SFRICE012479-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE012479-RA
Unique NameSFRICE012479-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_003886contigSFRU_RICE_003886:24695..36787 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE012479
eAED0.16
QI71|1|1|1|0.90|0.83|12|461|620
AED0.16
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE012479SFRICE012479Spodoptera frugiperda ricegeneSFRU_RICE_003886 24695..36787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE012479-RASFRICE012479-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_003886 24948..36326 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE012479-RA-exonSFRICE012479-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_003886 24695..24756 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_003886 24939..25095 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_003886 26598..26804 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_003886 31305..31493 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_003886 31964..32107 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-6Spodoptera frugiperda riceexonSFRU_RICE_003886 32596..32719 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-7Spodoptera frugiperda riceexonSFRU_RICE_003886 33080..33278 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-8Spodoptera frugiperda riceexonSFRU_RICE_003886 33719..33898 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-9Spodoptera frugiperda riceexonSFRU_RICE_003886 34506..34646 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-10Spodoptera frugiperda riceexonSFRU_RICE_003886 35356..35547 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-11Spodoptera frugiperda riceexonSFRU_RICE_003886 35832..36035 +
SFRICE012479-RA-exonSFRICE012479-RA-exon-12Spodoptera frugiperda riceexonSFRU_RICE_003886 36192..36787 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE012479-RA-five_prime_UTRSFRICE012479-RA-five_prime_UTR-13Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_003886 24695..24756 +
SFRICE012479-RA-five_prime_UTRSFRICE012479-RA-five_prime_UTR-14Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_003886 24939..24947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_003886 24948..25095 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_003886 26598..26804 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_003886 31305..31493 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_003886 31964..32107 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_003886 32596..32719 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-6Spodoptera frugiperda riceCDSSFRU_RICE_003886 33080..33278 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-7Spodoptera frugiperda riceCDSSFRU_RICE_003886 33719..33898 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-8Spodoptera frugiperda riceCDSSFRU_RICE_003886 34506..34646 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-9Spodoptera frugiperda riceCDSSFRU_RICE_003886 35356..35547 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-10Spodoptera frugiperda riceCDSSFRU_RICE_003886 35832..36035 +
SFRICE012479-RA-CDSSFRICE012479-RA-CDS-11Spodoptera frugiperda riceCDSSFRU_RICE_003886 36192..36326 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE012479-RA-three_prime_UTRSFRICE012479-RA-three_prime_UTR-26Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_003886 36327..36787 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE012479-RA ID=SFRICE012479-RA|Name=SFRICE012479-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2395bp|location=Sequence derived from alignment at SFRU_RICE_003886:24695..36787+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
CTTTTTATTTCAGCACGTGTAGACGCTGACGACTTGCTTATCATCCCATA
AAACTAATTTAGGTAACCAAAATGCCGTCTGACGCAAAGAAAAGGGCTCA
ACAGAAGAAGAAGGAACAGGCGAGCAACAGGAACAAGAAACCCGTGGCTA
GAGTGACAAATGAGGAGAATGGTTCTGCTACTAACGGCAACAAGGAAGAG
CGAGAGCTCACCGCAGAAGAGGCACTATGTCTTAAACTTGAAGAGGAGGC
TAAGATGAACTCTGAAGCCCGATCATGTACTGGTTCGCTTGCTGTACACC
CGAGGTCGAGAGACATCAAGATAGCTAACTTCTCCATCACCTTCTATGGA
AGTGAACTACTGCAAGACACTCTTCTGGAGTTGAATTGTGGACGACGATA
TGGCCTCGTGGGATTGAATGGATGTGGCAAGTCGTCGTTGCTGGCCGTGC
TAGGTCGGCGCGAGGTGACTATACCCGCGCATATTGACATTTTCCATCTG
ACGAGGGAGATGCCCGCCTCCGATAAGTCTGCACTTCAATGTGTCATGGA
AGTCGACGAGGAGAGGATCCAGCTGGAGAAGCTCGCCGAAGAGTTGGCGC
AGTGCGAGGATGATGACGCTCAGGAACAGTTAATGGACGTGTATGATCGA
CTGGAAGACCTGAGCGCCGACACGGCAGAAGCGCGCGCAGCTAACATTCT
ACACGGTCTTGGCTTCACCAAGGAAATGCAACAGAAGGCAACAAAGGACT
TCTCAGGAGGTTGGCGTATGCGTATCGCGCTGGCACGTGCGCTGTACGTG
AAGCCTCATCTTCTGTTGCTGGACGAGCCCACCAACCATCTGGATCTCGA
CGCCTGCGTGTGGCTTGAGGAAGAACTCAAACATTACAAACGTATCCTCG
TGCTGATATCTCACTCGCAGGACTTCTTGAACGGCGTGTGCACTAACATC
ATTCATATGAGCAAGCGCCGGCTCAAGTACTATACGGGCAATTACGAAGC
CTTCGTCAGGACTCGCATGGAACTGCTGGAGAATCAGATGAAGCAGTACA
ACTGGGAGCAGGACCAGATCGCTCATATGAAGAACTATATTGCGCGGTTC
GGTCACGGTTCCGCCAAGCTGGCCAGACAAGCTCAGTCCAAGGAGAAGAC
ACTGGCTAAGATGGTGGCCCAGGGATTGACGGAGAAAGTTATCGATGACA
AGATCCTTAACTTCTACTTCCCATCGTGCGGGAAGGTGCCGCCCCCTGTT
ATTATGGTGCAGAATGTGTCATTCCGGTATACTGACTCGGGCCCATGGAT
TTACAAGAACTTGGAGTTCGGTATCGACCTCGATACACGTCTCGCACTTG
TAGGACCCAATGGAGCTGGCAAGTCCACGCTCCTTAAATTGTTATACGGA
GATCTCGTCCCGTCCACTGGTATGATCCGTAAGAACTCTCACTTGCGTAT
CGGTCGTTACCACCAGCACTTGCACGAGCTGCTGGACTTAGACCTGTCAC
CGCTCGACTACATGATGAAGGAGTTCCCTGAAGTCCGAGAGCGGGAAGAA
ATGCGCAAGATCATCGGACGATACGGACTCACCGGACGACAACAGGTGTG
TCCGATGCGTCAATTGTCTGACGGGCAGCGGTGCCGCGTTGTGTTCGCTT
GGCTTGCGTGGCAGACACCGCACCTCCTCCTCCTTGACGAACCTACCAAT
CATTTGGACATGGAGACTATCGATGCGCTAGCGGACGCTATCAACGATTT
CGACGGCGGAATGGTACTCGTGAGCCACGACTTCAGGCTTATCAACCAGG
TCGCGGAGGAAATCTGGATATGTGAGAACGGAACCGTCACAAAATGGCAA
GGCGGCATTCTCAAATACAAGGACCATCTCAAATCCAAGATCATGAAGGA
GAATGCAGAGAATGCGAGCAATGCTCGTAAATAGTCCAATATCTAGCTGT
AACCCTTAGATTATGTTCGTGCGTCGCGCGGCGCTCCCTCTCCACCTGCG
ACTGATATACTGGCTACTCATGACATTCTTGTGTAACATCAACCATGTGA
AAGCCAGTGCAATATCATAACAAAGCAATTTCCCTGTTAATGCTAAGATC
ACCCGGCCGGTCCGACACTGGTGCAGTCAGCTCTCTGATCAACATCTTAT
TATTGTGGACACTGTTTGTATGCAATTATATCTTAACTCGTGAAACTAAG
CTGTGTTAAGGGAGATGCTTCAAGGTAGTTCGCAAAATATACGTTTTCTT
AAGTTTTTGCAATTTACAGCTCGATATATATTTTTTTTTTTTTGATGAGA
CGTTGCCCCACATTAGGATTGTCTCCTGTGTCGTGGGTGCGTTTACAAAC
ATACAAGTTCACATACACGTGACACCCAGACCCGGAACAATAATC
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protein sequence of SFRICE012479-RA

>SFRICE012479-PA ID=SFRICE012479-PA|Name=SFRICE012479-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=621bp
MPSDAKKRAQQKKKEQASNRNKKPVARVTNEENGSATNGNKEERELTAEE
ALCLKLEEEAKMNSEARSCTGSLAVHPRSRDIKIANFSITFYGSELLQDT
LLELNCGRRYGLVGLNGCGKSSLLAVLGRREVTIPAHIDIFHLTREMPAS
DKSALQCVMEVDEERIQLEKLAEELAQCEDDDAQEQLMDVYDRLEDLSAD
TAEARAANILHGLGFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL
DEPTNHLDLDACVWLEEELKHYKRILVLISHSQDFLNGVCTNIIHMSKRR
LKYYTGNYEAFVRTRMELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKL
ARQAQSKEKTLAKMVAQGLTEKVIDDKILNFYFPSCGKVPPPVIMVQNVS
FRYTDSGPWIYKNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPSTG
MIRKNSHLRIGRYHQHLHELLDLDLSPLDYMMKEFPEVREREEMRKIIGR
YGLTGRQQVCPMRQLSDGQRCRVVFAWLAWQTPHLLLLDEPTNHLDMETI
DALADAINDFDGGMVLVSHDFRLINQVAEEIWICENGTVTKWQGGILKYK
DHLKSKIMKENAENASNARK.
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mRNA from alignment at SFRU_RICE_003886:24695..36787+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE012479-RA ID=SFRICE012479-RA|Name=SFRICE012479-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=12093bp|location=Sequence derived from alignment at SFRU_RICE_003886:24695..36787+ (Spodoptera frugiperda rice)
CTTTTTATTTCAGCACGTGTAGACGCTGACGACTTGCTTATCATCCCATA
AAACTAATTTAGGTAATAATAAATTATTCCACTGTATCCACGTGAATAAA
GTGTAGTGATTGCTCTATAGAATATTCCTTTCGTGATACAGGATATCTTG
CGAGTTTCTATTTAATTACATTGATGAAATTTAAAGCACGTATTATAAGT
GGTATTTTTTGTGTTCGTGTTAATAAAAAAATGGCATTGCTCAGGTAACC
AAAATGCCGTCTGACGCAAAGAAAAGGGCTCAACAGAAGAAGAAGGAACA
GGCGAGCAACAGGAACAAGAAACCCGTGGCTAGAGTGACAAATGAGGAGA
ATGGTTCTGCTACTAACGGCAACAAGGAAGAGCGAGAGCTCACCGCAGAA
GGTAAATACCACGGTGAAATTTGATATTCACTCAATTACACCTTTGTTGT
AACTTACTTGCGAATTGGTATGTGTCTTTAAAGATTTTATGATATCAGAC
AGATCTTTTCTTGGGTATTCAGTGTCTCTATATTCATTACTCACGGACCG
ATATCGGTGAAGCACATGGCAATATTATAATATTTACGCTTAACATAATA
AATAATTATGAATTTAGTATTTGTATCTTCAAGTAATTTATGCATGGCGG
CTAGGCTTGCTGCAGTGCATCATGTTGTAGATTTGATTTTCATTTGAAAC
AGTTGTGAAAAAACAAACTATAGTTCAGTTATTTGCATCATGAACTTGTT
TTACAGATCTATTGTAGAAGGTAACATTCACATAAATATGGTCTCCGCTC
TCTAGGTGGGTATCCTCATGTGTCATGTCTAAGGAAGGGATATAAGTTTG
TAGAATTAACTGGGGATATACATTCATAGACTTAACTGAAATTATCATAT
AATTAAAATAAATATAACCAAACTAATCAACCAATGCTTACTAGTATTAT
ATTGTTGGATTGGTTCTTCTGATAGCCGATTTTATAGGTTAGTAGTTTAA
AGTTCAGACTTTAATGCAATTCTATAACTTAAAGTAAAAGAGTTATATAA
ATAAGGCATAGTTTATCGAAGTTGAGTGAATGGAAATCTAAGCATTTTAT
TTAGTGGGAGCTTGCATTTAAGTCCTGTAAGCAGCATCAAAGGGTAGGTT
TACCATTAGCCATCAGCTAGTAAAAAGTATATGCTACTGTATACCTATGT
ATGTACACTTTTATGCAAGAAGTAAAGCTTTGTCAATCAATCAGAAATAA
AAGGTTTGTCTATATTGTTCAACTGCAGCTATGTCATGGTCCAATAGTTT
TCTAGGTTTACTTACATAAGTACTATTGAAAAATCAACAAAAAGTTTAAG
AAAGTCATACTTTCACTAAGCTTAAATTGCAGTTGAGATGTTCTATAGTT
AGGAAGAAGAAAATTTTATTGATATTGACAAAATAACTCTCCTTGGTCAG
AATTGGTGCACATTTAAGTCACTAACATGATTTTTCTGACAAAACTTAAA
TGTTTTTTGGAACTCATTTACTTATTTTACTTTGTCATCAATTCTGCAAC
AAATATGAACGGCCCACTGTCATTTAAGCCTGCAAATCAATTTGTTGTAT
CCTTAATGTTATGTATTGTCATGTGCCATCAATTAAATAATTTGAAACTT
GAGCTATATACTATCAGTAGCATTAAAGGGAATGGTTTTGTGATCAGAGA
TGTGCCCAAAATATCTTATAATGTCCCATCAGTGTCACTTGTGGCAATAA
TACACCATCCCTGTCCTTAGCCATATAAAATGTTTATTTGATAATCTTAA
TAGGTCAGATTCCACAGAGCCTAATCAAAGATGATATTTTTGGATCTTTA
TAATCCTACATAATATCTAAATGGACCTGTTGTAAGTTTGTATCTTGTTG
CAGAGGCACTATGTCTTAAACTTGAAGAGGAGGCTAAGATGAACTCTGAA
GCCCGATCATGTACTGGTTCGCTTGCTGTACACCCGAGGTCGAGAGACAT
CAAGATAGCTAACTTCTCCATCACCTTCTATGGAAGTGAACTACTGCAAG
ACACTCTTCTGGAGTTGAATTGTGGACGACGATATGGCCTCGTGGGATTG
AATGGATGTGGTATGTAGAAATTTGGAATTTTAATGTAAATTTTTAAGTT
GCATGTCCTGTTATTATCATATTATTCATGATGCTAATATGTTAAGGAAG
TCATTAATTCTCTTTTAGCAAAGATGCTAGCGATTTTCGAATTTATACAT
AGTAAAGTGATTAAGTTGATCTGTTTGTAATGCAATCAAGCGACAATATT
CGATTTTGTTTTCTCAATCACCTTTTGAATAGAAAAAAGGCACATCACAC
CTTGTGTTCTATAATAATAATTTATGTTATACTTTTGTGGAAATAACTGA
CATGAGAGGGCAAAGTCTTACTCATTGACATAGGGCTGGCACTCACTGCC
GGCATGCTATAGTGTGGCATGTTATAAGTGGATTTCATCACTAATAAAGT
TATTTTGAATCTTATTTATGAGTTTAGAATTCATGTTACTTTATTTCGAT
ACCACAATGCCACGGTACCATGCCGTGGCGTGCAGTAACATGCTGTTTCA
TTCCACGGGCCACGGGTTTCTGCAGTTTGTGTCGAGAAATTATGATTGCA
AAGCTAAGATTGCTAAGCTAAGAAATAAGGATGTAACTTATGCAGCAATC
ATGGTAGAGTGGCTGGGTTTTGAGCAGAATACCACGGCACCTCTCGACGT
GCCATGCTGGCAGTGAGCGCTGGCTTTTACTCATTGGCTTACACAATAGT
CTAACTAAACCATAACATTCTCTTATTTCCTACAGAAACTTAAACGTGTC
TCAAACGATGACATCATTCATTTGTTATTGTAGGTACCATTGAAAACTTC
CGATTTACGCCTGAAATTATAATAACTATATTAATCTAAATAAAATTTCG
CTTAGTATTCGAGGTGTCGGAATATCGATGTTGTTTAGTTAGTACAATTT
GCCTAAAAAGCGTGTCAAAATTTAAAGTTGTTACGGTTACTGCAGTCTGC
AATCTAATTTTAACGTCATTTATCTGTCTGACCAATTTGATCGGCGATAC
CTTACACTTAAAACATGCTTTGTGTAACGGTATTTCATGATCGCACGACA
CGTCACATCGTTCTAATTTGAGCATTGTGTTTATTCCCATAAAAGTTTCA
TTTGCACGTTTGTGAGTTGTTTCTTATCGAATGTTGCGCGAATAAGTACT
ATAAATTGACTGTTGACAACCAAAAACTTATCTGACGAAAAAGTTAGCGG
ACAGTAACAAATACTTTTGCCGTTTAGTTGTTTCAGTAAGATCACTGGTC
CTATATTATTAAATTGGTCTTCCTATCGAATCCTTTCTTTTGCTCTTGTG
TTTAATCTAAAATTATAATTATTGCCATGTATAGTTATAGGTATACCACT
AATAATAAAAGTACTTTCCTACTATATAATTCAATTCTGTAACAAATATT
AAAAAATTAAGCCAAAAATTTAAAACTGCGGAATAGAATAATGTTTGTAA
CTATCGTTACAGCAGTGTGATAGTCTACGTGCATTTATTGATTAGTACGA
ACACCACTGACCCATTTTTGTGAAAGCGTTACGGTCGCGGTGCAACGGTG
CGCTCTGACAAATTAAAGTTGTATCGTACTATCAAACTTACTTACAATCA
CTTTTTAAAGTTGTAGAGAAAGAAAAAAATGACAGGATATTGGTTTATAT
GTGATCTAGGCAGTGCCACAAGCTCTGGAATAGGTAGTTGTTGCCATGCA
TGATTTCATTTTGGACAACATAATATATAGCAATGTTATTGTTATGTACG
CCTTTGTCAGGAGATATAAAATATCATTCAGAAAAACTCGAAATTAAAAG
TAAAGCCATGACAACGCCATCTATTCAGTAAATGACATACATACTTGGAT
GGGTTCTTAAGAATGGAAAATTTTATAAACTGCTTATCAACCTTGGTACT
ACCGTATTTGCTACACGTACACAAGTACGTATCGCAGATGGGTTAGAAAC
ATCTATGATTCATATTCACATATAGTATTTATTTACGTAAAATGAACGTT
TTCGAATACCTTGATGTAGCTTGGAAATCCATGTCACCAACGATGGTTCT
ACAATATGTAAAGGTACTTTATACTAATTGTTTCTTAATAAATTGCGTAA
ATTATGTTATCAGATAAATACTCGTTTATTATCGTATGCGATGAAAAATA
GACACATACTGCGTTACTTCCTAAAAATGTGCGAGAACATGCTAAATGGT
ATATTCTTCTTTCTATGGTAAGAAGATATTTCTTTCTTAGGCTATTATTA
GTCTATTTCATTCATGACGATATAAATCGTTTGCTCTTTATTATACTATA
TTAAATAAATGTGGGAATAGGGCTGCAAAACGTTCTAAAACGTTCCCATA
CCTACATAAATGAAGTTATATAAAGGCCGGGCTGCCATGGGAACTGAAAC
GTTGGTTGCAACTTAGAAAGTTTATTACTAAATATAGAGAGGCAGCTCTA
CCGAGGCTTGGCTAGTTTTTATATGATGTTTTCGGTATGTCATTTTGAAT
TAGCCAATTCGATTCGATTGTAGTAATATTATTTCTACATTTTAGTTGCA
AAAGCAGGTAAATGATGTTAAGTTACAGAATATAGCGTAGTTAACGTTAC
ACTTAGATTTAAGTTTGATCATTCGTTACTTGAAGTTAGGTCGACACAGG
TGCTATGGTTATAGCGTAGATATCTATTGCTGTATTGCACTGCCCTTGCA
TCCAACAACCTAGGTACACAGGTATACTGTTGGTTTTATCAACATGGATA
AATTCCCTTGATTCATGCATGGCTTCTGGAGCGTTGCCAGGTTTTGTTGT
AACTGCCCAACATAATTGAATATACATACCTCACGATAATTAGTTATAAC
AAAAACTTATACATAGACTTAATTAGATTTTTAGGTACTGTCTAATTTGC
TGTCTAATCCAGAACTTACTGAGTATTCACAACAGCGATAACTGTCGTAT
CGATCTTGACACAATGATAATAGTCAGTGTGATATTTTTGCTGAGTTTTC
TCGTTAGTCCCATGGGTACTACCTAGTCAATTTGTGGAAAAATCTGATCT
ATTATTATTATTCACGTCTTGTAAAGAAATCTTGTTGAACAATTGCACTT
AAAAAGAAATCAACAACAGGGGTAAGGTATCGACAAGAAGTATGTTTACA
CAGAAACCTCGATTAAATATTGAATACAGTGACGCATTACCCTTAGACTT
TGCAATCGATTGTCGATACAGAACAACGACATGTAGGCGGTCCGTAACTA
AAAAAAGTTTGTCGTATCAAATAATTTGAAATAATTTTACTTCCCATACT
TTAATTTCTCAACCACGATAGTTTGGGCTCGCGTTTTTGTACTAGTTTAC
GATTTGGTTCAGAGTATGTGAGTGCAAGCAGCCAAAGCCTCTGTTTTCCA
AGTCAACAGCTCGACATTTACATGTTCCTGAATGTTTGTCAATGCGTTAC
CGACTGCGAGTGTCGCTGCACCTTCGAATTTATACTTGTTAAGTAGACAA
AAATCACTGTACAACTTGATACTTATCATTGAAAATTCAATGTAAGATTG
AAATCGTTTGAGATATCAACCAACCCTTTTATTATTTTCATTAACATATT
TTTTAATATGTACTACTTTCTGCCAGCGGGTTCGCCCGCGTTCCACACAC
CATAAGATATGTCTGTTCAACTTCAACCGTTTTGACGTGATAGAATTCGC
AAATTTTCGCATTTATAATATCAGTAGGTTATAAGGCAATTTTTAACAGT
ATATTAATATGCTTTTTTGCCGTTTCTAAGTACCTGATGTTGTCTTATAA
AATAAGTTATTGGATTTAGATCAAATATTTGAATGTTAAATGATGCTGCG
CTATCTAATTAAGGGCGAATCATTTACATTGCACTTATTGCGAATTATTA
TGTTTTCTTGGGAATAGTCTTCCTATGCTATTTTTATTCTTAAGTACGTA
CACTAGCTTGCAAATATCGTTTATAGACACATATGCTAAAATTCAAATTA
GAATTAGTCAGTATAAGTATTCGTTTTTGTCGAGATTTACACAACGCTGC
GTTGCATTTTTGGTTCCATGATAATTTAAAAACAAAAAATATGTCGACGT
ATTGAGATCCTCTTTTAAGTCTTTAGTCTACTGACTTATAACAAAATAGG
CGAATTTTGTTTATTCTTGATAGCGAATATACTGTATGCTCAGTATGCTG
TATCGAAAGAGGCGACCTGCGAAGTATTGGTCCTATACTCTTTACAGCTC
TTTATTTTGGTATTTGAATAGTAAAGAAAAAATTTGTTCGCATGATTGGT
GAAACATTATAATAAAATAAATTAAAAACTTGTGTCATGTAATGTCAACT
CTACTTTGGTCTCGTTCTACAGGCCGTAGCGTGTTAGCTAGATTCTATCC
ATAACTGTACTGATACTTTCGTACTGATTCTCCTTCATTCATGAATTACA
GGCGTCATAAACTCTGATATGTTTTTTTTATGTCTAACGTAAAGTTTTGA
TAATTTCCAGGCAAGTCGTCGTTGCTGGCCGTGCTAGGTCGGCGCGAGGT
GACTATACCCGCGCATATTGACATTTTCCATCTGACGAGGGAGATGCCCG
CCTCCGATAAGTCTGCACTTCAATGTGTCATGGAAGTCGACGAGGAGAGG
ATCCAGCTGGAGAAGCTCGCCGAAGAGTTGGCGCAGTGCGAGGATGATGG
TAAGAATTATTGCTATAATGTCTTGACTGCAGGGTTGGCGCGGTGACTGA
GCAACTGGCCGTGTAACGTGTAGCGGGTTCGATCCCCGCACGGAGCAACT
CTTTGTGTGATCCACAAATTATTGTTCCGGGTCTGGGTGGCATGTGCCTG
TGAACTTGTATGTTTGTAAACGCACCTACGACACAGGAGAAAGAGAAATC
TCAGTGTGGGGCAACATTAAAAAAAAAATATTTTATAAAATATAGTGATT
CTGTACAATATTAAACGTTTTGATATGAACAAGGTAATCACAGTTTAGTA
AAAAAAAATATATATACCAGTATCCTATACGTCATACAACAGGATCCTAT
ACATGTGATACCATTCATACGCGTGGATGGTATTTTAAATATTTATTCTG
TAAAATTTAATATTCAATTAAACTATAATTAAAGTACCTATTATATTTAC
ACAATGTGTTCGTTTCTAGACGCTCAGGAACAGTTAATGGACGTGTATGA
TCGACTGGAAGACCTGAGCGCCGACACGGCAGAAGCGCGCGCAGCTAACA
TTCTACACGGTCTTGGCTTCACCAAGGAAATGCAACAGAAGGCAACAAAG
GACTTCTCAGGAGGTTAGTATTCATTATTATCATCATCGTCATCCTCATT
AGCTCGTGAGAATCCACTGTTGAACTATGAGCCTTCTCTACTGAAGATAC
GGGCCACCAACGCCAACTCTGTTAAATATGTAGTTCTGTAGTTAAGAGGA
AAAGAAGAGTAAGGGTGTGACAAATGTATTCTTCTCAGAGGGCTTAGTAC
GAGTTTGTTTTACGTTGAACGAGGCCGCGTTCGAAGCTCTTATTGGTTTG
TTCATTCGCCACGTTTAGAAGTTAGTATTGCTACAACAAACGGGCCTACG
GAGCATAACAGCAGTTTTTTACAAAGAGTACTCTATACTATCGATTACAC
TTGTTTGAAGTTCTTACGAATATTTCCTCGGTTACAATCCCAAATAATAA
TAAATACGAAAGTAAGTTTCTGAAATGCTGGTATATATGCGTTAAAGTCA
GATAAGCTATATTTTGGAGACGTTGATTCCTAACCTGACATTTGCTCAAA
GGTTGGCGTATGCGTATCGCGCTGGCACGTGCGCTGTACGTGAAGCCTCA
TCTTCTGTTGCTGGACGAGCCCACCAACCATCTGGATCTCGACGCCTGCG
TGTGGCTTGAGGAAGAACTCAAACAGTAAGGATTGTTCATAAAAATATTC
TTCTTTTTTAAAAAACCGGGGTACAACTTCATACCGTGACAGACACAACT
TGCCAACTTCATACCTTCGTGTGGGGCTGGTAAGAGACAAATATGGCGCT
CTATGTTATTAAGTCACGTTACAACTTCTTTTTCGTCAAATATCATACTC
ATTTCTCTTAGAATAGATAGATAATGCGAATATAGCTATTTTCATATAAT
TTTATTAGTGAAAACAATTTAATTTTTATTTTCTCATCATTCCTATTAGA
AATCGAATCACGACCTATTTTAATGATCAATCGTTAAGGTAATAATATTT
GAACTAATATTGATAATAATATGTTTTAATTCCAGTTACAAACGTATCCT
CGTGCTGATATCTCACTCGCAGGACTTCTTGAACGGCGTGTGCACTAACA
TCATTCATATGAGCAAGCGCCGGCTCAAGTACTATACGGGCAATTACGAA
GCCTTCGTCAGGACTCGCATGGAACTGCTGGAGAATCAGATGAAGCAGTA
CAACTGGGAGCAGGACCAGATCGCTCATATGAAGGTCGGTAACAGGATAT
ATATCTGTGCTTCATATAGCAGCTTGCTTGCTTACTACTGAAACCAAAAT
TTCTATACTTTGTACCAAACTTCCTCCAAACACGTCTAGTAGCTCTTTTC
TTGGAAGAGAAACAAACATACATATATCTTCACCATCTATCAATGTGGTT
CTTTCTAACTAGTCAAATTCAACACTTAATTGCACTATAGTTTACATGTG
GCACCAGAATACTAGTCTTCCAGAATACTAGTCGTGTTTACTAACCTCTT
ACTTGTACTGATAGGTGTCACTTATAGATCGGTAAAAACGAAACAGACGC
TATATGTGGCATATCTTATCTTAGCCTTTCCTAAATTTACTTGAAATTGG
TGAAAATAGGCATTGCTGTTCTAACAATAAGGCAATATTTATTACATGAA
TAATTAATCGTAGTATTTTTACAGAACTATATTGCGCGGTTCGGTCACGG
TTCCGCCAAGCTGGCCAGACAAGCTCAGTCCAAGGAGAAGACACTGGCTA
AGATGGTGGCCCAGGGATTGACGGAGAAAGTTATCGATGACAAGATCCTT
AACTTCTACTTCCCATCGTGCGGGAAGGTGCCGCCCCCTGTTATTATGGT
GCAGGTTAGTATTTTACATGTAACCTCTCAATATTTATTAAGACGAATAT
ATCTAATTTCTTTCATAATCTGTATAACAGTTAATTATAATATGGTTTTA
TTAAACCTGCCGACGTTCAGAAATAGCACAGCAGACACTCCGTAACAATA
AGGTGATCCCTTATGTGAAGTAACTGACGACAAGTGGCTGCTATATTTAT
TTTAATTTGTGCCAAAAATAAGACTAGGCTGAAGTACTAATTTTTTTTTT
ATTTATATGATAAGTGCTCGTAGTTGGTTTTGTGGCATTTTGTGCAATTA
TACTTTATTCATTGACAATTGGGTACTTTCCTAGGTCAAAAATAAATTAT
TTTGATATTTCATTATAATAAAATATCCCAAAATAATCGTATTTTCATTC
ATTCATTTGACGATATACTTATTTATTAAATTTTTCTTGCTATTTTTTGC
GTAATAATTTGCAATGTCATACAAAATTCATAGAAAAGTAACGTTTTTGA
CATTTCGATAAAAGTATTGAATTTGACTAGTAGACTAGTACCCTATTGAC
AAAAAGGCGTTCTCGAGTGTGTAGATGCTTTGATGACTGATGTTAAATTA
TGTGTTTTCAGAATGTGTCATTCCGGTATACTGACTCGGGCCCATGGATT
TACAAGAACTTGGAGTTCGGTATCGACCTCGATACACGTCTCGCACTTGT
AGGACCCAATGGAGCTGGCAAGTCCACGCTCCTTAAATTGTTATACGGAG
ATGTAAGTATCTTTCTTGTCTTATGTTATGGATAGCGTTGCCTGGAGTCC
GGATAAAGGCGGACATGGTCAGGCTTTTTGATTGCGTGTTCAGCCAAAAT
AAATAGTATTCGGATGGTGTCCGGCTTTTATTGTGTTATGGTAAACATAA
AAACACTTAGTTTTTACATTCCTTTTTCTGTCCTATTAATAATAGGTCGC
GAAATCCTCAATCTTGTAGCGTGTCCGGCCTTTTTACTCACATGTCTGGC
CAAGCTGGCTGGCCTCTCCGGCTTTTAGGTTTGGCGACCTGGCAACCCTA
GTTATGGACAAGAATTTTAAGGATATACATACTCAAGGCATTTTTGCAAA
GTTGTGAAGGGATTCAATTATTAAAATCGAAATTTGTTGCATGTTATATA
AAATTTTTATCATTGATAGTCTGTGAAACTGTATTATGTATTTGCGTCCA
CGAATTGGTTAGCACATTTTAATATATATAATCTTTATAAATCTTTCTAT
ATAATCTTACAAAGTACATAAAACTCGGAAAAAGTTGTTGTTAGATTTCG
AACCTGCATTCTCATATAGATCAATGCCTTTATATACCTGCCTCCCGAAA
ATTAACGTGTGTTTTATTTACTATTACTTTACATTAGTCACAGTAATATT
TATAATATTCAGTAGCAACAATGTTCTCTGTTACTAAAATAAAATGTTAC
TTTGATTACAGCTCGTCCCGTCCACTGGTATGATCCGTAAGAACTCTCAC
TTGCGTATCGGTCGTTACCACCAGCACTTGCACGAGCTGCTGGACTTAGA
CCTGTCACCGCTCGACTACATGATGAAGGAGTTCCCTGAAGTCCGAGAGC
GGGAAGAAATGCGCAAGATCATCGGACGATACGGACTCACCGGACGACAA
CAGGTAACTTGATCACTCCGTTACGATTATCTGCGAGCTAGATTCTGTCC
ACGAATTCGTACAAGTATACATAGTAACTTTATGTATTTTATTTTGTTCA
GTTTCGTAGCCATATTTTGCTACGAATGGACTGGCTCGACTGGACTGTTA
TACGATTTTCTTTTATATATATTATTATATAGATTTACTAAGATATTTTC
TTACAAGTATTACAATTTCGTAATGTGTTGGAAAAACTAAAAAAATAATA
AATTAAAGGTAATTTACTAAAATTTTGTGTTTTACAGGTGTGTCCGATGC
GTCAATTGTCTGACGGGCAGCGGTGCCGCGTTGTGTTCGCTTGGCTTGCG
TGGCAGACACCGCACCTCCTCCTCCTTGACGAACCTACCAATCATTTGGA
CATGGAGACTATCGATGCGCTAGCGGACGCTATCAACGATTTCGACGGCG
GAATGGTACTCGTGAGCCACGACTTCAGGCTTATCAACCAGGTATAAACA
AGAATAAATTTCTATTACCCAAAACAATCCTCATTTAGAGTTGCGTGTGT
CTATAGGCGACATCGAGCATGGACATTATCATAACTATTTGAAATGATCG
CATTAATCCATTCATTAGACTCAACTTTTCTTGATTTTCATTTACAGGTC
GCGGAGGAAATCTGGATATGTGAGAACGGAACCGTCACAAAATGGCAAGG
CGGCATTCTCAAATACAAGGACCATCTCAAATCCAAGATCATGAAGGAGA
ATGCAGAGAATGCGAGCAATGCTCGTAAATAGTCCAATATCTAGCTGTAA
CCCTTAGATTATGTTCGTGCGTCGCGCGGCGCTCCCTCTCCACCTGCGAC
TGATATACTGGCTACTCATGACATTCTTGTGTAACATCAACCATGTGAAA
GCCAGTGCAATATCATAACAAAGCAATTTCCCTGTTAATGCTAAGATCAC
CCGGCCGGTCCGACACTGGTGCAGTCAGCTCTCTGATCAACATCTTATTA
TTGTGGACACTGTTTGTATGCAATTATATCTTAACTCGTGAAACTAAGCT
GTGTTAAGGGAGATGCTTCAAGGTAGTTCGCAAAATATACGTTTTCTTAA
GTTTTTGCAATTTACAGCTCGATATATATTTTTTTTTTTTTGATGAGACG
TTGCCCCACATTAGGATTGTCTCCTGTGTCGTGGGTGCGTTTACAAACAT
ACAAGTTCACATACACGTGACACCCAGACCCGGAACAATAATC
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Coding sequence (CDS) from alignment at SFRU_RICE_003886:24695..36787+

>SFRICE012479-RA ID=SFRICE012479-RA|Name=SFRICE012479-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1863bp|location=Sequence derived from alignment at SFRU_RICE_003886:24695..36787+ (Spodoptera frugiperda rice)
ATGCCGTCTGACGCAAAGAAAAGGGCTCAACAGAAGAAGAAGGAACAGGC
GAGCAACAGGAACAAGAAACCCGTGGCTAGAGTGACAAATGAGGAGAATG
GTTCTGCTACTAACGGCAACAAGGAAGAGCGAGAGCTCACCGCAGAAGAG
GCACTATGTCTTAAACTTGAAGAGGAGGCTAAGATGAACTCTGAAGCCCG
ATCATGTACTGGTTCGCTTGCTGTACACCCGAGGTCGAGAGACATCAAGA
TAGCTAACTTCTCCATCACCTTCTATGGAAGTGAACTACTGCAAGACACT
CTTCTGGAGTTGAATTGTGGACGACGATATGGCCTCGTGGGATTGAATGG
ATGTGGCAAGTCGTCGTTGCTGGCCGTGCTAGGTCGGCGCGAGGTGACTA
TACCCGCGCATATTGACATTTTCCATCTGACGAGGGAGATGCCCGCCTCC
GATAAGTCTGCACTTCAATGTGTCATGGAAGTCGACGAGGAGAGGATCCA
GCTGGAGAAGCTCGCCGAAGAGTTGGCGCAGTGCGAGGATGATGACGCTC
AGGAACAGTTAATGGACGTGTATGATCGACTGGAAGACCTGAGCGCCGAC
ACGGCAGAAGCGCGCGCAGCTAACATTCTACACGGTCTTGGCTTCACCAA
GGAAATGCAACAGAAGGCAACAAAGGACTTCTCAGGAGGTTGGCGTATGC
GTATCGCGCTGGCACGTGCGCTGTACGTGAAGCCTCATCTTCTGTTGCTG
GACGAGCCCACCAACCATCTGGATCTCGACGCCTGCGTGTGGCTTGAGGA
AGAACTCAAACATTACAAACGTATCCTCGTGCTGATATCTCACTCGCAGG
ACTTCTTGAACGGCGTGTGCACTAACATCATTCATATGAGCAAGCGCCGG
CTCAAGTACTATACGGGCAATTACGAAGCCTTCGTCAGGACTCGCATGGA
ACTGCTGGAGAATCAGATGAAGCAGTACAACTGGGAGCAGGACCAGATCG
CTCATATGAAGAACTATATTGCGCGGTTCGGTCACGGTTCCGCCAAGCTG
GCCAGACAAGCTCAGTCCAAGGAGAAGACACTGGCTAAGATGGTGGCCCA
GGGATTGACGGAGAAAGTTATCGATGACAAGATCCTTAACTTCTACTTCC
CATCGTGCGGGAAGGTGCCGCCCCCTGTTATTATGGTGCAGAATGTGTCA
TTCCGGTATACTGACTCGGGCCCATGGATTTACAAGAACTTGGAGTTCGG
TATCGACCTCGATACACGTCTCGCACTTGTAGGACCCAATGGAGCTGGCA
AGTCCACGCTCCTTAAATTGTTATACGGAGATCTCGTCCCGTCCACTGGT
ATGATCCGTAAGAACTCTCACTTGCGTATCGGTCGTTACCACCAGCACTT
GCACGAGCTGCTGGACTTAGACCTGTCACCGCTCGACTACATGATGAAGG
AGTTCCCTGAAGTCCGAGAGCGGGAAGAAATGCGCAAGATCATCGGACGA
TACGGACTCACCGGACGACAACAGGTGTGTCCGATGCGTCAATTGTCTGA
CGGGCAGCGGTGCCGCGTTGTGTTCGCTTGGCTTGCGTGGCAGACACCGC
ACCTCCTCCTCCTTGACGAACCTACCAATCATTTGGACATGGAGACTATC
GATGCGCTAGCGGACGCTATCAACGATTTCGACGGCGGAATGGTACTCGT
GAGCCACGACTTCAGGCTTATCAACCAGGTCGCGGAGGAAATCTGGATAT
GTGAGAACGGAACCGTCACAAAATGGCAAGGCGGCATTCTCAAATACAAG
GACCATCTCAAATCCAAGATCATGAAGGAGAATGCAGAGAATGCGAGCAA
TGCTCGTAAATAG
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Synonyms
The feature 'SFRICE012479-RA' has the following synonyms
Synonym
SFRICE012479-PA
SFRICE012479
maker-SFRU_RICE_003886-augustus-gene-0.17-mRNA-1