SFRICE016727-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE016727-RA
Unique NameSFRICE016727-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_007179contigSFRU_RICE_007179:34259..37686 +    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE016727
eAED0.08
QI94|1|1|1|1|1|3|707|627
AED0.08
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE016727SFRICE016727Spodoptera frugiperda ricegeneSFRU_RICE_007179 34259..37686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE016727-RASFRICE016727-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_007179 34353..36979 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE016727-RA-exonSFRICE016727-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_007179 34259..34529 +
SFRICE016727-RA-exonSFRICE016727-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_007179 34753..36005 +
SFRICE016727-RA-exonSFRICE016727-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_007179 36526..37686 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE016727-RA-five_prime_UTRSFRICE016727-RA-five_prime_UTR-4Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_007179 34259..34352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE016727-RA-CDSSFRICE016727-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_007179 34353..34529 +
SFRICE016727-RA-CDSSFRICE016727-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_007179 34753..36005 +
SFRICE016727-RA-CDSSFRICE016727-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_007179 36526..36979 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE016727-RA-three_prime_UTRSFRICE016727-RA-three_prime_UTR-8Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_007179 36980..37686 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE016727-RA ID=SFRICE016727-RA|Name=SFRICE016727-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2685bp|location=Sequence derived from alignment at SFRU_RICE_007179:34259..37686+ (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
CTAACCGAAACCATTGTGTATATCTAATCAAGATTAGTTTTCCCTCCCTG
TGATCCCTTTCATCCAGTTCTAGATCAGCCGTGGTAAAGAAACCATGTTG
AAAATTTTGACTCTTTGTGCGGTCTTAGGGCTGGCTTTATGTCAGCAGCC
ACCCCAAGTTGTGCTACCTGGCCAAGGTACGGTGATAGGAACAATATCTA
CTGAAGGAGATTACTTCGAGTTCCACGGTATACCATACGCGGACGCGACT
TCGGGCATCAACCGATTTAAGGCACCGCTACCACCACCTTCATTCCAAAC
CCCATTAACAGCTAACCGAAAAGACATAAAATGTGTTCGAGCCTTAGGTG
CAGGATATGAAGGCACCGAGGATTGTCTGGTAGCTAACATCTACACACCA
ACTATAGTTAATACAAGGAAACTGCCCGTTATGGTATGGATTAAAGGGAA
AGAATTCGATCGCATTAACAATCCAGAATTATCTTTCCGCAATTTTGTTG
AAAAGGATGTTGTTGTAGTGTCATTGAATTACCGTGAATCGATTTTAGGA
TTCCTCTGTCTTGGCACCGAAACTGCACCCGGTAATGCCGGATTGAAAGA
TATTATTGCAGGTTTAAAGTGGGTCCAGAAAAATATCGCACGATTTGGGG
GTGACCCCGACTCTATTACCCTCGTTGGCCATGGAAGTGGTGGAGCTGCC
GTGGACTTGGTCACAATGTCTCCAATGAGTAAAGGTTTGGTACAAAAAGC
CATTGCTCAAAGTGGCAACGCATATTCTCCTTGGGCTGTATCTCGTGATA
ACTTGAAACATGCTATCGATGTAGCTGAAGCTCTTGGACATACAATAACC
AGCATTGAACAGTTATCAGAGGTTTTTACCAGAACTAGTGTCGGAGCTTT
GATGGGTGTTATCAATGAACTTGACTTAACTGATAATTCTTTAGCCTTTG
CTCCTTGTGTGGAACGTAAAGAATTGGAAGGAGTAGAACCTTTTCTTATA
AAAACTCCTGCTGAAATTGTACGTGACAAAGAATTGTCAAATATTCCTAC
CATTATTGGATTTGTAGATTACGAAGGTACTATTCGATCAGAGGAAGCAT
TTGGTAACGATTGGCTAAAGAGAATGGAAGAATCGTTCAGTGAATTTATA
CAGCCCGATTTAGAAATTGAAGACGATGCAGCAGTAGTAGATGAAATTAA
AAAATATTATTTTGGATCGAGTGGAACAAAAACAACAAATTCATATGAAC
CTTACTTAAAATATCACGGTGACACAATGATTCTTATATCTTCTTTAAGA
GAAGTTAGAAATCGAGTATTTGCTACTACATCAAATACCTATTTATATCA
GTTTTCATATAAAGGAACTCTCGGAGAAGCATTGGTTGGACCCATAAACG
TTGATTCAGCGCCTCACGGTGCAGAAGTGGCTTATTTGTTCCATGGAGGT
TCTGGAGGGACTGAGTTGGATCATCTGGTTAGTAAAATTCTCGTTGACAG
ATGGACTAACTTCGCTAGGAATGGTAACCCCACAACTACTCATTCAACAG
TAAATTGGGAGCCTTATACACAAAACGAAGCAAAATTCTTGCGCATAGGC
TCTACTGAAGAAATTGTTGGACGTGGAGGTCGAGAAACCCAACCTATAAT
GGAAATAGCTTTGATTAATCCCCATCCCCAAACTGCTGCATTTTGGGAAG
GTATTTACTCATCACATTTCTTAGATGCACAGAGCAATTGGGAAATTATT
GACAGGAATGAAGATACTCCTACAACTACCCTGAGCCCAGGTGGTATTGA
CGAGTGTGATGGTGATGACTGTAGTGATGACAATGGTAGCGGCAACGGTG
ATGATGACTGCGAAGGTGATGACTGTGATGAGGAAAATTCAGCCTCAACG
GCTATTAGCTACACTTTCTTAATAATTAGTCTGTTTTCAATTCTGAACCA
TTTCCACTCCTCTCAGATTTTGTCGTAGAAACATCTCAATAGATTTACTT
TCTATTGTTTCTGTTTTTTAACATACATAATATGCATCGTCAGTGTTCTT
GTTGAAGCTAGCTCTTATATTTCCATTTATTTTGAAGAAAACACCAAAAT
ATGGACAAGTTTTTTTTTCTAATTACTAAATTATTTCACAGTCTTCTTTG
GATTTTGTATTGAAATTCATTTGAAGAACGTAATGTATATTTTACTATGT
TTTCTTGTAGTATTAATATATTGTTAATAAGTTTAATTGTTTTAAGATAT
TTTATTGCGCCATTGAGTGCAATTTTAATATTATTTTTTTAATACTAATT
TAGTCTAGAACCATTTTTCTTTTTTAGTTAGTAGTTACTTCCACTTTGAT
CAGACATTTTAAGTAACTTTTTAATACTTATGCCTACCGATTCTCTATTT
ACTCGAATTTCTGAATAAGGTACTTAATGGTAGCTGCACCGACGTAATTT
AACAAAAACATATTTAGCTTTTAATGCCATCCTTATGTCTACGAGATAGA
GTTAAAAATTGGTTGAATTTAACTGCTAAGTAATTTAAAGTTATTAAAAT
GGTCTGATCTTTGCACTCACCAAATGAACTTTGCTACCATGCGTTTGTAT
GAAAGTTAAAGTTTTGAACTTCTTTAAGTTAGCCATATTTTATTTTTAAT
TTTGTAAATATAATATAAAAACTCCAAAAGAAAAA
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protein sequence of SFRICE016727-RA

>SFRICE016727-PA ID=SFRICE016727-PA|Name=SFRICE016727-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=628bp
MLKILTLCAVLGLALCQQPPQVVLPGQGTVIGTISTEGDYFEFHGIPYAD
ATSGINRFKAPLPPPSFQTPLTANRKDIKCVRALGAGYEGTEDCLVANIY
TPTIVNTRKLPVMVWIKGKEFDRINNPELSFRNFVEKDVVVVSLNYRESI
LGFLCLGTETAPGNAGLKDIIAGLKWVQKNIARFGGDPDSITLVGHGSGG
AAVDLVTMSPMSKGLVQKAIAQSGNAYSPWAVSRDNLKHAIDVAEALGHT
ITSIEQLSEVFTRTSVGALMGVINELDLTDNSLAFAPCVERKELEGVEPF
LIKTPAEIVRDKELSNIPTIIGFVDYEGTIRSEEAFGNDWLKRMEESFSE
FIQPDLEIEDDAAVVDEIKKYYFGSSGTKTTNSYEPYLKYHGDTMILISS
LREVRNRVFATTSNTYLYQFSYKGTLGEALVGPINVDSAPHGAEVAYLFH
GGSGGTELDHLVSKILVDRWTNFARNGNPTTTHSTVNWEPYTQNEAKFLR
IGSTEEIVGRGGRETQPIMEIALINPHPQTAAFWEGIYSSHFLDAQSNWE
IIDRNEDTPTTTLSPGGIDECDGDDCSDDNGSGNGDDDCEGDDCDEENSA
STAISYTFLIISLFSILNHFHSSQILS.
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mRNA from alignment at SFRU_RICE_007179:34259..37686+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE016727-RA ID=SFRICE016727-RA|Name=SFRICE016727-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=3428bp|location=Sequence derived from alignment at SFRU_RICE_007179:34259..37686+ (Spodoptera frugiperda rice)
CTAACCGAAACCATTGTGTATATCTAATCAAGATTAGTTTTCCCTCCCTG
TGATCCCTTTCATCCAGTTCTAGATCAGCCGTGGTAAAGAAACCATGTTG
AAAATTTTGACTCTTTGTGCGGTCTTAGGGCTGGCTTTATGTCAGCAGCC
ACCCCAAGTTGTGCTACCTGGCCAAGGTACGGTGATAGGAACAATATCTA
CTGAAGGAGATTACTTCGAGTTCCACGGTATACCATACGCGGACGCGACT
TCGGGCATCAACCGATTTAAGGTAATATTAATTATTATTATTGCAGCCAA
TGGAACTTAAGCATTTGCAATGAATGTTACGTGCCGCAAAAATTTTAGTA
GGTACAATTGTAGATACAATATATATTTTAATTCTACATTATTTTCTCAA
TATCTTTATTACACTTTGTATGCTACATAGACGTATAATATAACTATAGT
GACACAAATACAAACTTATTATTTAGAAATATGTTTACTTGCAGGCACCG
CTACCACCACCTTCATTCCAAACCCCATTAACAGCTAACCGAAAAGACAT
AAAATGTGTTCGAGCCTTAGGTGCAGGATATGAAGGCACCGAGGATTGTC
TGGTAGCTAACATCTACACACCAACTATAGTTAATACAAGGAAACTGCCC
GTTATGGTATGGATTAAAGGGAAAGAATTCGATCGCATTAACAATCCAGA
ATTATCTTTCCGCAATTTTGTTGAAAAGGATGTTGTTGTAGTGTCATTGA
ATTACCGTGAATCGATTTTAGGATTCCTCTGTCTTGGCACCGAAACTGCA
CCCGGTAATGCCGGATTGAAAGATATTATTGCAGGTTTAAAGTGGGTCCA
GAAAAATATCGCACGATTTGGGGGTGACCCCGACTCTATTACCCTCGTTG
GCCATGGAAGTGGTGGAGCTGCCGTGGACTTGGTCACAATGTCTCCAATG
AGTAAAGGTTTGGTACAAAAAGCCATTGCTCAAAGTGGCAACGCATATTC
TCCTTGGGCTGTATCTCGTGATAACTTGAAACATGCTATCGATGTAGCTG
AAGCTCTTGGACATACAATAACCAGCATTGAACAGTTATCAGAGGTTTTT
ACCAGAACTAGTGTCGGAGCTTTGATGGGTGTTATCAATGAACTTGACTT
AACTGATAATTCTTTAGCCTTTGCTCCTTGTGTGGAACGTAAAGAATTGG
AAGGAGTAGAACCTTTTCTTATAAAAACTCCTGCTGAAATTGTACGTGAC
AAAGAATTGTCAAATATTCCTACCATTATTGGATTTGTAGATTACGAAGG
TACTATTCGATCAGAGGAAGCATTTGGTAACGATTGGCTAAAGAGAATGG
AAGAATCGTTCAGTGAATTTATACAGCCCGATTTAGAAATTGAAGACGAT
GCAGCAGTAGTAGATGAAATTAAAAAATATTATTTTGGATCGAGTGGAAC
AAAAACAACAAATTCATATGAACCTTACTTAAAATATCACGGTGACACAA
TGATTCTTATATCTTCTTTAAGAGAAGTTAGAAATCGAGTATTTGCTACT
ACATCAAATACCTATTTATATCAGTTTTCATATAAAGGAACTCTCGGAGA
AGCATTGGTTGGACCCATAAACGTTGATTCAGCGCCTCACGGTGCAGAAG
TGGCTTATTTGTTCCATGGAGGTTCTGGAGGGACTGAGTTGGATCATCTG
GTTAGTAAAATTCTCGTTGACAGATGGACTAACTTCGCTAGGAATGGGTG
AGTGTTCATACAAAACTTTCTAAATATTATATGTGTTATATAATATAAAC
TAGATTTCTTGTCACAGTTTTGATGCGTTTTTAAGTCGTGTTTAATAAAA
ACAGTGTTTTAAAGCATTTCTATTTAACATAGTGCTCGTAGCATGAGACA
AATGTGATGAATCACTTCACATTGTCGTCTAAATTATGCGTCCAATAAAA
ACGAAAAAGACAATCTTCATGAAATTACATTCAATTAATTAATTAATAAC
GTAGTTATTCTTAAATTTATCAAAAAAAAAATCGAGTTGTTTATTGTTTA
ACAATTTCAAAATCGAACCGGTTTGTTCAGGTAGTTAAAACGTTATTGAC
TATAAATTATGATTATCATATTCTGTGAATTGATGTAACATAACATGTTA
ATTAATCTTTTTACAAAGATAAGATACATTGTATCCAACACAAAATATGT
CATTGACTGACGTTCAGTTCAGGATCATAATTAAAAAAAAACTTATTCTA
TATATTTTTTGTTGCAGTAACCCCACAACTACTCATTCAACAGTAAATTG
GGAGCCTTATACACAAAACGAAGCAAAATTCTTGCGCATAGGCTCTACTG
AAGAAATTGTTGGACGTGGAGGTCGAGAAACCCAACCTATAATGGAAATA
GCTTTGATTAATCCCCATCCCCAAACTGCTGCATTTTGGGAAGGTATTTA
CTCATCACATTTCTTAGATGCACAGAGCAATTGGGAAATTATTGACAGGA
ATGAAGATACTCCTACAACTACCCTGAGCCCAGGTGGTATTGACGAGTGT
GATGGTGATGACTGTAGTGATGACAATGGTAGCGGCAACGGTGATGATGA
CTGCGAAGGTGATGACTGTGATGAGGAAAATTCAGCCTCAACGGCTATTA
GCTACACTTTCTTAATAATTAGTCTGTTTTCAATTCTGAACCATTTCCAC
TCCTCTCAGATTTTGTCGTAGAAACATCTCAATAGATTTACTTTCTATTG
TTTCTGTTTTTTAACATACATAATATGCATCGTCAGTGTTCTTGTTGAAG
CTAGCTCTTATATTTCCATTTATTTTGAAGAAAACACCAAAATATGGACA
AGTTTTTTTTTCTAATTACTAAATTATTTCACAGTCTTCTTTGGATTTTG
TATTGAAATTCATTTGAAGAACGTAATGTATATTTTACTATGTTTTCTTG
TAGTATTAATATATTGTTAATAAGTTTAATTGTTTTAAGATATTTTATTG
CGCCATTGAGTGCAATTTTAATATTATTTTTTTAATACTAATTTAGTCTA
GAACCATTTTTCTTTTTTAGTTAGTAGTTACTTCCACTTTGATCAGACAT
TTTAAGTAACTTTTTAATACTTATGCCTACCGATTCTCTATTTACTCGAA
TTTCTGAATAAGGTACTTAATGGTAGCTGCACCGACGTAATTTAACAAAA
ACATATTTAGCTTTTAATGCCATCCTTATGTCTACGAGATAGAGTTAAAA
ATTGGTTGAATTTAACTGCTAAGTAATTTAAAGTTATTAAAATGGTCTGA
TCTTTGCACTCACCAAATGAACTTTGCTACCATGCGTTTGTATGAAAGTT
AAAGTTTTGAACTTCTTTAAGTTAGCCATATTTTATTTTTAATTTTGTAA
ATATAATATAAAAACTCCAAAAGAAAAA
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Coding sequence (CDS) from alignment at SFRU_RICE_007179:34259..37686+

>SFRICE016727-RA ID=SFRICE016727-RA|Name=SFRICE016727-RA|organism=Spodoptera frugiperda rice|type=CDS|length=1884bp|location=Sequence derived from alignment at SFRU_RICE_007179:34259..37686+ (Spodoptera frugiperda rice)
ATGTTGAAAATTTTGACTCTTTGTGCGGTCTTAGGGCTGGCTTTATGTCA
GCAGCCACCCCAAGTTGTGCTACCTGGCCAAGGTACGGTGATAGGAACAA
TATCTACTGAAGGAGATTACTTCGAGTTCCACGGTATACCATACGCGGAC
GCGACTTCGGGCATCAACCGATTTAAGGCACCGCTACCACCACCTTCATT
CCAAACCCCATTAACAGCTAACCGAAAAGACATAAAATGTGTTCGAGCCT
TAGGTGCAGGATATGAAGGCACCGAGGATTGTCTGGTAGCTAACATCTAC
ACACCAACTATAGTTAATACAAGGAAACTGCCCGTTATGGTATGGATTAA
AGGGAAAGAATTCGATCGCATTAACAATCCAGAATTATCTTTCCGCAATT
TTGTTGAAAAGGATGTTGTTGTAGTGTCATTGAATTACCGTGAATCGATT
TTAGGATTCCTCTGTCTTGGCACCGAAACTGCACCCGGTAATGCCGGATT
GAAAGATATTATTGCAGGTTTAAAGTGGGTCCAGAAAAATATCGCACGAT
TTGGGGGTGACCCCGACTCTATTACCCTCGTTGGCCATGGAAGTGGTGGA
GCTGCCGTGGACTTGGTCACAATGTCTCCAATGAGTAAAGGTTTGGTACA
AAAAGCCATTGCTCAAAGTGGCAACGCATATTCTCCTTGGGCTGTATCTC
GTGATAACTTGAAACATGCTATCGATGTAGCTGAAGCTCTTGGACATACA
ATAACCAGCATTGAACAGTTATCAGAGGTTTTTACCAGAACTAGTGTCGG
AGCTTTGATGGGTGTTATCAATGAACTTGACTTAACTGATAATTCTTTAG
CCTTTGCTCCTTGTGTGGAACGTAAAGAATTGGAAGGAGTAGAACCTTTT
CTTATAAAAACTCCTGCTGAAATTGTACGTGACAAAGAATTGTCAAATAT
TCCTACCATTATTGGATTTGTAGATTACGAAGGTACTATTCGATCAGAGG
AAGCATTTGGTAACGATTGGCTAAAGAGAATGGAAGAATCGTTCAGTGAA
TTTATACAGCCCGATTTAGAAATTGAAGACGATGCAGCAGTAGTAGATGA
AATTAAAAAATATTATTTTGGATCGAGTGGAACAAAAACAACAAATTCAT
ATGAACCTTACTTAAAATATCACGGTGACACAATGATTCTTATATCTTCT
TTAAGAGAAGTTAGAAATCGAGTATTTGCTACTACATCAAATACCTATTT
ATATCAGTTTTCATATAAAGGAACTCTCGGAGAAGCATTGGTTGGACCCA
TAAACGTTGATTCAGCGCCTCACGGTGCAGAAGTGGCTTATTTGTTCCAT
GGAGGTTCTGGAGGGACTGAGTTGGATCATCTGGTTAGTAAAATTCTCGT
TGACAGATGGACTAACTTCGCTAGGAATGGTAACCCCACAACTACTCATT
CAACAGTAAATTGGGAGCCTTATACACAAAACGAAGCAAAATTCTTGCGC
ATAGGCTCTACTGAAGAAATTGTTGGACGTGGAGGTCGAGAAACCCAACC
TATAATGGAAATAGCTTTGATTAATCCCCATCCCCAAACTGCTGCATTTT
GGGAAGGTATTTACTCATCACATTTCTTAGATGCACAGAGCAATTGGGAA
ATTATTGACAGGAATGAAGATACTCCTACAACTACCCTGAGCCCAGGTGG
TATTGACGAGTGTGATGGTGATGACTGTAGTGATGACAATGGTAGCGGCA
ACGGTGATGATGACTGCGAAGGTGATGACTGTGATGAGGAAAATTCAGCC
TCAACGGCTATTAGCTACACTTTCTTAATAATTAGTCTGTTTTCAATTCT
GAACCATTTCCACTCCTCTCAGATTTTGTCGTAG
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Synonyms
The feature 'SFRICE016727-RA' has the following synonyms
Synonym
SFRICE016727-PA
SFRICE016727
maker-SFRU_RICE_007179-augustus-gene-0.9-mRNA-1