GSSPFG00001269001-RA (mRNA) Spodoptera frugiperda corn

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGSSPFG00001269001-RA
Unique NameGSSPFG00001269001-RA
TypemRNA
OrganismSpodoptera frugiperda corn (Fall armyworm - corn variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14312contigscaffold_14312:2260..6517 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda corn annotation OGS2.22015-12-04
Properties
Property NameValue
Full nameGSSPFG00001269001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
GSSPFG00001269001GSSPFG00001269001Spodoptera frugiperda corngenescaffold_14312 2260..6517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00001269001-RAGSSPFG00001269001-PASpodoptera frugiperda cornpolypeptidescaffold_14312 2260..6517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00001269001-RA-CDSGSSPFG00001269001-RA-CDS-3Spodoptera frugiperda cornCDSscaffold_14312 2260..2439 -
GSSPFG00001269001-RA-CDSGSSPFG00001269001-RA-CDS-2Spodoptera frugiperda cornCDSscaffold_14312 5313..5381 -
GSSPFG00001269001-RA-CDSGSSPFG00001269001-RA-CDS-1Spodoptera frugiperda cornCDSscaffold_14312 6107..6517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
GSSPFG00001269001-RA-exonGSSPFG00001269001-RA-exon-3Spodoptera frugiperda cornexonscaffold_14312 2260..2439 -
GSSPFG00001269001-RA-exonGSSPFG00001269001-RA-exon-2Spodoptera frugiperda cornexonscaffold_14312 5313..5381 -
GSSPFG00001269001-RA-exonGSSPFG00001269001-RA-exon-1Spodoptera frugiperda cornexonscaffold_14312 6107..6517 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=660bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)|Notes=Excludes all bases but those of type(s): exon.  
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGGACACGATACTACAGCAATGGCGCTCGTTTTTGGACTA
ATGTTGCTAGCAGACCATCCAGAAGTACAGGAACGTATTTACGAAGAGTG
TCAGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGG
CTGAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTAC
CCGAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGG
TAAGCACTAA
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protein sequence of GSSPFG00001269001-RA

>GSSPFG00001269001-PA ID=GSSPFG00001269001-PA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=polypeptide|length=220bp
YLLQKYVTYHYFPETAMGTQLDSDSSTKTQEYKTAILQIGGLLMGRLTRV
WLHNEYIFRKFPIGKQFEKCLEKVHSFADNVIMERKKNWTPGQSDVVEDE
VGGKKRLAMLDVLLEAERKGEIDLEGIREEVNTFMFEGHDTTAMALVFGL
MLLADHPEVQERIYEECQTILGDSDTTPTMSDLAEMKYLEAVIKETLRLY
PSVPFIAREVTEDFMLGKH.
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mRNA from alignment at scaffold_14312:2260..6517-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=mRNA|length=4258bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGTGAGTTTCTAATTATTATGTTAAGGATGAAAAAAACCG
TCTTGGACCTTTAGAAAAGTTTAAAATCTGACTTCTGTGTTCTTTCAATA
GTAAAATCATATCCAAATAGCGTGCCTTTTATTCCCGAAGGGGTAGGTAG
AGGTGTAAATTCTGGCACGTAATGCCACTGTATACCCACTTTGCACTATT
TATGTTATAAGTCCTATGTAATGGGGGGTGAGGCTATTGCCATATACCGG
GCACATTTCCGGAGTCCGTGACTACAGAGAAATTAAAAAAAAGAAAAATA
ACAAAGTAACACTTTGCTCGGCAGTAGCATTTGCGACCCCTCGGCCAACA
GAGTAACTAACCTTGACAAATTGCGTAACTTAATAAAGCTTAAAGCAGAC
TCGCTCAGACTTCTTTCAGGCTATTTGCAAATAAAATACTGTCTCATTTG
ATTTCACAATTCCTGGTATTCGGATATTTGGCAAAATAAACATCTAGTAT
GTAAATCACGTTTATCATGACATGGACTTTCATTGCGTCAAGTAAAGTAA
TTCAGCGAACTCATTAGACACGGTAATTAATATTTTTACGAAAAAAATCT
TCCAATTTTTGTTAATGGCGGTTGAAACTATGTTGAAAATACTTAGAAAA
TCAGGGTTTAGTGAAAATGTTTTGGCTTAGAGACAAAAGAGGGGATTTTC
GAGATTATTCCTTTGTTAATAAGGTTGTTTTTTCAGGGACACGATACTAC
AGCAATGGCGCTCGTTTTTGGACTAATGTTGCTAGCAGACCATCCAGAAG
TACAGGTAATTTAAAATTACTTTTTACCTGACTTTCGGAAGGTGTGTGGT
GTGTTTATTTTCTTATTTATATAATTGTGTGTCGGCGTTATAAGCTATAC
CAAAATTTTTTTTTTCGAGGTTCTAATCAGAGTCTGTAGCTAAATGCCAC
TTAAGCGCTTGTTTACCCAAAGAGCCAACAAGGGCTGATGTCGGAGCTGC
GGAATGCCTAGCGCCGCCCTCGGGCTCGAAAACTAAGTTTTTCCAAAAGA
AATCTTTTTCAAAAACAAAAATCGTTTGTCTTGTCAAAATTTACGTCAAT
CCCATTATATTTTTTTACACTCTTTGTAGACAAGCGCTAAATGGCATCTG
GATAGAGGCTGAGGAATCCTTTATCACAATCCAGTACTTAAATATTCTGA
CGTAGGCACAGGAAATTAGAATTGATAGCTGGCTGGATTTGTATCCCTAA
GCGAAGGGTATCGTGTGGTACACAGTTTATCTTAATTAATCGCTAGTTAA
TCCCATGTGACGTATCTCCTAGTGGTAGTATCTCGACATGTTTTTGTGAT
AAAGGTTATTAATGATCGAGGTTTTCTATACAATTAGTGCTAGTGTAAGT
GATTTGGGACTCATGCCTAATCCAGATCTGCGGACTACCTAACGGGTTTA
CCGGGGATCCGGCTTGAAGGTCAGAAGTAGGAACGGGGTGGTTTTTAGTT
AGTAAGAGTATGACACTCAATTCGTCTCGCCCAAGGCGAGAGAACTCGAT
TGCATAATTTTCCCGCCTTAAAAAAAAAGTTTCAGTGATTCGGTTCACTT
TTTGATTTACATTGGTAGTAGTATTAGGATTAAACATCTGTCCGTCTATA
GATCTTTTGTTAAGGAGACCATAGTCATAATTTTCTCGCGTTCTAGATGA
GATAAGGAGTGTAAATTTTTTATCTGACTTACATTGTTCCGGTCGACATC
TGTCTATAGATCTGACGTGATAGGTGGACGTGGTGTCCTAGATTTTCTAA
CGAAATGTCGTATGTATTTGAAATTCTTAGTATTGCGCTTTATATTATGA
AACTAATAACATAAAGAGTAACGCGTTGCTGTCAATCCTTTCGTGGAATC
AGAGTAATATATTTACAAAATATTTTCATCTTTCTGGCGACACATGACAA
ATTACAAATGACAGAAGTCGCACATAGACGATCGACGAACAAATTAAAGG
AGACGTCATGAATCCAACATCGCACATGTGAAGTTTACATGCGAATAAAC
ATGGATATAAATTCCCAACGAACAACAGTTGGGCAGAAAGCCCGCCAGGC
ACTATCACCTCGCCTAGTCGGAGGATCCTCCTTTTCCGATTTTATGGAAC
TTAACGCTCTGATCCCTAAATCCTTTATATATCTGTATAGTGGCTGAGAG
TCTCCCCATATGACGTTATACGCGTTTCCTATTACATGATATAATTACAA
GGCTAGCGGAATGGATGTAGTTAACGCGTCTGAATGGCCTTTCACAGAAA
CCGGCTTCAGATTCACTTTAATTAAAATTATTTAACGTTTTCACGACTCT
TGATGATTAACAAGGATCGTATCGAATCGATAGTGCATCTTCAACATCAT
CATTTGCTGTGAGTGGCATTTTTTCGAAAGAGGGTTTGGGTTTTAACTTG
TAATTTCTTTGTCCTGCCTTTTTTTGCTAATAATCTTCTATGAAATAAAA
ATAAGTTGGATTTTCCTTCCTGATGCTCTAACTCCAGAACGCACGAACCG
ATTTCCATGGTTTTGCATTCGTTGGAAAGGTTTCGAGCTCCGTGAGGTTT
ATATCAAAGAAAATTCAAATAATTCAGAAGCCTAAATTCTGCCACAAGTC
ATTATTGTACGTGGACGAAGTCGCGGGTACTGCTAGTAATTATTACAATT
CAAAATTATGTTGTCACAGACATAATCATGAAATTATTAAGAAAATCCTG
GCTTTGGTTTTTGATTCGCGGAAGTATATTTCGGTTTGGCCTTGAAATTA
CCCGTAAAAGAATTGAGTGCTTTCCATTATGTCATTCTAAAATAACAAGA
TAAAAAAGGCATGGCAATATATATTATGGTGTATGATCATTTAATTTTTA
CACATTCATATCTCAGAGAAAAATAAATTACATTTTACTGTATTAACCTC
CCACGGAAAAAAATAAAGTACTCGATTTGTTAGAATGTTTTACCATAATA
AACAACTTATTCATATTTTATTTCGCCGCGATATGTAACCAACCAATAAA
TTTTATCCGGCTTCTAAAGCCTCTTAAGTGAGTGTAGTAAATTCTTTGCC
CTCAAGAACCCAAGGTCATCAGACAAACTTTGAACAAGATAACAAAATCT
TGTCAGAAAATACTTTAAAGTTCCCAATTTTTTTGTAAAGAAACATTTTT
TCAAGTGTTCACGAAGGCTTTGTTAATCTAATCTAAGGAAACGTTTGGGT
TGTGTCTCACTTTTAGTACCCAGCCGCCATCTTAGGTTGACGCAAAAAAA
AACAAAATGGAAGCTGTTTTAGCAATTTACCGCTGTTTAATGCGAAACTT
TGGTCTTTATTGTAATGTCCTTTGAAGATATAGGGGTTCATGCAGAATTT
GCGGAGTTATTCAGGCTTGAGTTGGTACTGGTGTGGTGTATTATTGTGTT
TTTCATAAAATATTTTTCGTATTTAAAACTTTCTAGGTTATTCTGTAACT
TTTAATTTAAAAGAACGAAATAAACTCGATTGCTTTCCGCCATGTCATTG
GTTATGAGAATAATCTCGACCAATGACAGGCGAGAAAGCGTTCGAGCTCA
TTCTAAAGTTCGAATTGACAGTTACAGAATAACCTAAATAGCCATAGAAT
ACCTAGCTTATCGTTATTTTTTCCACAGGAACGTATTTACGAAGAGTGTC
AGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGGCT
GAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTACCC
GAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGGTA
AGCACTAA
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Coding sequence (CDS) from alignment at scaffold_14312:2260..6517-

>GSSPFG00001269001-RA ID=GSSPFG00001269001-RA|Name=GSSPFG00001269001-RA|organism=Spodoptera frugiperda corn|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_14312:2260..6517- (Spodoptera frugiperda corn)
TATCTTTTACAAAAATATGTAACTTATCATTATTTTCCAGAAACGGCCAT
GGGTACCCAGTTGGACTCGGATTCCTCTACAAAGACTCAAGAGTATAAAA
CAGCTATCCTTCAAATAGGAGGTTTACTAATGGGTCGTCTCACAAGAGTA
TGGCTGCACAATGAATATATCTTCCGAAAGTTCCCAATTGGTAAACAGTT
TGAGAAATGTCTAGAAAAAGTCCATTCTTTTGCTGATAACGTGATTATGG
AGAGGAAGAAGAATTGGACACCTGGACAGAGTGATGTGGTAGAAGATGAA
GTGGGGGGGAAGAAGAGATTGGCCATGCTCGATGTATTATTGGAAGCTGA
GAGGAAGGGAGAAATTGATCTAGAGGGAATAAGAGAAGAAGTTAATACGT
TTATGTTTGAGGGACACGATACTACAGCAATGGCGCTCGTTTTTGGACTA
ATGTTGCTAGCAGACCATCCAGAAGTACAGGAACGTATTTACGAAGAGTG
TCAGACGATCCTGGGTGATTCAGACACTACTCCAACGATGTCTGATCTGG
CTGAAATGAAGTACCTTGAAGCTGTCATCAAGGAGACTTTAAGACTGTAC
CCGAGTGTACCGTTCATTGCCCGTGAGGTGACCGAGGACTTTATGTTGGG
TAAGCACTAA
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Synonyms
The feature 'GSSPFG00001269001-RA' has the following synonyms
Synonym
GSSPFG00001269001-PA
GSSPFP00001269001
GSSPFT00001269001
GSSPFG00001269001