SFRICE039628-PA (polypeptide) Spodoptera frugiperda rice

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	SFRICE039628-RA
Unique Name	SFRICE039628-PA
Type	polypeptide
Organism	Spodoptera frugiperda rice (Fall armyworm - rice variant)
Sequence length	165

Homology

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1274106707|ref|XP_022817969.1| (ATP-binding cassette sub-family A member 3-like [Spodoptera litura])

HSP 1 Score: 120.9 bits (302), Expect = 4.800e-24
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRREL 81
            LKRGTY EARASSR LA QLGLQ KLGA C+QLSGGMQRRAQLACALAGGA VLILDEPTSGLDVETRREL
Sbjct:  118 LKRGTYSEARASSRALAGQLGLQHKLGAMCQQLSGGMQRRAQLACALAGGADVLILDEPTSGLDVETRREL 188

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BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1247044559|gb|PCG79038.1| (hypothetical protein B5V51_2217 [Heliothis virescens])

HSP 1 Score: 118.2 bits (295), Expect = 3.100e-23
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LKRG+Y +AR SS  LA++LGL+ KL AQ R+LSGGM+RRAQLACALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  591 LKRGSYLQARESSVALASRLGLREKLSAQARELSGGMKRRAQLACALAGGADVLVLDEPTSGLDVETRRELWDLLLALRGERTVLLTTHFMEEADALGD 689

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BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1199402598|ref|XP_021196764.1| (ATP-binding cassette sub-family A member 5-like isoform X1 [Helicoverpa armigera])

HSP 1 Score: 115.2 bits (287), Expect = 2.600e-22
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LKRG+Y +A  SS  LAT+LGL+ KL AQ  +LSGGM+RRAQLACALAGGA+VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  660 LKRGSYKQAVESSVTLATRLGLRDKLHAQAHELSGGMKRRAQLACALAGGASVLVLDEPTSGLDVETRRELWDLLLALRGERTVLLTTHFMEEADALGD 758

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BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1199402600|ref|XP_021196765.1| (ATP-binding cassette sub-family A member 1-like isoform X2 [Helicoverpa armigera] >gi|1402413324|gb|PZC73059.1| hypothetical protein B5X24_HaOG200332 [Helicoverpa armigera])

HSP 1 Score: 115.2 bits (287), Expect = 2.600e-22
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LKRG+Y +A  SS  LAT+LGL+ KL AQ  +LSGGM+RRAQLACALAGGA+VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  591 LKRGSYKQAVESSVTLATRLGLRDKLHAQAHELSGGMKRRAQLACALAGGASVLVLDEPTSGLDVETRRELWDLLLALRGERTVLLTTHFMEEADALGD 689

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1496270206|ref|XP_026743629.1| (ATP-binding cassette sub-family A member 5-like isoform X2 [Trichoplusia ni])

HSP 1 Score: 114.4 bits (285), Expect = 4.500e-22
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LKRGTY  A  SSR LA +L L +KLGA  R+LSGGM+RRAQLACALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  590 LKRGTYWSAVESSRLLAERLSLDSKLGALPRELSGGMKRRAQLACALAGGADVLVLDEPTSGLDVETRRELWDLLLSLRGERTVLLTTHFMEEADALGD 688

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1496270204|ref|XP_026743628.1| (retinal-specific ATP-binding cassette transporter-like isoform X1 [Trichoplusia ni])

HSP 1 Score: 114.4 bits (285), Expect = 4.500e-22
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LKRGTY  A  SSR LA +L L +KLGA  R+LSGGM+RRAQLACALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  590 LKRGTYWSAVESSRLLAERLSLDSKLGALPRELSGGMKRRAQLACALAGGADVLVLDEPTSGLDVETRRELWDLLLSLRGERTVLLTTHFMEEADALGD 688

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|930669544|gb|KPJ10426.1| (ATP-binding cassette sub-family A member 3 [Papilio machaon])

HSP 1 Score: 104.4 bits (259), Expect = 4.600e-19
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LK  +Y EA+  S+QL  +LGL  K G++  QLSGGM+RR QL CALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  710 LKGFSYHEAKVESKQLLEKLGLYEKAGSRSAQLSGGMRRRLQLGCALAGGARVLVLDEPTSGLDVETRRELWDLLLSLRGSRTVLLTTHFMEEADALGD 808

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|943964722|ref|XP_014364557.1| (PREDICTED: ATP-binding cassette sub-family A member 3-like [Papilio machaon])

HSP 1 Score: 104.4 bits (259), Expect = 4.600e-19
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LK  +Y EA+  S+QL  +LGL  K G++  QLSGGM+RR QL CALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  605 LKGFSYHEAKVESKQLLEKLGLYEKAGSRSAQLSGGMRRRLQLGCALAGGARVLVLDEPTSGLDVETRRELWDLLLSLRGSRTVLLTTHFMEEADALGD 703

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|1549094259|gb|RVE49180.1| (hypothetical protein evm_006187 [Chilo suppressalis])

HSP 1 Score: 104.0 bits (258), Expect = 6.000e-19
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LK G++ E R SS  L  +LG+  K+ +   +LSGGM+RR QLACALAGGA VLILDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  691 LKGGSFAETRTSSESLLDKLGILDKMNSMSSELSGGMKRRLQLACALAGGADVLILDEPTSGLDVETRRELWDLLLALRGSRTVLLSTHFMEEADALGD 789

[Close]

BLAST of SFRICE039628-RA vs. GenBank_protein
Match: gi|910320279|ref|XP_013163020.1| (PREDICTED: ATP-binding cassette sub-family A member 2-like [Papilio xuthus])

HSP 1 Score: 104.0 bits (258), Expect = 6.000e-19
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 0

Query:   10 LKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRAQLACALAGGATVLILDEPTSGLDVETRRELWDLLLV-----NSFIYFFFMKQADNRAD 104
            LK  +Y EA+A  +QL  +LGL  K G++  QLSGGM+RR QL CALAGGA VL+LDEPTSGLDVETRRELWDLLL         +   FM++AD   D
Sbjct:  604 LKGYSYQEAKAECKQLLEKLGLYEKAGSRSAQLSGGMRRRLQLGCALAGGARVLVLDEPTSGLDVETRRELWDLLLSLRGSRTVLLTTHFMEEADALGD 702

The following BLAST results are available for this feature:

BLAST of SFRICE039628-RA vs. GenBank_protein

BLAST of SFRICE039628-RA vs. GenBank_protein
Analysis Date: 2019-07-12 (Diamond: rice OGS2.3 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
gi\|1274106707\|ref\|XP_022817969.1\|	4.800e-24	90.14	ATP-binding cassette sub-family A member 3-like [S...	[more]
gi\|1247044559\|gb\|PCG79038.1\|	3.100e-23	65.66	hypothetical protein B5V51_2217 [Heliothis viresce...	[more]
gi\|1199402598\|ref\|XP_021196764.1\|	2.600e-22	64.65	ATP-binding cassette sub-family A member 5-like is...	[more]
gi\|1199402600\|ref\|XP_021196765.1\|	2.600e-22	64.65	ATP-binding cassette sub-family A member 1-like is...	[more]
gi\|1496270206\|ref\|XP_026743629.1\|	4.500e-22	65.66	ATP-binding cassette sub-family A member 5-like is...	[more]
gi\|1496270204\|ref\|XP_026743628.1\|	4.500e-22	65.66	retinal-specific ATP-binding cassette transporter-...	[more]
gi\|930669544\|gb\|KPJ10426.1\|	4.600e-19	58.59	ATP-binding cassette sub-family A member 3 [Papili...	[more]
gi\|943964722\|ref\|XP_014364557.1\|	4.600e-19	58.59	PREDICTED: ATP-binding cassette sub-family A membe...	[more]
gi\|1549094259\|gb\|RVE49180.1\|	6.000e-19	57.58	hypothetical protein evm_006187 [Chilo suppressali...	[more]
gi\|910320279\|ref\|XP_013163020.1\|	6.000e-19	58.59	PREDICTED: ATP-binding cassette sub-family A membe...	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterProScan on rice OGS2.3
Date Performed: 2019-07-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.300		coord: 7..110 e-value: 1.8E-21 score: 78.7
None	No IPR available	PANTHER	PTHR19229:SF36	ATP-BINDING CASSETTE SUB-FAMILY A MEMBER 2	coord: 8..85
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 23..70 e-value: 2.4E-8 score: 34.6
IPR026082	ABC transporter A	PANTHER	PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	coord: 8..85
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
SFRU_RICE_017512	contig	SFRU_RICE_017512:241..977 - View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond: rice OGS2.3 vs NR	2019-07-12
InterProScan on rice OGS2.3	2019-07-12
Spodoptera frugiperda rice annotation OGS2.3	2015-12-04

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
SFRICE039628-RA	SFRICE039628-RA	Spodoptera frugiperda rice	mRNA	SFRU_RICE_017512 241..977 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>SFRICE039628-PA ID=SFRICE039628-PA|Name=SFRICE039628-RA|organism=Spodoptera frugiperda rice|type=polypeptide|length=165bp
MNVFVCTAQLKRGTYGEARASSRQLATQLGLQAKLGAQCRQLSGGMQRRA
QLACALAGGATVLILDEPTSGLDVETRRELWDLLLVNSFIYFFFMKQADN
RADVLPDGKQSPPPMDTSNTRGFTKNRANLQHCIATNDVEPQCDAMPQRK
NFIRYNLSTISTER.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0042626	ATPase activity, coupled to transmembrane movement of substances
GO:0005524	ATP binding
GO:0016887	ATPase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR026082	ABCA
IPR003439	ABC_transporter-like

Orthology

View orthology data for SFRICE039628-PA