GSSPFG00013838001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00013838001-RA
Unique NameGSSPFG00013838001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8357contigscaffold_8357:1699..6278 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00013838001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013838001GSSPFG00013838001Spodoptera frugiperda corngenescaffold_8357 1699..6278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013838001-RAGSSPFG00013838001-PASpodoptera frugiperda cornpolypeptidescaffold_8357 1699..5726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013838001-RA-CDSGSSPFG00013838001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_8357 1699..1762 +
GSSPFG00013838001-RA-CDSGSSPFG00013838001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_8357 4290..4454 +
GSSPFG00013838001-RA-CDSGSSPFG00013838001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_8357 4819..5075 +
GSSPFG00013838001-RA-CDSGSSPFG00013838001-RA-CDS-4Spodoptera frugiperda cornCDSscaffold_8357 5385..5726 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013838001-RA-exonGSSPFG00013838001-RA-exon-1Spodoptera frugiperda cornexonscaffold_8357 1699..1762 +
GSSPFG00013838001-RA-exonGSSPFG00013838001-RA-exon-2Spodoptera frugiperda cornexonscaffold_8357 4290..4454 +
GSSPFG00013838001-RA-exonGSSPFG00013838001-RA-exon-3Spodoptera frugiperda cornexonscaffold_8357 4819..5075 +
GSSPFG00013838001-RA-exonGSSPFG00013838001-RA-exon-4Spodoptera frugiperda cornexonscaffold_8357 5385..6278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00013838001-RA-UTRGSSPFG00013838001-RA-UTR-1Spodoptera frugiperda cornUTRscaffold_8357 5727..6278 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00013838001-RA ID=GSSPFG00013838001-RA|Name=GSSPFG00013838001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=1380bp|location=Sequence derived from alignment at scaffold_8357:1699..6278+ (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCTTTTCTACAAACCTGTGGGTTGCCGTGTCCGAAGCATCATAA
CCCTGCTGATTTTAGTCTCAGTATCCAGTTCATTCACCATGTGATGTGTG
GCTTATTAGTAGGCACTTGTTTTTTCAACATGGCCAATGATGGCACGCAG
ATGTTTAACCACCTCAAACTGTGTGTTGGACTCGTAATATTCTTCGCGTA
TACACAGATCATGGTTCCAGTACTTGTATATCCCCAAGAAGTGAAACTCG
TGAAGAAAGAACATTTCAACTGCTGGTATAGCCTGAACCCTTACTACGCT
GCCCTCACAGTGTCGAAGCTCCCAGTCCAAATAACGTTCAACATAATATT
CTGCACGATCGTCTACTTCATGGCTGGAGTTCCGTTCACTGTGATGCGGT
TTGTCGCGTTCTGTCTCGTTGGGAACGTTGTGTCCTTGGCTGCTGAAGGC
TTCGGCATGGCTATTGGATCCGTCTTCAATGTTACGAATGGCTGTGCCAT
CGGGCCTTCAGCGATCGCTCCATTCCTCGGTCTCGCTATCTACGGCTTCG
ACTTCGCCCACGAGATCCCTCTCCTAATGAACATCCTCATGAAGACTTCC
TTCATCAGATGCGGTATTGTGGCCATGGTCCTCACCATCTTCGGTTTCGA
CCGTCAGCCCTTAGATTGCGAAGACATGTACTGCCACTTCGCTAAACCTG
AGGTTCTCATCAAGTATTTGGATATTGAGAACAGTTCTGTCTGGTATGAG
ATCCTTACTATGTTCGGAATCATGTTTGTCTTCAGATCCCTATGTTATAT
TGGCCTCAGGTGGCGATTCGCTACATGAGACTTCTATCCACATAGTCTTT
GTATGAGCTCGACCGTAAATTGTGATATAAGCATTACACATTTCTGTTAG
TACAAAAATTACTTTTCGATTTCTTGTGATAATTTAAGATTTAAATTATT
AAGTTGTAGGTATTTGAATACCATTTTATTTTGTATGTAGTTACTGATGC
TTTATTCATCATGTCCAGCTATTTGAATGGGATATTGTAATTTATTTTAA
TTGCTAGGTAAATTTGTTTATATTGGGTATTTGTCTCGAATTGATGTATA
AATCGCTTTCATTACACTTTCGACTGTAAATAATGATTATGTTACTAATG
ATACAAAACTGCGAGGGCGTTTTGAAGAGAAATACCAGTTTTTATTATAG
TTCTCCAATTACGTATCATAATTAGTAAAAATCAAGTAATTCATTGATAA
ACATTTCATATACTTAACGCTGGCATACCAACTTGAGAACATTTTCATTC
CATTATATTTTTTTTTGTCACAAAACACCATAGATATATACGTAGTTATG
TATCCAGCCAAAGATACTGTTTACAGATAC
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protein sequence of GSSPFG00013838001-RA

>GSSPFG00013838001-PA ID=GSSPFG00013838001-PA|Name=GSSPFG00013838001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=276bp
MVPFLQTCGLPCPKHHNPADFSLSIQFIHHVMCGLLVGTCFFNMANDGTQ
MFNHLKLCVGLVIFFAYTQIMVPVLVYPQEVKLVKKEHFNCWYSLNPYYA
ALTVSKLPVQITFNIIFCTIVYFMAGVPFTVMRFVAFCLVGNVVSLAAEG
FGMAIGSVFNVTNGCAIGPSAIAPFLGLAIYGFDFAHEIPLLMNILMKTS
FIRCGIVAMVLTIFGFDRQPLDCEDMYCHFAKPEVLIKYLDIENSSVWYE
ILTMFGIMFVFRSLCYIGLRWRFAT.
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mRNA from alignment at scaffold_8357:1699..6278+

Legend: polypeptideCDSexonUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00013838001-RA ID=GSSPFG00013838001-RA|Name=GSSPFG00013838001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4580bp|location=Sequence derived from alignment at scaffold_8357:1699..6278+ (Spodoptera frugiperda corn)
ATGGTGCCTTTTCTACAAACCTGTGGGTTGCCGTGTCCGAAGCATCATAA
CCCTGCTGATTTTAGTAAGTGTTTTTTTATATATGTATACTTGTTATCTA
TAACTTCATGCATTGAAACGGGTTCAAAGATAGACTTAACAGAAAAATCT
TGGTGGAGGATACTGCTATATATATTACCTGCTTAGCTATCCTGTAACTG
TAAGTGTAGTAAGTGTGGGAGAGCCATTCTTCGATACGAATGGCCCCACA
GAAACGACGTAAAGCAACGCTTGCGTTGTGTTTCATGTGTAAGTGAGGTT
ACCGGGGGCCCAATTACCCTCTTCCCAATCCCCGATTCCCAAAAACCCCT
TAAATTCCTAACTCCCAAAAGGCCAGGTGTCCATGAACGGCGATGATTGC
TTACTATCAGGTGATCCCTTTGCTCGTTTATCGGTTGATATCATAAAAAA
TCTTTATTTTCTTAACTGGAGAAGTACCACGTAACTTGCTGACTGCCTGA
CTCCAACCTTTACACTACTTACAAGCAATCACAGTATACCTAGTTACTCA
TTGAACGACGTTGACGCAATTTAACTCCATTAATCATCGTGCCTATTCTA
GGTTGCAATTAACAATGCAATAAGTTACTGTCCTATGACTGGAAACAATA
GGAATGTACTTTACTGGTATAAACAGAAGGCCAGAAGTAGATACATTGAC
TGTAAAATGTTTTAAGATTGAGTCATTTTCAATTAAACTAGATACCTAAT
GTAAAAATGATATAAGATAAGCCCAATCCAATATTAGCGTTCGTGGTCTT
CCTTGCGTGGTTAAAAGAAAATGGTAGCGTATAACAATAAAACTGTACCC
TTAATATTCGGCTGATTGGCCGTCACGAAGGAACCAACCAATCTGAGCTC
CGAACACGCTCTCGTTTCGTTTTCGTTAAGCGTAAAGCATACTCGTACTA
AGGGTACACACAGTACCCCAAAGCTGATACTCTGCAACGTGATATTTTAA
TAAAGACAAACAAATAACACAATAATTATAATAAATGTTGCATCAGCGTC
CAACAGTTCAATAGTCTACCTAGTAAAAGCAGCTGTGAACTAGGCAACTA
CTTAAGTAATCTGCAAGGGAAAAGAGCGAGTACTGCAAGCAAAACAAAGC
CCAACACATTTGTAATTCAAATAACTGCTTAATTACGTAAAGTGTTACAG
GAATTTTAAACAAGCCATTGTAGTATTGTACTTCTTACCTCACGTGGTCA
GTTAGGTACTATTTGGAATCAACTGTTACCATCTAGACTCGATTATTTTT
CTATTCAATTCCATTTATTTGGTTAATTAACTTTTTCTACCGAATTGTAG
TTAAAATTTTCCAGACAAATAGGCATGTTATTGTCTTTATTATAATTTTC
GTGAGACATAGGAACTAAACTAATAATTATGTTTTGATGATGACTAAAAT
TGTCGAGTTCCTCGTCAAATAGTTACGTAATCAAGCCGAAAAACATATTA
ATTAATATACGTTATTGTCTGTTACTGTAGATACGTAATGATTAAATTAA
TACAATATTGAATGTCCTGTTGACTGATACAAGTGCGACTGCTTAATTAA
GACAGACTTCGATTCCTGTAGCCATGTTATTGTTTGGTTTCTTACTTTTC
TCAAAACAGATTATGCTTTTTGTAGACACCTTTAACTAATTTGTCCAATA
AAATTTTTCAGTTATAGAAATAACAGAAACACCGGAATACATAACGATAC
TATCCAAAGAGATTATGAACGGGAAACTGTACAAATCAGCAAAATTGGAC
CAACCAGCGATCGAGCCAAACGCGAACCAAATGCAGCTAAAAATCAGCTA
CCAGACTGACGATGCGAACGAAACCGAGATAATCCTATCAAATGAAAAAT
GCACATATAAAGTAACGAAATACGATGGTTCAAGTGCCTCTGTAAGTTCT
TCGTCTAGCCAGCTTTCGAATGGAAACTCTTCGATGGCGTGGATGAAGAT
GCAGAAATCAGACACAATGGAATTCTCCACAACGTACTGCGAACAATTCT
GCATATTGCTGAAGAGGATGTTGACGCAAATATTCAGGAATAAACAAGGT
ATGGTTGAACATTTTTCCATTTGCAACTTATTTAGACTGAGTAGAGCCCG
CTCAACGTCAACAGACGTTGCGGCAGGCTCAGAAAGAGATGATGGGGTAA
GCTAACACCTACGATTGGATTGACCACAGATAGCTCTGCACAAATAGGGC
TGGAAGGAGAGTAGGGTGGCCTTTGCCCTGCAGTGGGAAGATCACGGCTA
AAAACAAAACAAACCTTTTTAGCGACGATGCTTCTTAAAAACAGCATTAT
ATGCTCAGTTTACTGGAAGAATGTATACCTATCTTGCTAAATAATGCAGC
TAAAACAGAAATAAAAACATTACTTAGACTCTTAAGTTCTTGAGACAGAA
AATTAACTAGTTCCGCATCCTTATTGACCACTTCCATCAGCAGGTTACAC
TCCATTATCGATACATAATCAGTTTTTTTCACTACCTTTATACCGTTTAA
ATTCTACAGAAACTTCATTACTTCTTTATCTCTCATTCCAGGTCTCAGTA
TCCAGTTCATTCACCATGTGATGTGTGGCTTATTAGTAGGCACTTGTTTT
TTCAACATGGCCAATGATGGCACGCAGATGTTTAACCACCTCAAACTGTG
TGTTGGACTCGTAATATTCTTCGCGTATACACAGATCATGGTTCCAGTAC
TTGTATGTAAGTACATATTTCTTTAATGGTTATTCGAAACTAATTATACA
CCAGTTGTCTCATTTGTCACTTGTGTTCCACACTTATGTAGTTTTCAGGT
CTAAAAGATTAAAGAACATATTACCAGCTATCTATGTGTAGAGGTCTATG
GCATTCTGTGTAGATACATAGAATCTGAAGTTAGTTGATAAAAACTGGGC
ACAATTCTAGAGTTCGTGCTTTTTTATTTAATACAAATTTAACATCTAAA
GTACTGATAAAACTTTGTCAGATTCGATAAGTGAATCCCATATGAAGAGC
ATGGAGACCAATGCCTCAATAAATAAAGATTTTGTGAATTCAAAATTTAC
ATAAATTTTATCGATTCCAGATCCCCAAGAAGTGAAACTCGTGAAGAAAG
AACATTTCAACTGCTGGTATAGCCTGAACCCTTACTACGCTGCCCTCACA
GTGTCGAAGCTCCCAGTCCAAATAACGTTCAACATAATATTCTGCACGAT
CGTCTACTTCATGGCTGGAGTTCCGTTCACTGTGATGCGGTTTGTCGCGT
TCTGTCTCGTTGGGAACGTTGTGTCCTTGGCTGCTGAAGGCTTCGGCATG
GCTATTGGATCCGTCTTCAATGTTACGGTGAGTTTTGTCACTTATTTTAT
CAAAGAAATCAGTTCCTCAGATATTTAAATCAGGGATCTACTGTAGATCC
TGGCTTACATGAGTTACAGCGATTTGGAAGGTTGTGGCAGGCTTGTCCCA
GCAAAAGTGTCTGCCCATTTTTGGTTCATATATTGGTCTAAATCACTGAT
GATCAACAGAAGAAGTTTTATGACGGGTATTCTCTTTATTAGCCTTTTCA
TAAAGCTTTCTTCAAATTACATGGGGCAAACAATAAGAATCATATTATGC
AGAGTTCAACTAACAAGTTTATTTGTATTTTTCCAGAATGGCTGTGCCAT
CGGGCCTTCAGCGATCGCTCCATTCCTCGGTCTCGCTATCTACGGCTTCG
ACTTCGCCCACGAGATCCCTCTCCTAATGAACATCCTCATGAAGACTTCC
TTCATCAGATGCGGTATTGTGGCCATGGTCCTCACCATCTTCGGTTTCGA
CCGTCAGCCCTTAGATTGCGAAGACATGTACTGCCACTTCGCTAAACCTG
AGGTTCTCATCAAGTATTTGGATATTGAGAACAGTTCTGTCTGGTATGAG
ATCCTTACTATGTTCGGAATCATGTTTGTCTTCAGATCCCTATGTTATAT
TGGCCTCAGGTGGCGATTCGCTACATGAGACTTCTATCCACATAGTCTTT
GTATGAGCTCGACCGTAAATTGTGATATAAGCATTACACATTTCTGTTAG
TACAAAAATTACTTTTCGATTTCTTGTGATAATTTAAGATTTAAATTATT
AAGTTGTAGGTATTTGAATACCATTTTATTTTGTATGTAGTTACTGATGC
TTTATTCATCATGTCCAGCTATTTGAATGGGATATTGTAATTTATTTTAA
TTGCTAGGTAAATTTGTTTATATTGGGTATTTGTCTCGAATTGATGTATA
AATCGCTTTCATTACACTTTCGACTGTAAATAATGATTATGTTACTAATG
ATACAAAACTGCGAGGGCGTTTTGAAGAGAAATACCAGTTTTTATTATAG
TTCTCCAATTACGTATCATAATTAGTAAAAATCAAGTAATTCATTGATAA
ACATTTCATATACTTAACGCTGGCATACCAACTTGAGAACATTTTCATTC
CATTATATTTTTTTTTGTCACAAAACACCATAGATATATACGTAGTTATG
TATCCAGCCAAAGATACTGTTTACAGATAC
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Coding sequence (CDS) from alignment at scaffold_8357:1699..6278+

>GSSPFG00013838001-RA ID=GSSPFG00013838001-RA|Name=GSSPFG00013838001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_8357:1699..6278+ (Spodoptera frugiperda corn)
ATGGTGCCTTTTCTACAAACCTGTGGGTTGCCGTGTCCGAAGCATCATAA
CCCTGCTGATTTTAGTCTCAGTATCCAGTTCATTCACCATGTGATGTGTG
GCTTATTAGTAGGCACTTGTTTTTTCAACATGGCCAATGATGGCACGCAG
ATGTTTAACCACCTCAAACTGTGTGTTGGACTCGTAATATTCTTCGCGTA
TACACAGATCATGGTTCCAGTACTTGTATATCCCCAAGAAGTGAAACTCG
TGAAGAAAGAACATTTCAACTGCTGGTATAGCCTGAACCCTTACTACGCT
GCCCTCACAGTGTCGAAGCTCCCAGTCCAAATAACGTTCAACATAATATT
CTGCACGATCGTCTACTTCATGGCTGGAGTTCCGTTCACTGTGATGCGGT
TTGTCGCGTTCTGTCTCGTTGGGAACGTTGTGTCCTTGGCTGCTGAAGGC
TTCGGCATGGCTATTGGATCCGTCTTCAATGTTACGAATGGCTGTGCCAT
CGGGCCTTCAGCGATCGCTCCATTCCTCGGTCTCGCTATCTACGGCTTCG
ACTTCGCCCACGAGATCCCTCTCCTAATGAACATCCTCATGAAGACTTCC
TTCATCAGATGCGGTATTGTGGCCATGGTCCTCACCATCTTCGGTTTCGA
CCGTCAGCCCTTAGATTGCGAAGACATGTACTGCCACTTCGCTAAACCTG
AGGTTCTCATCAAGTATTTGGATATTGAGAACAGTTCTGTCTGGTATGAG
ATCCTTACTATGTTCGGAATCATGTTTGTCTTCAGATCCCTATGTTATAT
TGGCCTCAGGTGGCGATTCGCTACATGA
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Synonyms
The feature 'GSSPFG00013838001-RA' has the following synonyms
Synonym
GSSPFG00013838001-PA
GSSPFP00013838001
GSSPFT00013838001
GSSPFG00013838001