001	GSSPFG00014622001	Spodoptera frugiperda corn	gene	scaffold_6826 1576..5957 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00014622001-RA	GSSPFG00014622001-PA	Spodoptera frugiperda corn	polypeptide	scaffold_6826 1576..4464 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00014622001-RA-CDS	GSSPFG00014622001-RA-CDS-1	Spodoptera frugiperda corn	CDS	scaffold_6826 1576..1738 +
GSSPFG00014622001-RA-CDS	GSSPFG00014622001-RA-CDS-2	Spodoptera frugiperda corn	CDS	scaffold_6826 1904..2004 +
GSSPFG00014622001-RA-CDS	GSSPFG00014622001-RA-CDS-3	Spodoptera frugiperda corn	CDS	scaffold_6826 2412..2567 +
GSSPFG00014622001-RA-CDS	GSSPFG00014622001-RA-CDS-4	Spodoptera frugiperda corn	CDS	scaffold_6826 3759..3944 +
GSSPFG00014622001-RA-CDS	GSSPFG00014622001-RA-CDS-5	Spodoptera frugiperda corn	CDS	scaffold_6826 4306..4464 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00014622001-RA-exon	GSSPFG00014622001-RA-exon-1	Spodoptera frugiperda corn	exon	scaffold_6826 1576..1738 +
GSSPFG00014622001-RA-exon	GSSPFG00014622001-RA-exon-2	Spodoptera frugiperda corn	exon	scaffold_6826 1904..2004 +
GSSPFG00014622001-RA-exon	GSSPFG00014622001-RA-exon-3	Spodoptera frugiperda corn	exon	scaffold_6826 2412..2567 +
GSSPFG00014622001-RA-exon	GSSPFG00014622001-RA-exon-4	Spodoptera frugiperda corn	exon	scaffold_6826 3759..3944 +
GSSPFG00014622001-RA-exon	GSSPFG00014622001-RA-exon-5	Spodoptera frugiperda corn	exon	scaffold_6826 4306..5957 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
GSSPFG00014622001-RA-UTR	GSSPFG00014622001-RA-UTR-1	Spodoptera frugiperda corn	UTR	scaffold_6826 4465..5957 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold_6826:1576..5957+
coding sequence from alignment at scaffold_6826:1576..5957+

spliced messenger RNA

>GSSPFG00014622001-RA ID=GSSPFG00014622001-RA|Name=GSSPFG00014622001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_6826:1576..5957+ (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCTCCGTTTGTTCGCGCACATCCTGGTCGGCTTCTTGATAGGTGC
ACTGTACTACGACATCGGTGACGACGGCTCCAAAGTACTCTCAAACCTTG
GTTTCCTGTTCTTCAATATGCTGTTCCTCATGTACACTTCTATGACCATC
ACTATTCTTAGTTTTCCCCTGGAGATGCCTGTGCTGGTGAAAGAACACTT
CAATCGATGGTACTCGCTACGGTCCTACTACCTCGCCATCACTGTATCGG
ATATACCGTTCCAGGCAATATTCTGTGTGATCTACGTGGTGATAGTGTAC
CTGCTGACGTCGCAGCCGCCGGTGTGGTTCCGGTTCGCGATGTTCCTCTC
CTCCTGTCTGCTCATCTCCTTCGTGGCGCAGAGTGTGGGACTTGTAGTCG
GTGCTGCTATGAATGTTCAGAACGGCGTGTTCCTCGCTCCAGTAATGTCG
GTACCGTTCCTGCTGTTCAGTGGTTTCTTCGTGTCATTCAACGCGATCCC
GGTGTACCTGCGCTGGATCACGTACCTGTCCTACATCAGATACGGGTTCG
AGGGCACCGCTCTCGCCACCTACTCCTTCGACAGACCCAAGCTTAAGTGC
CATCAGACTTACTGTCACTTCAAGAACCCTGAAACCACTTTGGAGGAGTT
GGACATGTTGAACGCAGACTTCACCCTAGACATCGCAGCTCTCTGTCTAA
TCTTCCTCGTCCTACGTATATCCGCGTTCCTGTTCCTGCGCTGGAAACTC
AAATCTACCAGATAAGCGATATTACACCTACAGTTACATATATTTAGGGT
AGCAAACCAAACGACAAGTTATTTTAAGTTTAGGGTTGTCACTTTGTCAT
CACCCATGTGATATCGACGAACTTACGGTGCCGAATGTTGAGTTTATAAT
GCAATTTTAAAAGCGATAGCTGCTTATTTATATGGAATTTATGCCAAAGC
GGTCACTATAGGAGGAATTGGAATAACAAAACTAATATTTCTTTTAAATA
TTGTTATTATAACAGCTCTGTTTGTTTATGTGGTTGCTAACAGATTTTAT
AATTATGAGACAAAGTAACAATCGTTAGTTAGTTGTATTTACGCAGTTAT
TGTGATAAAGATGTTATATATACTGTAGAACAACGGGACTGTACATTTCG
AATATTATATGACAAAGTATGGGTCCTTACTATTCAGATGTTAAGAAATC
TTACATGAAAACTACGTCCTGTCCTTATGTCCATTTTCATTGCAAAAACA
TACATTAACTAGTTATTAATATCGTAAAATTATTGTAGGAAAAAGAAGGA
CTATTGGGGTCAATAAAACTTTGACAGATAGAAGTTTGCTTCAAGCAACT
TAATGACATTCATCCTTTGGTAGATTACTACTGACCCCAAATTGAAAAGA
CTAAGGATTAGTAATTTTGATATTGTATTATAATGCATGACAATTATTTC
ACATTGTGTCTTTAATGCTCAATTCATGGCCTTATTGCAATTTTCAATAT
TCATTGATTTTTAACAGAATGTAATGAAATGTGATAGCTTCGTGTGATAT
AAAGGAAAGTTCACAAAAAATAGAAATTATAACAGTTATAAAAATACAAT
TATTAATTTTATATATGAAAATTTTTATTCTATACACTATGGGCTTTTAC
GTTTTTTTTTATGCCACAGACTATCCGAACCATAGATAAATAATAGTAAT
CAGAGATTTTATAACAGATAATATATAAATAGTAAGATCTGAAACTATCA
GAAGCCGAGCCTATATATCATTGTTAGAAATTATAAAAAAAGTAAATTAT
AATTATGTGAATTCATTGATTATTTTGCTCATAAATTATTCATATTTCTT
GCCCTACCGGCTTGCCGTTAATTTTATGTCAAAGATATACGTAGTTTCAT
TCAAATAGTAACGGTAATTTCAATTACTTTTTTAAATATATTTATAAAGA
CTGCTGTTCAATTCAGATTTTTATTCTGATAAATGAAAAATATATCTGGA
TTATTTCGATATTTGAAAATAATATTGTTTGTATGTTTTTTAAAGTTTAA
ATTACCGTTGCTATTAAAATAAATAGTAATAATTACGCATTCAGGGATCA
TGGTATTTTTCATTGTACTTAGTGTTGTAATTATTTAGATAAAATATTGT
GGTCCAATTAATTATTATTGATAATGGTTAGTTGTAATGGTTTATAGAAA
GTATGATGTTTTGTACCTATTATATATATTTTTTAAAATAAATGGTTTAT
GAAATGTA

protein sequence of GSSPFG00014622001-RA

>GSSPFG00014622001-PA ID=GSSPFG00014622001-PA|Name=GSSPFG00014622001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=255bp
MYLRLFAHILVGFLIGALYYDIGDDGSKVLSNLGFLFFNMLFLMYTSMTI
TILSFPLEMPVLVKEHFNRWYSLRSYYLAITVSDIPFQAIFCVIYVVIVY
LLTSQPPVWFRFAMFLSSCLLISFVAQSVGLVVGAAMNVQNGVFLAPVMS
VPFLLFSGFFVSFNAIPVYLRWITYLSYIRYGFEGTALATYSFDRPKLKC
HQTYCHFKNPETTLEELDMLNADFTLDIAALCLIFLVLRISAFLFLRWKL
KSTR.

mRNA from alignment at scaffold_6826:1576..5957+

Legend: polypeptideCDSexonUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>GSSPFG00014622001-RA ID=GSSPFG00014622001-RA|Name=GSSPFG00014622001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4382bp|location=Sequence derived from alignment at scaffold_6826:1576..5957+ (Spodoptera frugiperda corn)
ATGTACCTCCGTTTGTTCGCGCACATCCTGGTCGGCTTCTTGATAGGTGC
ACTGTACTACGACATCGGTGACGACGGCTCCAAAGTACTCTCAAACCTTG
GTTTCCTGTTCTTCAATATGCTGTTCCTCATGTACACTTCTATGACCATC
ACTATTCTTAGTTGTGAGTATTCGAATACAGGTTTTATTACTTATTGACT
TAGGTTGTTTTTAGATTGTCTTACTGTTCTAGTGAAAGAAACGACAAGCA
ATATCATACTTTAATTTTTAATGAATAAGGTCGAAACTCCTTTGTGCCAT
GATCTGATTACAATGTATTGGTTTCCAGTTCCCCTGGAGATGCCTGTGCT
GGTGAAAGAACACTTCAATCGATGGTACTCGCTACGGTCCTACTACCTCG
CCATCACTGTATCGGATATACCGTTCCAGGTAACACTTATACTATATCTT
TATGCTAATTTTGTCATATAAGTATAATATAATATTTACATATTATATAA
AGCCTTTTATAACTTAAAGGGGTGATAAAAGTTCAGAATATAATATTAAG
TTATATTGTACCAGAGCTGTTTAGCCCTTTAGAAGGTAATAATTACAATA
AACCATTTCAAACTCCAAGCTGCTTACTGCTAAGAATTATTCGATATTGA
AAATTCCGTATAAGGGTTGTGTGAAAATCATGGTCGAGACCCCGAAAGTA
AAGGTATTCGCAGCTGAGCATAGACTTACAGATGGGGGGTAGATTAATTA
CATACATATTGAAATTAAACAAAATAATATTTATGTATACGATACTAGAT
CTAAATGATTAATGTTTAATTATTTGCTCGTTCCAGGCAATATTCTGTGT
GATCTACGTGGTGATAGTGTACCTGCTGACGTCGCAGCCGCCGGTGTGGT
TCCGGTTCGCGATGTTCCTCTCCTCCTGTCTGCTCATCTCCTTCGTGGCG
CAGAGTGTGGGACTTGTAGTCGGTGCTGCTATGAATGTTCAGGTATGTAC
TGTTATTCTATTTTTGTATAAACATGTATTAAGTTAATGATGTTTTACTG
CTTACTCACTTTACTGTTTCATATGATTGACATTATATTTTGTGACTATA
CTTTTAGTCATAATGTTTCATCACTATGAGCCATTAGAAATTAGTCGATA
TACTTGTGAAGTTGTTTTATATTATCTCAACGTGCTATCAAAGTCAAAGT
CAAAATTATATATTTAAAAATAGACCGGGAATACACTTTTGAACTTTAAA
GTAAATATTACAATATTAAAATAAAGCGTCTGTCTATCGGTCAGTCTTCT
AGTGAAGCTATTTGCTCGTTCTAAAGTACACTTTATAGGAATCTGTAGAT
TCCTATCCTTCTTCTAATATTTATACCAAGTTCTTTAAGGTCCTCTATCA
AACGTCATTCTTCAATCGGAAAATTACACAATTGAGTTATTTTTATTACT
TAGTTCATTCATATTAGCATTGAATGTGCAAAACAGTAATTTGAATTTCA
TACGTCCTATATTTATTTTGAATGGGCACAATGAAATGCTTCATTTTATT
GTGCCTTTTGCCAAAATGGCCTTCGTAACCCGTGCATTGACGTGGTTTGT
GCATTTTAAATATTAATCTGAAATATTTACCTGGATTTGTAAGGTTGTTG
CAATGTCGGTTGTCAATAAACTGCAGTATTTTTAGTTATTTTTATGTTTA
TTAGTTTTTATCTGTTTATGGATAGAGGCGAGTTTGTATTAAACTTATGT
TAATGTAATTTGGACGTTAAGATTTAATTGAAAGAGTTTAAAACCGATGA
TTAGTTTTTTAAAGAACATAAATAAAAAATTATGAGCCTTTAATCATCTC
CTTACGATAGTAATCCAGGTTACGATACTTAACGCCTGTTTCACTACCTT
CATATAAGTACCCGATAAACTTAAGTGACAGATAGTTCATACAAATTACA
TTTTAAATTACCATTTACCTGGGTCATAGCGGCTATCCAGACATTGCGAA
ACAGAACCTTAGCATGTCAGTAAGAGTTGAACTCACGACGCAATTCGCAG
AAACACACTTTTTGCCAATTATTATAAAGCCTATTTAAAAATGAAGGATG
AATGATACAGCAATTATGTTTGAAAATCGACCAATTAACAAACAAATCAA
CCAATATTAATCTATATATTTTTCTGTCCACAGAACGGCGTGTTCCTCGC
TCCAGTAATGTCGGTACCGTTCCTGCTGTTCAGTGGTTTCTTCGTGTCAT
TCAACGCGATCCCGGTGTACCTGCGCTGGATCACGTACCTGTCCTACATC
AGATACGGGTTCGAGGGCACCGCTCTCGCCACCTACTCCTTCGACAGACC
CAAGCTTAAGTGCCATCAGGTAAGGATTATTCAATTTTGAGATGATTTTT
CCTTATGAAACAACGGCGTGTAACAAACACGGCGGCAAACGAAACGGCTT
AGAACTAGTTTTAACAAGATTGCAACGAGACCGCGTTCGGTATTCTGATT
GGCTGGTAAGGAGTCGGAATAGTTTTATTTTAAAATAAACATTGCCCCAC
ATTTATGGATCACACAAACAGTTGTTCCGTACGGTGTTCGTAGTCGTACG
CTTGCAGTAAATTTTGTTTTTTGATAAGAGTAAAGATTGTGATTGCCATC
TTTTGTAGAAGAGTTTCGTTTAGTAGTGAAATATGGTGTTTATATTTAAA
TAAAAATCTAATCATGCTCTTCTTTCCCAGACTTACTGTCACTTCAAGAA
CCCTGAAACCACTTTGGAGGAGTTGGACATGTTGAACGCAGACTTCACCC
TAGACATCGCAGCTCTCTGTCTAATCTTCCTCGTCCTACGTATATCCGCG
TTCCTGTTCCTGCGCTGGAAACTCAAATCTACCAGATAAGCGATATTACA
CCTACAGTTACATATATTTAGGGTAGCAAACCAAACGACAAGTTATTTTA
AGTTTAGGGTTGTCACTTTGTCATCACCCATGTGATATCGACGAACTTAC
GGTGCCGAATGTTGAGTTTATAATGCAATTTTAAAAGCGATAGCTGCTTA
TTTATATGGAATTTATGCCAAAGCGGTCACTATAGGAGGAATTGGAATAA
CAAAACTAATATTTCTTTTAAATATTGTTATTATAACAGCTCTGTTTGTT
TATGTGGTTGCTAACAGATTTTATAATTATGAGACAAAGTAACAATCGTT
AGTTAGTTGTATTTACGCAGTTATTGTGATAAAGATGTTATATATACTGT
AGAACAACGGGACTGTACATTTCGAATATTATATGACAAAGTATGGGTCC
TTACTATTCAGATGTTAAGAAATCTTACATGAAAACTACGTCCTGTCCTT
ATGTCCATTTTCATTGCAAAAACATACATTAACTAGTTATTAATATCGTA
AAATTATTGTAGGAAAAAGAAGGACTATTGGGGTCAATAAAACTTTGACA
GATAGAAGTTTGCTTCAAGCAACTTAATGACATTCATCCTTTGGTAGATT
ACTACTGACCCCAAATTGAAAAGACTAAGGATTAGTAATTTTGATATTGT
ATTATAATGCATGACAATTATTTCACATTGTGTCTTTAATGCTCAATTCA
TGGCCTTATTGCAATTTTCAATATTCATTGATTTTTAACAGAATGTAATG
AAATGTGATAGCTTCGTGTGATATAAAGGAAAGTTCACAAAAAATAGAAA
TTATAACAGTTATAAAAATACAATTATTAATTTTATATATGAAAATTTTT
ATTCTATACACTATGGGCTTTTACGTTTTTTTTTATGCCACAGACTATCC
GAACCATAGATAAATAATAGTAATCAGAGATTTTATAACAGATAATATAT
AAATAGTAAGATCTGAAACTATCAGAAGCCGAGCCTATATATCATTGTTA
GAAATTATAAAAAAAGTAAATTATAATTATGTGAATTCATTGATTATTTT
GCTCATAAATTATTCATATTTCTTGCCCTACCGGCTTGCCGTTAATTTTA
TGTCAAAGATATACGTAGTTTCATTCAAATAGTAACGGTAATTTCAATTA
CTTTTTTAAATATATTTATAAAGACTGCTGTTCAATTCAGATTTTTATTC
TGATAAATGAAAAATATATCTGGATTATTTCGATATTTGAAAATAATATT
GTTTGTATGTTTTTTAAAGTTTAAATTACCGTTGCTATTAAAATAAATAG
TAATAATTACGCATTCAGGGATCATGGTATTTTTCATTGTACTTAGTGTT
GTAATTATTTAGATAAAATATTGTGGTCCAATTAATTATTATTGATAATG
GTTAGTTGTAATGGTTTATAGAAAGTATGATGTTTTGTACCTATTATATA
TATTTTTTAAAATAAATGGTTTATGAAATGTA

Coding sequence (CDS) from alignment at scaffold_6826:1576..5957+

>GSSPFG00014622001-RA ID=GSSPFG00014622001-RA|Name=GSSPFG00014622001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_6826:1576..5957+ (Spodoptera frugiperda corn)
ATGTACCTCCGTTTGTTCGCGCACATCCTGGTCGGCTTCTTGATAGGTGC
ACTGTACTACGACATCGGTGACGACGGCTCCAAAGTACTCTCAAACCTTG
GTTTCCTGTTCTTCAATATGCTGTTCCTCATGTACACTTCTATGACCATC
ACTATTCTTAGTTTTCCCCTGGAGATGCCTGTGCTGGTGAAAGAACACTT
CAATCGATGGTACTCGCTACGGTCCTACTACCTCGCCATCACTGTATCGG
ATATACCGTTCCAGGCAATATTCTGTGTGATCTACGTGGTGATAGTGTAC
CTGCTGACGTCGCAGCCGCCGGTGTGGTTCCGGTTCGCGATGTTCCTCTC
CTCCTGTCTGCTCATCTCCTTCGTGGCGCAGAGTGTGGGACTTGTAGTCG
GTGCTGCTATGAATGTTCAGAACGGCGTGTTCCTCGCTCCAGTAATGTCG
GTACCGTTCCTGCTGTTCAGTGGTTTCTTCGTGTCATTCAACGCGATCCC
GGTGTACCTGCGCTGGATCACGTACCTGTCCTACATCAGATACGGGTTCG
AGGGCACCGCTCTCGCCACCTACTCCTTCGACAGACCCAAGCTTAAGTGC
CATCAGACTTACTGTCACTTCAAGAACCCTGAAACCACTTTGGAGGAGTT
GGACATGTTGAACGCAGACTTCACCCTAGACATCGCAGCTCTCTGTCTAA
TCTTCCTCGTCCTACGTATATCCGCGTTCCTGTTCCTGCGCTGGAAACTC
AAATCTACCAGATAA

Synonyms

The feature 'GSSPFG00014622001-RA' has the following synonyms


Synonym
GSSPFG00014622001-PA
GSSPFP00014622001
GSSPFT00014622001
GSSPFG00014622001

Orthology

View orthology data for GSSPFG00014622001-RA