SFRICE004888-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE004888-RA
Unique NameSFRICE004888-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_007134contigSFRU_RICE_007134:104858..111147 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE004888
eAED0.28
QI0|0|0|1|1|1|5|0|277
AED0.27
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE004888SFRICE004888Spodoptera frugiperda ricegeneSFRU_RICE_007134 104858..111147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004888-RASFRICE004888-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_007134 104858..111147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004888-RA-exonSFRICE004888-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_007134 104858..105062 +
SFRICE004888-RA-exonSFRICE004888-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_007134 107462..107510 +
SFRICE004888-RA-exonSFRICE004888-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_007134 108021..108204 +
SFRICE004888-RA-exonSFRICE004888-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_007134 110301..110453 +
SFRICE004888-RA-exonSFRICE004888-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_007134 110905..111147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE004888-RA-CDSSFRICE004888-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_007134 104858..105062 +
SFRICE004888-RA-CDSSFRICE004888-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_007134 107462..107510 +
SFRICE004888-RA-CDSSFRICE004888-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_007134 108021..108204 +
SFRICE004888-RA-CDSSFRICE004888-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_007134 110301..110453 +
SFRICE004888-RA-CDSSFRICE004888-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_007134 110905..111147 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE004888-RA ID=SFRICE004888-RA|Name=SFRICE004888-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=834bp|location=Sequence derived from alignment at SFRU_RICE_007134:104858..111147+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATATAGATCTGAAGTTGCCCACGCGCAATGTGTTGACTGGCGC
TGTAGTGAATTGGGAGGATGACGAGATGGGTTTCGGGGACAGTCCAAGTA
ACCTGACCTTGGCGTGGAAGGACCTGTCAGTTTATAGGAAGAAGAAGACA
CAGACCAGTATATGGAGATCACCGGTTTATGAGGAGATCAGGGTCTTGCA
TGGAGTTAATGGAATCGTGTCTTCAGGCAACCTGGTTGCCTTAATGGGTT
CTAGTGGTGCCGGCAAAACGACATTACTAGCAGCCATAAGCAGAAGAGAC
AAGAGTGCTATGACCGGCTACCTGATGCTGAACGGCAGACTGGCTGGTGC
TGACCTGATATCCAGGATCTCCGGCTTCGTACCACAGGAGGACTTGGCTA
TCGAAGACCTGACTGTTGATGAACATATGACGTTTATGGCTCGTATGATG
ATGGACAAGAGGTCAACAAAAATAGTTCGAGCGAGGCGCGTGCAACAATT
GCTAAGCGAGCTTGGAGTAAACAACTGCACCAAAACCAAACTAAAGGCTC
TGTCTGGAGGAGAGAGAAAGAGAGTGTCTTTGGCTGTTCAGCTGCTAAAC
GACCCTCCAATTCTATTCTGCGACGAACCAACTACTGGGTTAGACAGTTG
GGGAGCTGCTGCAGTGGTCTCTCGCCTTAGGAAGCTGGCCATTGGAGGCA
AGCTGGTGGTATGCTCAGTGCACCAACCGGCTTCTGGAGTGTTCGAGCTG
TTCCACCAAGTTGTACTGCTGGCTAATGGAAGGATAGCGTTCCACGGCAC
TATTGAACAAGCTGATCAGTTCTTCGCATCGTGA
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protein sequence of SFRICE004888-RA

>SFRICE004888-PA ID=SFRICE004888-PA|Name=SFRICE004888-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=278bp
MKDIDLKLPTRNVLTGAVVNWEDDEMGFGDSPSNLTLAWKDLSVYRKKKT
QTSIWRSPVYEEIRVLHGVNGIVSSGNLVALMGSSGAGKTTLLAAISRRD
KSAMTGYLMLNGRLAGADLISRISGFVPQEDLAIEDLTVDEHMTFMARMM
MDKRSTKIVRARRVQQLLSELGVNNCTKTKLKALSGGERKRVSLAVQLLN
DPPILFCDEPTTGLDSWGAAAVVSRLRKLAIGGKLVVCSVHQPASGVFEL
FHQVVLLANGRIAFHGTIEQADQFFAS.
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mRNA from alignment at SFRU_RICE_007134:104858..111147+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE004888-RA ID=SFRICE004888-RA|Name=SFRICE004888-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=6290bp|location=Sequence derived from alignment at SFRU_RICE_007134:104858..111147+ (Spodoptera frugiperda rice)
ATGAAGGATATAGATCTGAAGTTGCCCACGCGCAATGTGTTGACTGGCGC
TGTAGTGAATTGGGAGGATGACGAGATGGGTTTCGGGGACAGTCCAAGTA
ACCTGACCTTGGCGTGGAAGGACCTGTCAGTTTATAGGAAGAAGAAGACA
CAGACCAGTATATGGAGATCACCGGTTTATGAGGAGATCAGGGTCTTGCA
TGGAGGTTTGTATGACATTGTATTCATATATGTAATTGATTTGATGTGAA
ACAGGGAGCGGTTGCGATTCCCGCACGGAGCAACTCTTTGTGTGATCCAC
AAATTGTTGTTCCGGATCTGGGGTATGTGAAATTGTTTGTTTGTAAACGC
ACTTATGACTCAGGAGAAAATCCTAGTACATGGCAACGTTTAAAAAAAAT
ACAATAAATAATTGCCTAGTTTAGTTTAGCCGTATCTTGAAAACTAAATA
GGACCTGGCCTTTCTTTCAGTTATAACTTAAATATGATAACTAGTATGAA
ATTGATCTAATTAAGGTAAGTACGTAGACAAGAATAATACCTTTTGTATA
TTAGTTAGAGAATTTGATACTTAAAACTTTATTCCTTTACCTATGGTTAC
ACCTAAATCATAACTTTACAAAGCGACTTTACAAAGATGTACATATTTTA
ACGAAGTGATGAAGTTATTACCTGACAATTATTATGTGTTTTCCTTCATT
AATTATTAATTTATCGACCTTACATCTTTATTATACATGTCTTGCAACAG
ATTTATATGCAGATTATTTTATTTTATGACACTCCTTTATATGACAGCGA
GTCAATCAATTTTCGGACCATAAATTCATGTCAATTTGATCTGTAGCAGG
TGGCTTTATTATAGGTACTTACTATTATTAATGACTTATTAATCATAATA
AATAACTAATTTGAGTTCACCTAGGTTTTATATTTAATGCTAAAAATGTA
TAATTATAATTTATCTTTTGTCAACCGGTTGTTTTCGTATAGGATGTATT
TTTGGAAGTAGTTTTTTTATATTTTGGGAAAACTTTCTTGATGTTTTCAA
ATGCTTACATACATTAACATTGCTCATGTTTGTCAACCAAAGAGATTTCT
CTCCTGATTCGCTGTTTTACCATTAAAGATAGAATAATAAATTTAATTTT
TTTGATCATTTACATAGATCAAAATGCAATATACAGAACTTTATTATAAT
AACGACCAATAATACAAATAATTATCGTAAAAATACACTCTAATACAAAT
TATTTTGTTAATAATAACTTGTTATTAGTTCTTTTCTAGAACACAAATGT
GAATTAGAAAAAACAGGATTTCAATATAATACAAATTTTCCTTAATGTAG
ACAATTAAATTAAAGTGTAACAATAAAATATTACAATTAAAATGGGTTGA
TAAATAATTCATTTCTCTAATAATCGATATATTGCACAATAATTATAATA
AAAATGTCACGTGAACTTGTTTAATGGATGTAACGTTTTATTATTTAATA
AATATGTTACTTAGAATTGATTAGAATATATGGCTCACTCACGTGATTGT
TCGAAAATGTTCGATTAGTTTTAAGCCCCCGGCGTAACTTGAAACTAGTC
GGCCACACTCGAATAGTTACAGTTAGTACATTTTACAGTAGTTAATAAAT
AAACATATTGCTTGGAACGCTCGCCCAAATAATGCTAAGTAACTTTTACA
CAAAAATGTTTTTTTATGACCCAATTATTACGTTTTTTCACATATTTAAA
TAAAATGGCCGTATTGACAAACTGGTATTGAAATGAATTATTTCATAAGC
AGCCCAATTAAATTGTTGTTATTTTAAATACAGTTTTGATATCGTGGGTT
TAAAGTTTCGATTTGTTTGTAGATCATGGTGTTTATTCTAATTTATGTAA
ATATAGTTACTTATGTCGTATGAAATTATGTATTCGGTTGTGTACCGGAT
TTTATTCTCTTTGTGAGGAAAAGTCACAGATTGGTAGAATTCGACTGCCA
CGTTGGCCGAGTGGTTGCAAATGCGACTGCCGGGCAAGGGGTCTCGGGTT
CGATTCCCGAATCGGGCGAAGGTTTACTGGGCTTTTTTCGGTTTTTCGAA
AATTTCTCAGTGGTAGCACGGAGTCTGGAAATGTTCCCGGTAAATGGCAA
TAGGCTCACCACCTATTACATGGGACTTGCAATATAAATTGTGAAAAGTG
GATGTACACAGTGGCATTACGTGCCATAATGTGCCCTGCCAACCCCTTCG
GGGATTAAAGGCGTGACGATAAGTATGTATGTATGGTAGAACTTTAGAAA
ATATAAACGGAGATCAATCGAATAATTTAATAATCATAGTTTAGTTCAGG
GATGGCGAATCATTGGCTCGCGGGCTAATTATGGCACGCGGCATAATATT
TTGAGCACGTTATTAATCCTATTCTCCTATAATCCTATGTCTGTCGTTAT
TTTCAGATATTAAAATAATAATATACTTACCAAAACTACAATAAAAGAAA
ACATTTTAATGGCACATTTAGCACCACTAAATTATTTGAATGTAATTTTA
TTAATTATTAGTAATTATTAATATCAATTTAATAATAGACAATTATCTTT
TCAGTTAATGGAATCGTGTCTTCAGGCAACCTGGTTGCCTTAATGGGTTC
TAGGTAAGTGTCCATTATATTCGTAAGTTAACTATACCGTTTAAAATTCC
ACAAATTTAAAGAAATAATTAACCAAGATTTAGATTCGTTCTCCTGGTCA
ATCGAAAATCTATTATTTTGAAAAGAAATATGCAGATGCAGAACGGCTCT
AACGTTCTCGCCAGTGAACTCGCAAAACTGACCCTCACAGCTAAAAGGCT
GAAACGGAAGAATGTGTTTTGAAAAGGCAGAAGGGACATTGGTTCATTCG
CCTTCGGCATAATAACCCAATTTATCAACTTAATAGTCTTGCGACTTTTC
GCCGGCTAATATAAAAAAAAAAGATGGGGATTAACCATTATATTGTCCTT
TCCATAGTTCATTTAGATAGATAGAATTCTTAGCATTATAAATATTCTTG
TTTAAAATCTGGTAGTTAAGATAGTGTATTACCATTAACTGCCATTGCGA
GTCCAAACTTAATGTATTGTCTTACAAAAGATCACGTATTAATATGACCC
ATTTTCTATCCAGTGGTGCCGGCAAAACGACATTACTAGCAGCCATAAGC
AGAAGAGACAAGAGTGCTATGACCGGCTACCTGATGCTGAACGGCAGACT
GGCTGGTGCTGACCTGATATCCAGGATCTCCGGCTTCGTACCACAGGAGG
ACTTGGCTATCGAAGACCTGACTGTTGATGAACATATGACGTTTATGGTA
AGAAGATATCTGTTTTGTTTTTTTATGGTATAGTACGACAGACGGATCAC
TTGATGGTAAGCAGTCGGGACCGCCCTTGGAAAATTGTACACTACTTTTT
TTGTAATGAAGGGTGTATATAGTTGGCTTAATGGTATATTTTGATATGAA
ATTGTTATATTACATATGTTATTAAATAGTATTTTTATTACCACGAGTAC
TTTGTAAAATGTCAACTTCATTTCAGTTGCATGGGACAAATATGTATAAT
AAAATATGTAACCCGCTGCACATAAGTCGATTGGAAACGATTCCCGATTT
TTAACGATAATTACGAGTAATAAGTTCATCAATATGGTTGATAGTGGTTG
ATAGCGAAAGCATCGATTTCCTTTTTTTAGTAATGAAAGAATTCCATAAT
ACCACATTTAGTATTAATTAGCCTAATTACAATTCCAATTATTTATTAAA
TCAGTTGTAGAACAACGTAATTTAATGTTTGTTAGTACATTAGATGAAAG
ATACCTACGTAACTAAAGAATCTCATATTACTGGTTTGTAGATCATTGAG
CTTAACGTTACGCAATATTAATATTTACTACCTGTTTTATTGCTTAGGGA
TGGGTTTATTATTTATATGAAGTTTTTGTTTAGCACATATACAGCACATA
AAAATTCACGAGTTTATATTTGCCCCCCCCCCCCTTCTCTGGATGTCGTC
TTCACCGTACGGTAAAAAATCTGAAGACGATACTTTTTAACATACTTTTT
CTAATAATAATGTCTATCTCTCCTACTAACTGCCGCAATCAGAGACATTT
AATGATTACTTAAACTATACCTCAGTATCGATTTTGTATAGAAAACAATT
GCTAAGGGCTGGGTTAAGTAATCATTAAATAACTCTGAGTACGGCGGTAA
GACGAATTAGAGCGACCCTTACCTTCGTTAGCATTAATTAATAATAAATC
ACTCTTTTGTAAGAGTCTTCTTTCTCTCATTCTCACTAAATATCCGTAGG
TACCATGTTAAACTTTTTTTTTAAATACGTTGCCCTTTCTTAATTATTAT
CTCCTGTGTTACGGTTCCCCATCTCCCGCACCAACCGTGCTGTCAAATTT
CCATTTGTCAAACGTTAAATATTTACTACTCTTTATTTTATGTTTATTAT
TAAGGGTCTTATTTTAGTACCAGTTTAACGCTAACCAACCTATAAAATAA
GAATATCTAATCATGTTTTTTGCATGTCTATCAAATTAAAGTTCTATGAT
GAGTACCGCCAACGTCCTCCATCACATAAATAGAGTAGGCGCGTCTTGTT
TGTCACTAAGGTCAATTAACTTCTTTAATTAATAAATTATTATTCATCAA
CAGATCTTGTTACTTTGCTACTTATCTCAAATCTCTGATTGTTATCTGAT
ATATCAAAACAATTTGACATTTCACGATATCACTTCTTCTGATTTGATGC
CTAAGATTAAAGGTTATAAATAAATTGGATACTCGTAGCCATCATAAAAA
TTAATTGAAATAAACAACCTCATTTTTAGCTTGATTAATTAAAGCATGTG
GCGTATGTAATTTGGGTATAGTAAGTTGAACTTTGTTGAACTTTTCAACG
TCTCTCACGGTTGCACGTTGAGTAGAGATCGGTATTTTCTTTCGAAGTAG
CACAGCATGGAAGCCTAGTAACAAAATTATTATTTAATTGAAAGGTTTTT
CATTAAAATAAACAGTTCGATATACTACATGGACTTATACTAAAAGTCCT
CACGCATGGCGGACATATGTTTTTTTTTGTGATGGGGGAAAATCGTCCAA
TGATTTCTCCCGCCTTGGGCGAGGCGAAAGGGAGTATCACTGATTAAAAA
CCACCTCGTCCCTACTCCTGCTTTTTGAGCCGAAGTACCGGTAAACCTGC
TAGGTAGTCCACAACTCCAAACCCCGATGGTGGACATGAGCGGCCTTATT
TATAAAAACTTTTTCAGATTCCGTTATTTTTAAGGTTGTTAAAAGTTTAA
AAGCTTTGTGTTACGTAATCTGTTTATTCCAAAAAGTCAATCGAATAAAC
AAATAGTTTAAATCAAGTCTCCAAAACCTTTTCTTCCATTCAGGCTCGTA
TGATGATGGACAAGAGGTCAACAAAAATAGTTCGAGCGAGGCGCGTGCAA
CAATTGCTAAGCGAGCTTGGAGTAAACAACTGCACCAAAACCAAACTAAA
GGCTCTGTCTGGAGGAGAGAGAAAGAGAGTGTCTTTGGCTGTTCAGGTAA
GTCACAAAAATGAGGGATGAATTATTTGAAGTTGTAAGCTTTCTGTCAAT
CTGATGGATTCTATTACTGTAACATAATTATGCATACTTACAAGACTACT
GATGGATTAGTACGAGTTTGTTTTACGTTGAATGAGATCGGAACGAGATC
GCGTTCGGCGCTCTGATTGGCCGGCGCCAATGAAAACGCCAAACGTGGTG
TCGTTAAACGTAAAGCAAACTGATACCAACCCTCTTTTGCGTACAGAAAT
TATCGATACCCAATATCTTCTAAGCTTTTGTAAAAAAAAGAGAAATGATG
TTTTGCATTGACTATACTGTTTCCTTTCGAAATTTCCATTTAAATTAATG
TTCAAAAGCACTACTTCTTCTTTTTACTGACTAGTGAAGAATTTACTGCA
TCGAAAGAAACACAAAATCCCAAACTCAAACTTATTTTGCTCCACAGCTG
CTAAACGACCCTCCAATTCTATTCTGCGACGAACCAACTACTGGGTTAGA
CAGTTGGGGAGCTGCTGCAGTGGTCTCTCGCCTTAGGAAGCTGGCCATTG
GAGGCAAGCTGGTGGTATGCTCAGTGCACCAACCGGCTTCTGGAGTGTTC
GAGCTGTTCCACCAAGTTGTACTGCTGGCTAATGGAAGGATAGCGTTCCA
CGGCACTATTGAACAAGCTGATCAGTTCTTCGCATCGTGA
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Coding sequence (CDS) from alignment at SFRU_RICE_007134:104858..111147+

>SFRICE004888-RA ID=SFRICE004888-RA|Name=SFRICE004888-RA|organism=Spodoptera frugiperda rice|type=CDS|length=834bp|location=Sequence derived from alignment at SFRU_RICE_007134:104858..111147+ (Spodoptera frugiperda rice)
ATGAAGGATATAGATCTGAAGTTGCCCACGCGCAATGTGTTGACTGGCGC
TGTAGTGAATTGGGAGGATGACGAGATGGGTTTCGGGGACAGTCCAAGTA
ACCTGACCTTGGCGTGGAAGGACCTGTCAGTTTATAGGAAGAAGAAGACA
CAGACCAGTATATGGAGATCACCGGTTTATGAGGAGATCAGGGTCTTGCA
TGGAGTTAATGGAATCGTGTCTTCAGGCAACCTGGTTGCCTTAATGGGTT
CTAGTGGTGCCGGCAAAACGACATTACTAGCAGCCATAAGCAGAAGAGAC
AAGAGTGCTATGACCGGCTACCTGATGCTGAACGGCAGACTGGCTGGTGC
TGACCTGATATCCAGGATCTCCGGCTTCGTACCACAGGAGGACTTGGCTA
TCGAAGACCTGACTGTTGATGAACATATGACGTTTATGGCTCGTATGATG
ATGGACAAGAGGTCAACAAAAATAGTTCGAGCGAGGCGCGTGCAACAATT
GCTAAGCGAGCTTGGAGTAAACAACTGCACCAAAACCAAACTAAAGGCTC
TGTCTGGAGGAGAGAGAAAGAGAGTGTCTTTGGCTGTTCAGCTGCTAAAC
GACCCTCCAATTCTATTCTGCGACGAACCAACTACTGGGTTAGACAGTTG
GGGAGCTGCTGCAGTGGTCTCTCGCCTTAGGAAGCTGGCCATTGGAGGCA
AGCTGGTGGTATGCTCAGTGCACCAACCGGCTTCTGGAGTGTTCGAGCTG
TTCCACCAAGTTGTACTGCTGGCTAATGGAAGGATAGCGTTCCACGGCAC
TATTGAACAAGCTGATCAGTTCTTCGCATCGTGA
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Synonyms
The feature 'SFRICE004888-RA' has the following synonyms
Synonym
SFRICE004888-PA
SFRICE004888
maker-SFRU_RICE_007134-augustus-gene-0.16-mRNA-1