SFRICE023373-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE023373-RA
Unique NameSFRICE023373-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_003199contigSFRU_RICE_003199:3..3343 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE023373
eAED0.21
QI0|1|0.9|1|1|1|10|131|502
AED0.21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE023373SFRICE023373Spodoptera frugiperda ricegeneSFRU_RICE_003199 3..3343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023373-RASFRICE023373-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_003199 3..3212 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023373-RA-exonSFRICE023373-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_003199 3..53 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_003199 249..388 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_003199 610..752 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_003199 844..1029 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_003199 1142..1335 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_003199 1417..1588 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_003199 1694..1910 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-8Spodoptera frugiperda riceexonSFRU_RICE_003199 2029..2135 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-9Spodoptera frugiperda riceexonSFRU_RICE_003199 2462..2594 +
SFRICE023373-RA-exonSFRICE023373-RA-exon-10Spodoptera frugiperda riceexonSFRU_RICE_003199 3047..3343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_003199 3..53 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_003199 249..388 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_003199 610..752 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_003199 844..1029 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_003199 1142..1335 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_003199 1417..1588 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_003199 1694..1910 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-8Spodoptera frugiperda riceCDSSFRU_RICE_003199 2029..2135 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-9Spodoptera frugiperda riceCDSSFRU_RICE_003199 2462..2594 +
SFRICE023373-RA-CDSSFRICE023373-RA-CDS-10Spodoptera frugiperda riceCDSSFRU_RICE_003199 3047..3212 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE023373-RA-three_prime_UTRSFRICE023373-RA-three_prime_UTR-21Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_003199 3213..3343 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=1640bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATTTTCTTCATCCACCCCGGCGGGTTCTACTCGATGTCCG
GCCGCAGCGACCTGGCCGGCCCTCACTACCTACTGGACAGAGATGTCGTC
CTTGTCACCATCAACTACAGGCTTGGATCCTTAGGCTTCATGAGTACGGG
AGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTCGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCCTGCATAT
GATCTCGCCCATGGCTAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAGGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGTCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCGAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCCCGTCTTACAAAAC
GAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCCCCGAT
ATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACGTTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCACAAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCG
TCGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTGC
GGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTAGGACTGGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGTT
ACATTTACACGGAATATTAAAATGTTAATAAACTGATTCAGAATGTTGTA
ATTTAATATTGTAAAATTTTGTACCCGATATTAAATAAAT
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protein sequence of SFRICE023373-RA

>SFRICE023373-PA ID=SFRICE023373-PA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=503bp
YRGIRYADPPVGALRFQPPKLKLQYEGIVDASEEGPACPLPAPPTYYVDE
DCLTVNVYTPTHNSTKKLPVIFFIHPGGFYSMSGRSDLAGPHYLLDRDVV
LVTINYRLGSLGFMSTGDALAPGNNGMKDQVAALKWVQRNIAAFGGDPNL
VTITGCSAGSISVILHMISPMAKGLFHRGIAMSASPVGKGVEAITHQRHL
AVRQAQILNCPTDNSSAIVDCLMTKPWRELGDSLPKFWEFGEGDPVGLWG
PVVEPDFGQERYLPINPLDAIKEGKMHTVPLIVSQTTDEFFWKAFPVLQN
ETLLKAMNEEWERVAPISFMLPKENRAAAVQKLREVYLKGNKLANDKPSE
KALGQLYGDSVIGFGVHRLANLMCRHSKHPVWYSEFAYVGNNSHYEDSHG
KPQGAAHHDDLLYVFTLSYRFPVISPDSKHSHVVDEMTALWYNFARYGDP
NPRGDTPELGGLRWPAMTAADRRYLHRGPQLHVRQNLFEDRFKVWDDLYP
IQ.
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mRNA from alignment at SFRU_RICE_003199:3..3343+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3341bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GGTAACATCCGCATATACCGTGTAATCTAATCCACGACAAAACACACCAC
AAATCTGCAGCCTATAAGAGACCAGTGCTGGACTATAGACCCCTCTACCG
GTCCCTAGAGGTACATATTTCTTTTGAGGAAGAAAGAGGCTTCTCATTTT
CGTTTTCAACCATGCAGTATAAGTAATTCGTTCCTTGTGTCTGCAGCCGC
CGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGGAGGGC
CCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAGGACTG
CCTCACTGTCAACGTCTACACGCCGACACACAACAGGTAATCACCATTTC
TTTCTGCTGATCTAATCACACATACACTAGCACGCCACAGAGCTCAATCT
TGTCTTTTTGCATTCAACTTCTGCAAGTCTTTTAGATCGTAACTACACCT
TGCTGGGGAGCGCTATTCCAGTTGAAACTGCAACAAACGTGACCGAACCA
CTTCAGCTTATCTATGAACTATTTCTATAATAATAATTACTTTCTATTTT
GTCGCAGCACCAAAAAGCTCCCCGTGATTTTCTTCATCCACCCCGGCGGG
TTCTACTCGATGTCCGGCCGCAGCGACCTGGCCGGCCCTCACTACCTACT
GGACAGAGATGTCGTCCTTGTCACCATCAACTACAGGCTTGGATCCTTAG
GTAGTCACCGAACTCCTGAATTAATTGCCTTTCTTTTGTTCCTCCAATTC
CACCTTCCAAAGAAGAATTTGACTAAGCTTGTTTTGTCTAGGCTTCATGA
GTACGGGAGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTC
GCCGCCCTCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCC
GAACCTCGTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCC
TGCATATGATCTCGCCCATGGCTAAAGGTAATCAGTACTGTCTTACTATG
GAAGTACTTGAAGATATCTGCTACCAGAACTAGCTGTAGAGTGAATTATC
CGGGTAGTGGGCCTTTGTACATTAAAGCAATGTTTCTAGGTCTCTTCCAC
CGCGGCATAGCAATGAGCGCGTCTCCTGTAGGCAAGGGAGTGGAAGCTAT
AACTCATCAGCGCCACCTCGCAGTACGCCAGGCACAGATCCTCAACTGTC
CGACTGACAACTCGTCCGCCATCGTCGACTGTCTTATGACCAAGCCTTGG
AGGGAGCTCGGAGACTCACTGCCGAAATTCTGGGTACGTTTTTATTAAAA
GAACTTTTGAAAAATGAGACAGGATACTGAGAATGGCCAGAAATAAAGTA
CTGTGTTGTTGCAGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCGTAAGTAACCATAG
TTTTAGCAAATATTTATAAGTATATCAACACAACAACTTTGTTAATAAAT
TTAAATAATGTATACTATTGCCCTAACTTGCTTACTTCTAGCCGTCTTAC
AAAACGAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCC
CCGATATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAA
ACTTAGAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAA
GTGAGAAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGA
GTACACAGGTAAGGCGATAATTTAGTTTTTGGAACTATGTAAATTAATTT
TGATATGGGAACGCTACTTAATCATAACAGAGTTTATCATTATTCTCCAC
TTAACACAGCGTTGATGTATGCGCAGGCTGGCCAACCTAATGTGTCGTCA
CTCCAAGCATCCAGTGTGGTACTCGGAATTCGCGTACGTTGGGAACAACT
CCCATTATGAGGACTCTCACGGAAAACCACAAGGTAAATTCTTTTCTGAC
TGACACTAAATTCTGGTGGATTTGTTTTGTGCTAATAAACAGATGATTTG
CCGTTAGTCTTGAAAGTCTTAGGATAGAAAATGGGTAGAAAAAGCAATTT
GTTTATCTAACATAGGTTTTTTTTTGAGGGGGTAAATCATCCAATGACTT
CTCTCGCCCTGGGCGAGGCGAGAGGGAGTGTCTGACTCTTACTGACTAAA
AACCACCCTGTTCCTACTCCTGCCTTTCGAACATCTAACATAGGTACAAG
TGTGTTAGTTAAATAAGTTGTTCAAGTACAGTACAGGTAATAAGTTGTAC
ACTGTGCAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCTG
AGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCGT
CGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGGTAAGACA
CCACCACTTAAACAATCATCGTAGGTATTACTTTTGTAAAGATGGAAAAC
CACCAAATGTTTCCTCACGCTCTAGGTGACGTGCGACGCTAGAGAGGGCC
ATACTTTGACCACTACCCCGTTCCTATTTTCACCCTAGTCTTTTCTTTTT
TGAAGACAGGGAAGAAACCTTCAGAAGGCTCCTAGCCGAAAAACTAGGGA
GACTTAAGTAACTTACTAAAACCCCATCGGTGGCCACCGTCAACACCTGT
AAGGGCTATCTGACATTCTAATAGATCTGCTCCGGAGACCCCACTGTGCA
ACGCCTGCTAAAACATACTTATGGAAGTGTGCCTCTCCCTTGACTTCTGC
ACTGACTCAAAGAAATAAAGAGATGACAAGGAGGATTGTGACATCATCAA
ATAAAAGTAAAGTAGAGTAATAGCTAATTGTTTGGTCCCCCCAGAGACCC
GAACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCA
TGACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTG
CGGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCC
CATACAGTAGGACTGGAGGACTGTAGCTGAACTAGCTGAGACTAGCGTGT
TACATTTACACGGAATATTAAAATGTTAATAAACTGATTCAGAATGTTGT
AATTTAATATTGTAAAATTTTGTACCCGATATTAAATAAAT
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Coding sequence (CDS) from alignment at SFRU_RICE_003199:3..3343+

>SFRICE023373-RA ID=SFRICE023373-RA|Name=SFRICE023373-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1509bp|location=Sequence derived from alignment at SFRU_RICE_003199:3..3343+ (Spodoptera frugiperda rice)
TACCGCGGGATACGGTACGCGGACCCACCCGTCGGGGCACTGCGGTTCCA
GCCGCCGAAGTTGAAGTTGCAGTACGAAGGCATAGTGGACGCGAGCGAGG
AGGGCCCCGCCTGCCCTCTGCCGGCGCCTCCTACTTACTATGTCGACGAG
GACTGCCTCACTGTCAACGTCTACACGCCGACACACAACAGCACCAAAAA
GCTCCCCGTGATTTTCTTCATCCACCCCGGCGGGTTCTACTCGATGTCCG
GCCGCAGCGACCTGGCCGGCCCTCACTACCTACTGGACAGAGATGTCGTC
CTTGTCACCATCAACTACAGGCTTGGATCCTTAGGCTTCATGAGTACGGG
AGATGCACTCGCCCCCGGTAACAACGGCATGAAGGACCAGGTCGCCGCCC
TCAAGTGGGTGCAGAGGAACATCGCAGCGTTCGGCGGCGACCCGAACCTC
GTCACGATCACCGGCTGCAGCGCCGGCTCTATCAGCGTCATCCTGCATAT
GATCTCGCCCATGGCTAAAGGTCTCTTCCACCGCGGCATAGCAATGAGCG
CGTCTCCTGTAGGCAAGGGAGTGGAAGCTATAACTCATCAGCGCCACCTC
GCAGTACGCCAGGCACAGATCCTCAACTGTCCGACTGACAACTCGTCCGC
CATCGTCGACTGTCTTATGACCAAGCCTTGGAGGGAGCTCGGAGACTCAC
TGCCGAAATTCTGGGAGTTTGGTGAAGGTGACCCAGTGGGTCTCTGGGGT
CCGGTGGTAGAGCCGGATTTCGGGCAGGAGCGGTACCTGCCTATCAATCC
ATTAGATGCTATTAAAGAAGGCAAAATGCACACCGTGCCACTCATCGTGA
GTCAGACCACTGACGAATTTTTCTGGAAGGCATTCCCCGTCTTACAAAAC
GAAACGCTATTAAAGGCAATGAATGAGGAGTGGGAAAGGGTCGCCCCGAT
ATCGTTCATGCTACCGAAGGAGAACCGTGCCGCTGCGGTGCAGAAACTTA
GAGAGGTGTACCTCAAGGGGAACAAGTTGGCCAATGATAAACCAAGTGAG
AAAGCACTCGGACAACTTTATGGAGACTCCGTTATCGGGTTTGGAGTACA
CAGGCTGGCCAACCTAATGTGTCGTCACTCCAAGCATCCAGTGTGGTACT
CGGAATTCGCGTACGTTGGGAACAACTCCCATTATGAGGACTCTCACGGA
AAACCACAAGGTGCGGCCCACCACGACGACCTGCTGTACGTGTTCACGCT
GAGCTACCGGTTCCCCGTCATCTCGCCAGACAGCAAGCACTCGCACGTCG
TCGACGAGATGACTGCGCTCTGGTACAACTTCGCCAGATACGGAGACCCG
AACCCGCGCGGCGACACGCCGGAGCTGGGCGGGCTGCGCTGGCCCGCCAT
GACAGCGGCGGACAGGAGGTACCTGCATCGCGGGCCGCAGCTCCACGTGC
GGCAGAACTTGTTCGAGGACCGGTTCAAGGTGTGGGACGACTTGTACCCC
ATACAGTAG
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Synonyms
The feature 'SFRICE023373-RA' has the following synonyms
Synonym
SFRICE023373-PA
SFRICE023373
maker-SFRU_RICE_003199-augustus-gene-0.5-mRNA-1