SFRICE033104-RA (mRNA) Spodoptera frugiperda rice

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameSFRICE033104-RA
Unique NameSFRICE033104-RA
TypemRNA
OrganismSpodoptera frugiperda rice (Fall armyworm - rice variant)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
SFRU_RICE_015775contigSFRU_RICE_015775:598..2989 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Spodoptera frugiperda rice annotation OGS2.32015-12-04
Properties
Property NameValue
Full nameSFRICE033104
eAED0.10
QI45|1|1|1|1|1|5|163|217
AED0.10
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
SFRICE033104SFRICE033104Spodoptera frugiperda ricegeneSFRU_RICE_015775 598..2989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE033104-RASFRICE033104-PASpodoptera frugiperda ricepolypeptideSFRU_RICE_015775 761..2944 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE033104-RA-exonSFRICE033104-RA-exon-5Spodoptera frugiperda riceexonSFRU_RICE_015775 598..878 -
SFRICE033104-RA-exonSFRICE033104-RA-exon-4Spodoptera frugiperda riceexonSFRU_RICE_015775 1460..1653 -
SFRICE033104-RA-exonSFRICE033104-RA-exon-3Spodoptera frugiperda riceexonSFRU_RICE_015775 2103..2244 -
SFRICE033104-RA-exonSFRICE033104-RA-exon-2Spodoptera frugiperda riceexonSFRU_RICE_015775 2497..2555 -
SFRICE033104-RA-exonSFRICE033104-RA-exon-1Spodoptera frugiperda riceexonSFRU_RICE_015775 2804..2989 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE033104-RA-three_prime_UTRSFRICE033104-RA-three_prime_UTR-12Spodoptera frugiperda ricethree_prime_UTRSFRU_RICE_015775 598..760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE033104-RA-CDSSFRICE033104-RA-CDS-5Spodoptera frugiperda riceCDSSFRU_RICE_015775 761..878 -
SFRICE033104-RA-CDSSFRICE033104-RA-CDS-4Spodoptera frugiperda riceCDSSFRU_RICE_015775 1460..1653 -
SFRICE033104-RA-CDSSFRICE033104-RA-CDS-3Spodoptera frugiperda riceCDSSFRU_RICE_015775 2103..2244 -
SFRICE033104-RA-CDSSFRICE033104-RA-CDS-2Spodoptera frugiperda riceCDSSFRU_RICE_015775 2497..2555 -
SFRICE033104-RA-CDSSFRICE033104-RA-CDS-1Spodoptera frugiperda riceCDSSFRU_RICE_015775 2804..2944 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
SFRICE033104-RA-five_prime_UTRSFRICE033104-RA-five_prime_UTR-6Spodoptera frugiperda ricefive_prime_UTRSFRU_RICE_015775 2945..2989 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=862bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)|Notes=Excludes all bases but those of type(s): exon.  
TGTATATCTTAAAATGTGTTTCCATTATAAGATTGTGATTTCCAGATGGT
TGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTGCATGA
TGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAAACCTC
ATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGAAAAATCCTCTCCA
CACAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAGCCACG
CAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTTGGTAC
CCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTCTTCGA
CACAGCTATAATTTTCCCTAGATTACGAAATATCACATATAACATTGTGA
TGAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTGCAGAA
GCCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATAGCTGC
AGATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGACGTCTC
TCGAACACATTCTTCCTGTGGAACCTAAAAAATACCCAAAAACATCTGCG
TGGTTAGCAAACTTGAAAGCGACGCCATATTGCAAGAAATGGAACGAAGA
AGGTGCTAATGCTTTGGGCGCGTATGTTAAGAGTAAAGTTGCTTTGTAAG
GTCTAAGCGAATAAATGTATTTAACCAGAATTACTTTTTATTATACAATT
TCTCATGTATGAATAAAGATATATTTTCCATTTATTATCGTTTTGTTTTA
TCTTTGAACCCTAGGAAGACTACGTCGAAGTTATCATTTAAACAGGATCA
TTCTGAGAAAAG
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protein sequence of SFRICE033104-RA

>SFRICE033104-PA ID=SFRICE033104-PA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=218bp
MVVKLYTLDMSPPVRACMMACEIFNVPFEKIPVNLIAGEHLTPEYLKKNP
LHTVPVMEDGDVTLHDSHAIMAYLADTYGKDESWYPKDTKKRALVNQKLF
FDTAIIFPRLRNITYNIVMKGKTTIEPELMEAIAEAYGFMEAFLSRTKYI
AADHVTIADIGILAVMTSLEHILPVEPKKYPKTSAWLANLKATPYCKKWN
EEGANALGAYVKSKVAL.
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mRNA from alignment at SFRU_RICE_015775:598..2989-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=mRNA|length=2392bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)
TGTATATCTTAAAATGTGTTTCCATTATAAGATTGTGATTTCCAGATGGT
TGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTGCATGA
TGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAAACCTC
ATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGGTAAGATAATATAT
CTGCTATATGTTTTTACTCTAATGCTGCACTGTAGTTGATCCAACAGAAA
TTATGACTTAGCAGTTGTGCATAAGTACTAGTAATCCTATGTGTAAATTA
TACGTCATAAGAACATACACAGTTTTATGCTATGTCCATCTACATTCCTA
TGGGTTATAAACGGATAGAAATATCTTAAGAGTATAGATGTACATAAATG
CAACTTAAATAAAAAAGATTTTTGTTTTTTACAGAAAAATCCTCTCCACA
CAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAGGTTGGTG
TGATTTCTTCTCGAACATTATAGACTGTTAACTGTATCAAATCATCATCA
AACACACTCAAAACACTTCAAATACAGATCATTTAGCACACACACCGTGA
TGTCGATCACGGTTGTATAGTCTGAGTTAGAAGTGGCATTACTATGACCA
TGGTCTTAACTTAAGATCAATTCTATGCCAAAAAAATCTGAGACCCTCAT
AAAAAAGTAAACACATAACTTATGCACACTTTTTTTCATTTCCAGCCACG
CAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTTGGTAC
CCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTCTTCGA
CACAGCTATAATTTTCCCTAGATTACGAAATATCACAGTAAGTAGCATTC
TTGAAACTACAAGGCAGATTTGAATGGGACCGTTGGTAGAAGGCGCCTTA
GACGGACATAGAGCGACCAGATTAGCGATATATTATAGAAGGGCCAAATT
AAAAGTAACTTTAACTGACGAGCATACATGAAAAGACTGATGAATGTTGA
TGATGAAGTGAAAGAGATGTGTAAGAATCGTAGTAAATGGCGTTCCATTG
TCTCCGCCTCCCCCATGGGCATTCTCGCTTAATAACATGACACGTACACA
ACGTATGTCTAAATATAAATATTTTGTTTTCAAATGGAAAAGATTTTAAA
AAAACATTCAAACCAAAAACAAATATTTTTCATTACAAATAACATATAAA
TATATAGAGCATTAACAATATGGATATCGTCTGAAATATGGTATTAACAG
ATTTTTTGTATTAAAATATTATATTTTTTCTTACAGTATAACATTGTGAT
GAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTGCAGAAG
CCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATAGCTGCA
GATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGACGTCTCT
CGAACACATTCTTCCTGTGGAACCTAAAAAGTGAGTAAAATTATTCCTCT
TTAACCTCTTGTCTGCCGGTACAGGAGCCACAATAGAAAACACACTGTGT
TTCGAGTAGATCTGCGTTTATACCACGGGTTAAAAGGCCGGCAACGCACC
TATGACTGCTCTAGTGTTACGCCCCGTCTATGGGCAGCATGATCGCTTAC
CATTACGTGATCCGTCAGCTTGTTTACCTCCTATCCCATAAAAAAATACA
TTTAGAGTTTTTGCCCACAATTCTCTGGTTAACTTCGTTAGTCAAATTAA
CGTTTTAATAAGTCAATATGAACCTAATTGGATTTGATAAATGGATTAAA
AAAAGCAATATTATTTTTCGAATTTCGACATAAGCTTGCTTATTATGTTA
GTTTGCAATGCAAAAGGGCTTACACTCGTTCACTACATTCTTTCTGAAGG
AACTGAAGGGGGTCGACAGAAAACCAAAGGCGTCGACATAACTGATAAGC
TTAAATGTCAAACAGTGTACAGAAATGTCGGAGGAAAAAATAAAGTTTTA
ATAGTTTAAATTATGATGAATCAATTATGAATATTAAACCAATTTGTTGT
TTCTCTTTCAGATACCCAAAAACATCTGCGTGGTTAGCAAACTTGAAAGC
GACGCCATATTGCAAGAAATGGAACGAAGAAGGTGCTAATGCTTTGGGCG
CGTATGTTAAGAGTAAAGTTGCTTTGTAAGGTCTAAGCGAATAAATGTAT
TTAACCAGAATTACTTTTTATTATACAATTTCTCATGTATGAATAAAGAT
ATATTTTCCATTTATTATCGTTTTGTTTTATCTTTGAACCCTAGGAAGAC
TACGTCGAAGTTATCATTTAAACAGGATCATTCTGAGAAAAG
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Coding sequence (CDS) from alignment at SFRU_RICE_015775:598..2989-

>SFRICE033104-RA ID=SFRICE033104-RA|Name=SFRICE033104-RA|organism=Spodoptera frugiperda rice|type=CDS|length=654bp|location=Sequence derived from alignment at SFRU_RICE_015775:598..2989- (Spodoptera frugiperda rice)
ATGGTTGTAAAACTGTACACTTTGGACATGAGCCCGCCAGTGCGCGCGTG
CATGATGGCTTGTGAGATCTTCAACGTGCCATTCGAGAAGATACCAGTAA
ACCTCATTGCTGGTGAACATCTCACTCCAGAATATTTAAAGAAAAATCCT
CTCCACACAGTCCCTGTTATGGAAGATGGTGATGTCACATTACATGACAG
CCACGCAATCATGGCCTACCTCGCTGACACCTACGGAAAGGATGAATCTT
GGTACCCAAAGGACACCAAAAAACGGGCGCTTGTTAACCAAAAACTGTTC
TTCGACACAGCTATAATTTTCCCTAGATTACGAAATATCACATATAACAT
TGTGATGAAAGGAAAGACGACCATCGAACCAGAATTGATGGAGGCCATTG
CAGAAGCCTACGGGTTCATGGAAGCTTTCCTATCCCGGACTAAATATATA
GCTGCAGATCATGTTACCATCGCCGATATAGGAATATTGGCTGTTATGAC
GTCTCTCGAACACATTCTTCCTGTGGAACCTAAAAAATACCCAAAAACAT
CTGCGTGGTTAGCAAACTTGAAAGCGACGCCATATTGCAAGAAATGGAAC
GAAGAAGGTGCTAATGCTTTGGGCGCGTATGTTAAGAGTAAAGTTGCTTT
GTAA
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Synonyms
The feature 'SFRICE033104-RA' has the following synonyms
Synonym
SFRICE033104-PA
SFRICE033104
maker-SFRU_RICE_015775-augustus-gene-0.3-mRNA-1